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51

Handling Marker-Marker Linkage Disequilibrium: Pedigree Analysis with Clustered Markers

Gonçalo R. Abecasis, Janis E. Wigginton

Journal:

The American Journal of Human Genetics

Year:

2005

Language:

english

File:

PDF, 604 KB

english, 2005

52

Efficient Study Designs for Test of Genetic Association Using Sibship Data and Unrelated Cases and Controls

Mingyao Li, Michael Boehnke, Gonçalo R. Abecasis

Journal:

The American Journal of Human Genetics

Year:

2006

Language:

english

File:

PDF, 877 KB

english, 2006

53

A Comparison of Phasing Algorithms for Trios and Unrelated Individuals

Jonathan Marchini, David Cutler, Nick Patterson, Matthew Stephens, Eleazar Eskin, Eran Halperin, Shin Lin, Zhaohui S. Qin, Heather M. Munro, Gonçalo R. Abecasis, Peter Donnelly

Journal:

The American Journal of Human Genetics

Year:

2006

Language:

english

File:

PDF, 329 KB

english, 2006

54

Sequence and Haplotype Analysis Supports HLA-C as the Psoriasis Susceptibility 1 Gene

Rajan P. Nair, Philip E. Stuart, Ioana Nistor, Ravi Hiremagalore, Nicholas V.C. Chia, Stefan Jenisch, Michael Weichenthal, Gonçalo R. Abecasis, Henry W. Lim, Enno Christophers, John J. Voorhees, James

Journal:

The American Journal of Human Genetics

Year:

2006

Language:

english

File:

PDF, 1.77 MB

english, 2006

55

Family-Based Association Tests for Genomewide Association Scans

Wei-Min Chen, Gonçalo R. Abecasis

Journal:

The American Journal of Human Genetics

Year:

2007

Language:

english

File:

PDF, 564 KB

english, 2007

56

Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants

Fu, Wenqing, O’Connor, Timothy D., Jun, Goo, Kang, Hyun Min, Abecasis, Goncalo, Leal, Suzanne M., Gabriel, Stacey, Altshuler, David, Shendure, Jay, Nickerson, Deborah A., Bamshad, Michael J., NHLBI Ex

Journal:

Year:

2012

Language:

english

File:

PDF, 778 KB

english, 2012

57

Genetic association study of age-related macular degeneration in the Spanish population

María Brión, Manuel Sanchez-Salorio, Marta Cortón, Maria de la Fuente, Belen Pazos, Mohammad Othman, Anand Swaroop, Goncalo Abecasis, Beatriz Sobrino, Angel Carracedo, for the Spanish multi-centre gro

Journal:

Acta Ophthalmologica (Blackwell)

Year:

2011

Language:

english

File:

PDF, 417 KB

english, 2011

58

Genotype Imputation

Li, Yun, Willer, Cristen, Sanna, Serena, Abecasis, Gonçalo

Journal:

Annual Review of Genomics and Human Genetics

Year:

2009

Language:

english

File:

PDF, 566 KB

english, 2009

59

Detecting and Estimating Contamination of Human DNA Samples in Sequencing and Array-Based Genotype Data

Goo Jun, Matthew Flickinger, Kurt N. Hetrick, Jane M. Romm, Kimberly F. Doheny, Gonçalo R. Abecasis, Michael Boehnke, Hyun Min Kang

Journal:

The American Journal of Human Genetics

Year:

2012

Language:

english

File:

PDF, 597 KB

english, 2012

60

Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes

Zeggini, Eleftheria, Scott, Laura J, Saxena, Richa, Voight, Benjamin F, Marchini, Jonathan L, Hu, Tianle, de Bakker, Paul IW, Abecasis, Gonçalo R, Almgren, Peter, Andersen, Gitte, Ardlie, Kristin, Bos

Journal:

Nature Genetics

Year:

2008

Language:

english

File:

PDF, 325 KB

english, 2008

61

Age-Related Macular Degeneration: A High-Resolution Genome Scan for Susceptibility Loci in a Population Enriched for Late-Stage Disease

Gonçalo R. Abecasis, Beverly M. Yashar, Yu Zhao, Noor M. Ghiasvand, Sepideh Zareparsi, Kari E.H. Branham, Adam C. Reddick, Edward H. Trager, Shigeo Yoshida, John Bahling, Elena Filippova, Susan Elner,

Journal:

The American Journal of Human Genetics

Year:

2004

Language:

english

File:

PDF, 1.02 MB

english, 2004

62

An integrated map of genetic variation from 1,092 human genomes

McVean, Gil A., Altshuler (Co-Chair), David M., Durbin (Co-Chair), Richard M., Abecasis, Gonçalo R., Bentley, David R., Chakravarti, Aravinda, Clark, Andrew G., Donnelly, Peter, Eichler, Evan E., Flic

Journal:

Year:

2012

Language:

english

File:

PDF, 1.02 MB

english, 2012

63

Fast and accurate genotype imputation in genome-wide association studies through pre-phasing

Howie, Bryan, Fuchsberger, Christian, Stephens, Matthew, Marchini, Jonathan, Abecasis, Gonçalo R

Journal:

Nature Genetics

Year:

2012

Language:

english

File:

PDF, 315 KB

english, 2012

64

Unraveling a Multifactorial Late-Onset Disease: From Genetic Susceptibility to Disease Mechanisms for Age-Related Macular Degeneration

Swaroop, Anand, Chew, Emily Y., Bowes Rickman, Catherine, Abecasis, Gonçalo R.

Journal:

Annual Review of Genomics and Human Genetics

Year:

2009

Language:

english

File:

PDF, 1001 KB

english, 2009

65

Molecular Dissection of Psoriasis: Integrating Genetics and Biology

Elder, James T, Bruce, Allen T, Gudjonsson, Johann E, Johnston, Andrew, Stuart, Philip E, Tejasvi, Trilokraj, Voorhees, John J, Abecasis, Gonçalo R, Nair, Rajan P

Journal:

The Journal of Investigative Dermatology

Year:

2010

Language:

english

File:

PDF, 1.95 MB

english, 2010

66

Accurate Local-Ancestry Inference in Exome-Sequenced Admixed Individuals via Off-Target Sequence Reads

Hu, Youna, Willer, Cristen, Zhan, Xiaowei, Kang, Hyun Min, Abecasis, Gonçalo R.

Journal:

The American Journal of Human Genetics

Year:

2013

Language:

english

File:

PDF, 654 KB

english, 2013

67

Rare Nonsynonymous Exonic Variants in Addiction and Behavioral Disinhibition

Vrieze, Scott I., Feng, Shuang, Miller, Michael B., Hicks, Brian M., Pankratz, Nathan, Abecasis, Gonçalo R., Iacono, William G., McGue, Matt

Journal:

Biological Psychiatry

Year:

2014

Language:

english

File:

PDF, 159 KB

english, 2014

68

Fine Mapping on Chromosome 13q32–34 and Brain Expression Analysis Implicates MYO16 in Schizophrenia

Rodriguez-Murillo, Laura, Xu, Bin, Roos, J Louw, Abecasis, Gonçalo R, Gogos, Joseph A, Karayiorgou, Maria

Journal:

Neuropsychopharmacology

Year:

2014

Language:

english

File:

PDF, 556 KB

english, 2014

69

Rare-Variant Association Analysis: Study Designs and Statistical Tests

Lee, Seunggeung, Abecasis, Gonçalo R., Boehnke, Michael, Lin, Xihong

Journal:

The American Journal of Human Genetics

Year:

2014

Language:

english

File:

PDF, 564 KB

english, 2014

70

Congenitally corrected transposition of the great vessels and defibrillator lead endocarditis

Cardoso, Gonçalo, Abecasis, João, Ribeiras, Regina, Cavaco, Diogo, Andrade, Maria João, Mendes, Miguel

Journal:

Revista Portuguesa de Cardiologia (English Edition)

Year:

2014

Language:

english

File:

PDF, 1.58 MB

english, 2014

71

Aortic Coarctation Repair in the Adult

Cardoso, Goncalo, Abecasis, Miguel, Anjos, Rui, Marques, Marta, Koukoulis, Giovanna, Aguiar, Carlos, Neves, José Pedro

Journal:

Journal of Cardiac Surgery

Year:

2014

Language:

english

File:

PDF, 628 KB

english, 2014

72

No Clinically Significant Association between CFH and ARMS2 Genotypes and Response to Nutritional Supplements

Chew, Emily Y., Klein, Michael L., Clemons, Traci E., Agrón, Elvira, Ratnapriya, Rinki, Edwards, Albert O., Fritsche, Lars G., Swaroop, Anand, Abecasis, Gonçalo R.

Journal:

Year:

2014

Language:

english

File:

PDF, 854 KB

english, 2014

73

Genetic associations of nonsynonymous exonic variants with psychophysiological endophenotypes

Vrieze, Scott I., Malone, Stephen M., Pankratz, Nathan, Vaidyanathan, Uma, Miller, Michael B., Kang, Hyun Min, McGue, Matt, Abecasis, Gonçalo, Iacono, William G.

Journal:

Psychophysiology

Year:

2014

Language:

english

File:

PDF, 306 KB

english, 2014

74

Genetic Testing in Persons with Age-Related Macular Degeneration and the Use of the AREDS Supplements: To Test or Not to Test?

Chew, Emily Y., Klein, Michael L., Clemons, Traci E., Agrón, Elvira, Abecasis, Gonçalo R.

Journal:

Year:

2015

Language:

english

File:

PDF, 497 KB

english, 2015

75

Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque

Bis, Joshua C, Kavousi, Maryam, Franceschini, Nora, Isaacs, Aaron, Abecasis, Gonçalo R, Schminke, Ulf, Post, Wendy S, Smith, Albert V, Cupples, L Adrienne, Markus, Hugh S, Schmidt, Reinhold, Huffman,

Journal:

Nature Genetics

Year:

2011

Language:

english

File:

PDF, 637 KB

english, 2011

76

SHAVE: shrinkage estimator measured for multiple visits increases power in GWAS of quantitative traits

Meirelles, Osorio D, Ding, Jun, Tanaka, Toshiko, Sanna, Serena, Yang, Hsih-Te, Dudekula, Dawood B, Cucca, Francesco, Ferrucci, Luigi, Abecasis, Goncalo, Schlessinger, David

Journal:

European Journal of Human Genetics

Year:

2013

Language:

english

File:

PDF, 1.07 MB

english, 2013

77

An efficient and scalable analysis framework for variant extraction and refinement from population-scale DNA sequence data

Jun, Goo, Wing, Mary Kate, Abecasis, Gonçalo R., Kang, Hyun Min

Journal:

Genome Research

Year:

2015

Language:

english

File:

PDF, 1.05 MB

english, 2015

78

Comparing variant calling algorithms for target-exon sequencing in a large sample

Lo, Yancy, Kang, Hyun M, Nelson, Matthew R, Othman, Mohammad I, Chissoe, Stephanie L, Ehm, Margaret G, Abecasis, Gonçalo R, Zöllner, Sebastian

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 456 KB

english, 2015

79

Psoriasis Bench to Bedside

Nair, Rajan P., Ding, Jun, Duffin, Kristina Callis, Helms, Cynthia, Voorhees, John J., Krueger, Gerald G., Bowcock, Anne M., Abeçasis, Goncalo R., Elder, James T.

Journal:

Archives of Dermatology

Year:

2009

Language:

english

File:

PDF, 753 KB

english, 2009

80

eQTL mapping identifies insertion- and deletion-specific eQTLs in multiple tissues

Huang, Jinyan, Chen, Jun, Esparza, Jorge, Ding, Jun, Elder, James T., Abecasis, Goncalo R., Lee, Young-Ae, Mark Lathrop, G., Moffatt, Miriam F., Cookson, William O. C., Liang, Liming

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 365 KB

english, 2015

81

Assessment of the Psoriatic Transcriptome in a Large Sample: Additional Regulated Genes and Comparisons with In Vitro Models

Gudjonsson, Johann E, Ding, Jun, Johnston, Andrew, Tejasvi, Trilokraj, Guzman, Andrew M, Nair, Rajan P, Voorhees, John J, Abecasis, Goncalo R, Elder, James T

Journal:

The Journal of Investigative Dermatology

Year:

2010

Language:

english

File:

PDF, 4.44 MB

english, 2010

82

Improved Ancestry Estimation for both Genotyping and Sequencing Data using Projection Procrustes Analysis and Genotype Imputation

Wang, Chaolong, Zhan, Xiaowei, Liang, Liming, Abecasis, Gonçalo R., Lin, Xihong

Journal:

The American Journal of Human Genetics

Year:

2015

Language:

english

File:

PDF, 1.41 MB

english, 2015

83

QPLOT: A Quality Assessment Tool for Next Generation Sequencing Data

Li, Bingshan, Zhan, Xiaowei, Wing, Mary-Kate, Anderson, Paul, Kang, Hyun Min, Abecasis, Goncalo R.

Journal:

BioMed Research International

Year:

2013

Language:

english

File:

PDF, 431 KB

english, 2013

84

A Likelihood-Based Framework for Variant Calling and De Novo Mutation Detection in Families

Li, Bingshan, Chen, Wei, Zhan, Xiaowei, Busonero, Fabio, Sanna, Serena, Sidore, Carlo, Cucca, Francesco, Kang, Hyun M., Abecasis, Gonçalo R., Gibson, Greg

Journal:

Year:

2012

Language:

english

File:

PDF, 893 KB

english, 2012

85

Interpretation of Genetic Association Studies: Markers with Replicated Highly Significant Odds Ratios May Be Poor Classifiers

Jakobsdottir, Johanna, Gorin, Michael B., Conley, Yvette P., Ferrell, Robert E., Weeks, Daniel E., Abecasis, Gonçalo R.

Journal:

Year:

2009

Language:

english

File:

PDF, 215 KB

english, 2009

86

Calibrating the Performance of SNP Arrays for Whole-Genome Association Studies

Hao, Ke, Schadt, Eric E., Storey, John D., Abecasis, Gonçalo R.

Journal:

Year:

2008

Language:

english

File:

PDF, 418 KB

english, 2008

87

Genome-Wide Association Study of Plasma Polyunsaturated Fatty Acids in the InCHIANTI Study

Tanaka, Toshiko, Shen, Jian, Abecasis, Gonçalo R., Kisialiou, Aliaksei, Ordovas, Jose M., Guralnik, Jack M., Singleton, Andrew, Bandinelli, Stefania, Cherubini, Antonio, Arnett, Donna, Tsai, Michael Y

Journal:

Year:

2009

Language:

english

File:

PDF, 406 KB

english, 2009

88

Multiple Loci within the Major Histocompatibility Complex Confer Risk of Psoriasis

Feng, Bing-Jian, Sun, Liang-Dan, Soltani-Arabshahi, Razieh, Bowcock, Anne M., Nair, Rajan P., Stuart, Philip, Elder, James T., Schrodi, Steven J., Begovich, Ann B., Abecasis, Gonçalo R., Zhang, Xue-Ju

Journal:

Year:

2009

Language:

english

File:

PDF, 337 KB

english, 2009

89

Global Properties and Functional Complexity of Human Gene Regulatory Variation

Gaffney, Daniel J., Abecasis, Gonçalo R.

Journal:

Year:

2013

Language:

english

File:

PDF, 369 KB

english, 2013

90

Pervasive Sharing of Genetic Effects in Autoimmune Disease

Cotsapas, Chris, Voight, Benjamin F., Rossin, Elizabeth, Lage, Kasper, Neale, Benjamin M., Wallace, Chris, Abecasis, Gonçalo R., Barrett, Jeffrey C., Behrens, Timothy, Cho, Judy, De Jager, Philip L.,

Journal:

Year:

2011

Language:

english

File:

PDF, 224 KB

english, 2011

91

Comparison of Methods to Account for Relatedness in Genome-Wide Association Studies with Family-Based Data

Eu-ahsunthornwattana, Jakris, Miller, E. Nancy, Fakiola, Michaela, Jeronimo, Selma M. B., Blackwell, Jenefer M., Cordell, Heather J., Abecasis, Gonçalo R.

Journal:

Year:

2014

Language:

english

File:

PDF, 871 KB

english, 2014

92

Correcting for Sample Contamination in Genotype Calling of DNA Sequence Data

Flickinger, Matthew, Jun, Goo, Abecasis, Gonçalo R., Boehnke, Michael, Kang, Hyun Min

Journal:

The American Journal of Human Genetics

Year:

2015

Language:

english

File:

PDF, 298 KB

english, 2015

93

Author reply

Chew, Emily Y., Klein, Michael L., Clemons, Traci E., Agrón, Elvira, Abecasis, Gonçalo R.

Journal:

Year:

2015

Language:

english

File:

PDF, 91 KB

english, 2015

94

A Single SNP Surrogate for Genotyping HLA-C*06:02 in Diverse Populations

Stuart, Philip E, Tejasvi, Trilokraj, Shaiq, Pakeeza A, Kullavanijaya, Preya, Qamar, Raheel, Raja, Ghazala K, Li, Yanming, Voorhees, John J, Abecasis, Gonçalo R, Elder, James T, Nair, Rajan P

Journal:

The Journal of Investigative Dermatology

Year:

2015

Language:

english

File:

PDF, 95 KB

english, 2015

95

SHAVE: shrinkage estimator measured for multiple visits increases power in GWAS of quantitative traits

Meirelles, Osorio D, Ding, Jun, Tanaka, Toshiko, Sanna, Serena, Yang, Hsih-Te, Dudekula, Dawood B, Cucca, Francesco, Ferrucci, Luigi, Abecasis, Goncalo, Schlessinger, David

Journal:

European Journal of Human Genetics

Year:

2014

Language:

english

File:

PDF, 372 KB

english, 2014

96

Widespread non-additive and interaction effects within HLA loci modulate the risk of autoimmune diseases

Lenz, Tobias L, Deutsch, Aaron J, Han, Buhm, Hu, Xinli, Okada, Yukinori, Eyre, Stephen, Knapp, Michael, Zhernakova, Alexandra, Huizinga, Tom W J, Abecasis, Gonçalo, Becker, Jessica, Boeckxstaens, Guy

Journal:

Nature Genetics

Year:

2015

Language:

english

File:

PDF, 1.07 MB

english, 2015

97

E2-2 Protein and Fuchs's Corneal Dystrophy

Baratz, Keith H., Tosakulwong, Nirubol, Ryu, Euijung, Brown, William L., Branham, Kari, Chen, Wei, Tran, Khoa D., Schmid-Kubista, Katharina E., Heckenlively, John R., Swaroop, Anand, Abecasis, Goncalo

Journal:

Boston Medical and Surgical Journal

Year:

2010

Language:

english

File:

PDF, 879 KB

english, 2010

98

Positive association to IgE levels and a physical map of the 13q14 atopy locus

Anderson, Gavin G, Leaves, Nicholas I, Bhattacharyya, Sumit, Zhang, Youming, Walshe, Valerie, Broxholme, John, Abecasis, Gonçalo, Levy, Elaine, Zimmer, Michael, Cox, Roger, Cookson, William O C M

Journal:

European Journal of Human Genetics

Year:

2002

Language:

english

File:

PDF, 188 KB

english, 2002

99

Reply

Chew, Emily Y., Klein, Michael L., Clemons, Traci E., Agrón, Elvira, Abecasis, Gonçalo R.

Journal:

Year:

2015

Language:

english

File:

PDF, 80 KB

english, 2015

100

Transposição de grandes vasos congenitamente corrigida e endocardite de eletrocateter

Cardoso, Gonçalo, Abecasis, João, Ribeiras, Regina, Cavaco, Diogo, Andrade, Maria João, Mendes, Miguel

Journal:

Revista Portuguesa de Cardiologia

Year:

2014

File:

PDF, 835 KB

2014