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1

From Oxidative Stress Damage to Pathways, Networks, and Autophagy via MicroRNAs

Engedal, Nikolai, Žerovnik, Eva, Rudov, Alexander, Galli, Francesco, Olivieri, Fabiola, Procopio, Antonio Domenico, Rippo, Maria Rita, Monsurrò, Vladia, Betti, Michele, Albertini, Maria Cristina

Journal:

Oxidative Medicine & Cellular Longevity

Year:

2018

Language:

english

File:

PDF, 3.75 MB

english, 2018

2

On the mechanism of human stefin B folding: I. Comparison to homologous stefin A. Influence of pH and trifluoroethanol on the fast and slow folding phases

Eva Žerovnik, Richard Virden, Roman Jerala, Vito Turk, Jonathan P. Waltho

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 134 KB

english, 1998

3

On the mechanism of human stefin B folding: II. Folding from GuHCl unfolded, TFE denatured, acid denatured, and acid intermediate states

Eva Žerovnik, Roman Jerala, Richard Virden, Louise Kroon Žitko, Vito Turk, Jonathan P. Waltho

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1998

Language:

english

File:

PDF, 153 KB

english, 1998

4

Differences in the effects of TFE on the folding pathways of human stefins A and B

Eva Žerovnik, Richard Virden, Roman Jerala, Louise Kroon-Žitko, Vito Turk, Jonathan P. Waltho

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 275 KB

english, 1999

5

Major differences in stability and dimerization properties of two chimeric mutants of human stefins

Manca Kenig, Roman Jerala, Louise Kroon-Žitko, Vito Turk, Eva Žerovnik

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 374 KB

english, 2001

6

The emerging role of cystatins in Alzheimer's disease

Journal:

Year:

2009

Language:

english

File:

PDF, 56 KB

english, 2009

7

Binding of amyloid peptides to domain-swapped dimers of other amyloid-forming proteins may prevent their neurotoxicity

Ajda Taler-Verčič, Eva Žerovnik

Journal:

Year:

2010

Language:

english

File:

PDF, 321 KB

english, 2010

8

Interactions of myoglobin with urea and some Alkylureas: I. Solvation in urea and Alkylurea solutions

Eva Žerovnik, Savo Lapanje

Journal:

Biophysical Chemistry

Year:

1986

Language:

english

File:

PDF, 524 KB

english, 1986

9

Gibbs free energy of transfer of glycine and diglycine from water to alkylurea solutions: Measured vs. calculated values

Eva Žerovnik, Savo Lapanje

Journal:

Biophysical Chemistry

Year:

1988

Language:

english

File:

PDF, 802 KB

english, 1988

10

Amyloid-fibril formation : Proposed mechanisms and relevance to conformational disease

Journal:

Year:

2002

Language:

english

File:

PDF, 275 KB

english, 2002

11

Different propensity to form amyloid fibrils by two homologous proteins—Human stefins A and B: Searching for an explanation

Saša Jenko, Miha Škarabot, Manca Kenig, Gregor Gunčar, Igor Muševič, Dušan Turk, Eva Žerovnik

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 333 KB

english, 2004

12

Folding and amyloid-fibril formation for a series of human stefins' chimeras: Any correlation?

Manca Kenig, Saša Jenko-Kokalj, Magda Tušek-Žnidarič, Maruša Pompe-Novak, Gregor Gunčar, Dušan Turk, Jonathan P. Waltho, Rosemarie A. Staniforth, Franc Avbelj, Eva Žerovnik

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 868 KB

english, 2006

13

The mechanism of amyloid-fibril formation by stefin B: Temperature and protein concentration dependence of the rates

Katja Škerget, Andrej Vilfan, Maruša Pompe-Novak, Vito Turk, Jonathan P. Waltho, Dušan Turk, Eva Žerovnik

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 378 KB

english, 2009

14

Interaction of human stefin B in the prefibrillar oligomeric form with membranes : Correlation with cellular toxicity

Gregor Anderluh, Ion Gutirrez-Aguirre, Sabina Rabzelj, Slavko Čeru, Nataša Kopitar-Jerala, Peter Maček, Vito Turk, Eva Žerovnik

Journal:

Year:

2005

Language:

english

File:

PDF, 328 KB

english, 2005

15

High affinity copper binding by stefin B (cystatin B) and its role in the inhibition of amyloid fibrillation

Eva Žerovnik, Katja Škerget, Magda Tušek-Žnidarič, Corina Loeschner, Marcus W. Brazier, David R. Brown

Journal:

Year:

2006

Language:

english

File:

PDF, 994 KB

english, 2006

16

Interaction with model membranes and pore formation by human stefin B – studying the native and prefibrillar states

Sabina Rabzelj, Gabriella Viero, Ion Gutiérrez-Aguirre, Vito Turk, Mauro Dalla Serra, Gregor Anderluh, Eva Žerovnik

Journal:

Year:

2008

Language:

english

File:

PDF, 396 KB

english, 2008

17

Mechanisms of amyloid fibril formation – focus on domain-swapping

Eva Žerovnik, Veronika Stoka, Andreja Mirtič, Gregor Gunčar, Jože Grdadolnik, Rosemary A. Staniforth, Dušan Turk, Vito Turk

Journal:

Year:

2011

Language:

english

File:

PDF, 481 KB

english, 2011

18

In vitro study of stability and amyloid-fibril formation of two mutants of human stefin B (cystatin B) occurring in patients with EPM1

Sabina Rabzelj, Vito Turk, Eva Žerovnik

Journal:

Protein Science

Year:

2005

Language:

english

File:

PDF, 869 KB

english, 2005

19

Folding studies of the cysteine proteinase inhibitor — human stefin A

Eva Žerovnik, Brigita Lenarčič, Roman Jerala, Vito Turk

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1991

Language:

english

File:

PDF, 600 KB

english, 1991

20

Compactness of the molten globule in comparison to unfolded states as observed by size-exclusion chromatography

Eva Žerovnik, Roman Jerala, Nataša Poklar, Luise Kroon-Žitko, V. Turk

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1994

Language:

english

File:

PDF, 336 KB

english, 1994

21

Similar toxicity of the oligomeric molten globule state and the prefibrillar oligomers

Slavko Čeru, Eva Žerovnik

Journal:

Year:

2008

Language:

english

File:

PDF, 721 KB

english, 2008

22

Essential role of Pro 74 in stefin B amyloid-fibril formation: Dual action of cyclophilin A on the process

Aida Smajlović, Selma Berbić, Cordelia Schiene-Fischer, Magda Tušek-Žnidarič, Ajda Taler, Saša Jenko-Kokalj, Dušan Turk, Eva Žerovnik

Journal:

Year:

2009

Language:

english

File:

PDF, 490 KB

english, 2009

23

Human stefin B readily forms amyloid fibrils in vitro

Eva Žerovnik, Maruša Pompe-Novak, Miha Škarabot, Maja Ravnikar, Igor Muševič, Vito Turk

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

2002

Language:

english

File:

PDF, 418 KB

english, 2002

24

Refolding of recombinant sulphonated procathepsin S and of reduced chicken cystatin; implications for renaturation experiments

Eva Žerovnik, Gregor Kopitar, Janko Kos, Vito Turk

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1998

Language:

english

File:

PDF, 219 KB

english, 1998

25

Intracellular aggregation of human stefin B: confocal and electron microscopy study

Slavko Čeru, Robert Layfield, Tina Zavašnik-Bergant, Urška Repnik, Nataša Kopitar-Jerala, Vito Turk, Eva Žerovnik

Journal:

Biology of the Cell

Year:

2010

Language:

english

File:

PDF, 1.96 MB

english, 2010

26

Interactions of alkylureas with l-valine, l-valyl-l-valine, l-leucine, and l-leucyl-l-leucine : Thermodynamic studies

SAVO LAPANJE, ZDENKA KRANJC, MARJAN M. SENEGAČNIK, EVA ŽEROVNIK

Journal:

Chemical Biology & Drug Design

Year:

1989

Language:

english

File:

PDF, 400 KB

english, 1989

27

Calorimetric measurements of thermal denaturation of stefins A and B : Comparison to predicted thermodynamics of stefin-B unfolding

Eva ŽEROVNIK, Karl LOHNER, Roman JERALA, Peter LAGGNER, Vito TURK

Journal:

Year:

1992

Language:

english

File:

PDF, 510 KB

english, 1992

28

Structural Characterisation of Human Stefin A in Solution and Implications for Binding to Cysteine Proteinases

John R. Martin, Roman Jerala, Louise Kroon-Žitko, Eva Žerovnik, Vito Turk, Jonathan P. Waltho

Journal:

Year:

1994

Language:

english

File:

PDF, 1.39 MB

english, 1994

29

Characterization of the Equilibrium Intermediates in Acid Denaturation of Human Stefin B

Eva Žerovnik, Roman Jerala, Luise Kroon-Žitko, Vito Turk, Karl Lohner

Journal:

Year:

1997

Language:

english

File:

PDF, 947 KB

english, 1997

30

The Three-dimensional Solution Structure of Human Stefin A

John R. Martin, Jeremy C. Craven, Roman Jerala, Louise Kroon-Žitko, Eva Žerovnik, Vito Turk, Jonathan P. Waltho

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 1.03 MB

english, 1995

31

Accessing the global minimum conformation of stefin A dimer by annealing under partially denaturing conditions

Roman Jerala, Eva Žerovnik

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 311 KB

english, 1999

32

High-Yield Expression and Purification of Recombinant Human Macrophage Migration Inhibitory Factor

Bojana Mozetič-Francky, Vladimir Cotič, Anka Ritonja, Eva Žerovnik, Andrej Francky

Journal:

Protein Expression and Purification

Year:

1997

Language:

english

File:

PDF, 311 KB

english, 1997

33

The cross-road between the mechanisms of protein folding and aggregation; study of human stefin B and its H75W mutant

Aida Smajlović, Selma Berbić, Eva Žerovnik

Journal:

Biochemical and Biophysical Research Communications

Year:

2011

Language:

english

File:

PDF, 475 KB

english, 2011

34

Amyloid fibril formation by human stefins: Structure, mechanism & putative functions

Eva Žerovnik, Rosemary A. Staniforth, Dušan Turk

Journal:

Year:

2010

Language:

english

File:

PDF, 1.38 MB

english, 2010

35

Essential Role of Proline Isomerization in Stefin B Tetramer Formation

Saša Jenko Kokalj, Gregor Gunčar, Igor Štern, Gareth Morgan, Sabina Rabzelj, Manca Kenig, Rosemary A. Staniforth, Jonathan P. Waltho, Eva Žerovnik, Dušan Turk

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.72 MB

english, 2007

36

Exclusion of the Native α-Helix from the Amyloid Fibrils of a Mixed α/β Protein

Gareth J. Morgan, Silva Giannini, Andrea M. Hounslow, C. Jeremy Craven, Eva Zerovnik, Vito Turk, Jonathan P. Waltho, Rosemary A. Staniforth

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 1.26 MB

english, 2008

37

Protein aggregation as a possible cause for pathology in a subset of familial Unverricht–Lundborg disease

Slavko Čeru, Sabina Rabzelj, Nataša Kopitar-Jerala, Vito Turk, Eva Žerovnik

Journal:

Medical Hypotheses

Year:

2005

Language:

english

File:

PDF, 93 KB

english, 2005

38

Impaired autophagy: a link between neurodegenerative diseases and progressive myoclonus epilepsies

Mira Polajnar, Eva Žerovnik

Journal:

Trends in Molecular Medicine

Year:

2011

Language:

english

File:

PDF, 617 KB

english, 2011

39

A single prion protein peptide can elicit a panel of isoform specific monoclonal antibodies

Tanja Vranac, Katrina Pretnar Hartman, Mara Popović, Anja Venturini, Eva Žerovnik, Vladka Čurin Šerbec

Journal:

Year:

2006

Language:

english

File:

PDF, 3.39 MB

english, 2006

40

Modulation of Contact Order Effects in the Two-State Folding of Stefins A and B

Jelinska, Clare, Davis, Peter J., Kenig, Manca, Žerovnik, Eva, Kokalj, Saša Jenko, Gunčar, Gregor, Turk, Dušan, Turk, Vito, Clarke, David T., Waltho, Jonathan P., Staniforth, Rosemary A.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 396 KB

english, 2011

41

Equilibrium and transient intermediates in folding of human macrophage migration inhibitory factor

Eva Žerovnik, Vojko Janjić, Andrej Francky, Bojana Mozetič-Francky

Journal:

Year:

1999

Language:

english

File:

PDF, 914 KB

english, 1999

42

Human Cathepsin B Is a Metastable Enzyme Stabilized by Specific Ionic Interactions Associated with the Active Site

Turk, Boris, Dolenc, Iztok, Zerovnik, Eva, Turk, Dusan, Gubensek, Franc, Turk, Vito

Journal:

Year:

1994

Language:

english

File:

PDF, 813 KB

english, 1994

43

Amyloid fibrils compared to peptide nanotubes

Žganec, Matjaž, Žerovnik, Eva

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

2014

Language:

english

File:

PDF, 1.96 MB

english, 2014

44

Size and morphology of toxic oligomers of amyloidogenic proteins: a case study of human stefin B

Čeru, Slavko, Jenko-Kokalj, S, Rabzelj, Sabina, Škarabot, Miha, Gutierrez-Aguirre, Ion, Kopitar-Jerala, Nataša, Anderluh, Gregor, Turk, Dušan, Turk, Vito, Žerovnik, Eva

Journal:

Year:

2008

Language:

english

File:

PDF, 1.77 MB

english, 2008

45

Effect of temperature on the apparent molal volume of ethylurea in aqueous solutions

Lapanje, Savo, Vlachy, Vojko, Kranjc, Zdenka, Zerovnik, Eva

Journal:

Journal of Chemical & Engineering Data

Year:

1985

Language:

english

File:

PDF, 479 KB

english, 1985

46

Amyloid fibril formation by human stefin B: influence of pH and TFE on fibril growth and morphology

Žerovnik, Eva, Škarabot, Miha, Škerget, Katja, Giannini, Silva, Žerovnik, Eva, Škarabot, Miha, Škerget, Katja, Giannini, Silva, Stoka, Veronika, Jenko-Kokalj, Saša, Staniforth, Rosemary A.

Journal:

Year:

2007

Language:

english

File:

PDF, 1.81 MB

english, 2007

47

Impaired autophagy: a link between neurodegenerative and neuropsychiatric diseases

Polajnar, Mira, Žerovnik, Eva

Journal:

Journal of Cellular and Molecular Medicine

Year:

2014

Language:

english

File:

PDF, 203 KB

english, 2014

48

Bio-nanoimaging || On Possible Function and Toxicity of Multiple Oligomeric/Conformational States of a Globular Protein – Human Stefin B

Year:

2014

Language:

english

File:

PDF, 1.95 MB

english, 2014

49

Biochemical characterization and structural modeling of human cathepsin E variant 2 in comparison to the wild-type protein

Puizdar, Vida, Zajc, Tajana, Žerovnik, Eva, Renko, Miha, Pieper, Ursula, Eswar, Narayanan, Šali, Andrej, Dolenc, Iztok, Turk, Vito

Journal:

Biological Chemistry

Year:

2012

Language:

english

File:

PDF, 1.17 MB

english, 2012

50

Influence of partial unfolding and aggregation of human stefin B (cystatin B) EPM1 mutants G50E and Q71P on selective cleavages by cathepsins B and S

Polajnar, Mira, Vidmar, Robert, Vizovišek, Matej, Fonović, Marko, Kopitar-Jerala, Nataša, Žerovnik, Eva

Journal:

Biological Chemistry

Year:

2013

Language:

english

File:

PDF, 715 KB

english, 2013

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