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101

Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial

Ludwig, Christina, Gillet, Ludovic, Rosenberger, George, Amon, Sabine, Collins, Ben C, Aebersold, Ruedi

Journal:

Molecular Systems Biology

Year:

2018

Language:

english

File:

PDF, 1.48 MB

english, 2018

102

Modular microstructure design to build neuronal networks of defined functional connectivity

Forró, Csaba, Thompson-Steckel, Greta, Weaver, Sean, Weydert, Serge, Ihle, Stephan, Dermutz, Harald, Aebersold, Mathias J., Pilz, Raphael, Demkó, László, Vörös, János

Journal:

Biosensors and Bioelectronics

Year:

2018

Language:

english

File:

PDF, 27.87 MB

english, 2018

103

Catching Quality Before It Falls: Preventing Falls and Injuries in the Adult Emergency Department

Stoeckle, Ashley, Iseler, Jackeline I., Havey, Renee, Aebersold, Cassandra

Journal:

Journal of Emergency Nursing

Year:

2018

Language:

english

File:

PDF, 596 KB

english, 2018

104

Examining Interruptions in the Operating Room Using Simulation

Sirihorachai, Rattima, Aebersold, Michelle L., Sarter, Nadine B., Harris, Marcelline, Marsh, Valarie, Redman, Richard W.

Journal:

Clinical Simulation in Nursing

Year:

2018

Language:

english

File:

PDF, 274 KB

english, 2018

105

Proteomics goes parallel

Collins, Ben C, Aebersold, Ruedi

Journal:

Nature Biotechnology

Year:

2018

Language:

english

File:

PDF, 216 KB

english, 2018

106

Oncogene addiction as a foundation of targeted cancer therapy: the paradigm of the MET receptor tyrosine kinase

Orlando, Eleonora, Aebersold, Daniel Matthias, Medová, Michaela, Zimmer, Yitzhak

Journal:

Year:

2018

Language:

english

File:

PDF, 1.03 MB

english, 2018

107

INACSL Standards of Best Practice for Simulation: Past, Present, and Future

Sittner, Barbara J., Aebersold, Michelle L., Paige, Jane B., Graham, Leslie L. M., Schram, Andrea Parsons, Decker, Sharon I., Lioce, Lori

Journal:

Nursing Education Perspectives

Year:

2015

Language:

english

File:

PDF, 315 KB

english, 2015

108

CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation

Wongpalee, Somsakul Pop, Liu, Shiheng, Gallego-Bartolomé, Javier, Leitner, Alexander, Aebersold, Ruedi, Liu, Wanlu, Yen, Linda, Nohales, Maria A., Kuo, Peggy Hsuanyu, Vashisht, Ajay A., Wohlschlegel,

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 4.30 MB

english, 2019

109

Publisher Correction: OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

RÃ¶st, Hannes L., Rosenberger, George, Navarro, Pedro, Gillet, Ludovic, MiladinoviÄ, SaÅ¡a M., Schubert, Olga T., Wolski, Witold, Collins, Ben C., MalmstrÃ¶m, Johan, MalmstrÃ¶m, Lars, Aebersold, Rued

Journal:

Nature Biotechnology

Year:

2020

File:

PDF, 483 KB

2020

110

Use of virtual simulations for improving knowledge transfer among baccalaureate nursing students

Tschannen, Dana, Aebersold, Michelle, McLaughlin, Elizabeth, Bowen, Jessica, Fairchild, Jon

Journal:

Journal of Nursing Education and Practice

Year:

2012

Language:

english

File:

PDF, 74 KB

english, 2012

111

A national survey on radiation oncology patterns of practice in Switzerland during the COVID-19 pandemic: present changes and future perspectives

Achard, VÃ©rane, Aebersold, Daniel M., Said Allal, Abdelkarim, Andratschke, Nicolaus, Baumert, Brigitta G., Thomas Beer, Karl, Betz, Michael, Breuneval, Thomas, Bodis, Stephan, de Bari, Berardino, FÃ¶

Journal:

Radiotherapy and Oncology

Year:

2020

File:

PDF, 391 KB

2020

112

diaPASEF: parallel accumulationâserial fragmentation combined with data-independent acquisition

Meier, Florian, Brunner, Andreas-David, Frank, Max, Ha, Annie, Bludau, Isabell, Voytik, Eugenia, Kaspar-Schoenefeld, Stephanie, Lubeck, Markus, Raether, Oliver, Bache, Nicolai, Aebersold, Ruedi, Colli

Journal:

Year:

2020

File:

PDF, 4.03 MB

2020

113

Microfabricated device coupled with an electrospray ionization quadrupole time-of-flight mass spectrometer: protein identifications based on enhanced-resolution mass spectrometry and tandem mass spectrometry data

Daniel Figeys, Chris Lock, Lorne Taylor, Ruedi Aebersold

Journal:

Rapid Communications in Mass Spectrometry

Year:

1998

Language:

english

File:

PDF, 363 KB

english, 1998

114

Quantitative in vitro kinase reaction as a guide for phosphoprotein analysis by mass spectrometry

David R. Goodlett, Ruedi Aebersold, Julian D. Watts

Journal:

Rapid Communications in Mass Spectrometry

Year:

2000

Language:

english

File:

PDF, 240 KB

english, 2000

115

Characterization of an activated ribosomal S6 kinase variant from maturing sea star oocytes: Association with phosphatase 2A and substrate specificity

Lorin A. Charlton, Mohamed Sayed, Ian Clark-Lewis, Ruedi Aebersold, Steven L. Pelech

Journal:

Journal of Cellular Biochemistry

Year:

1999

Language:

english

File:

PDF, 386 KB

english, 1999

116

Proteins of rat serum: III. Gender-related differences in protein concentration under baseline conditions and upon experimental inflammation as evaluated by two-dimensional electrophoresis

Ingrid Miller, Paul Haynes, Ivano Eberini, Manfred Gemeiner, Ruedi Aebersold, Elisabetta Gianazza

Journal:

ELECTROPHORESIS

Year:

1999

Language:

english

File:

PDF, 182 KB

english, 1999

117

Protein analysis by mass spectrometry and sequence database searching: Tools for cancer research in the post-genomic era

Steven P. Gygi, David K. M. Han, Anne-Claude Gingras, Nahum Sonenberg, Ruedi Aebersold

Journal:

ELECTROPHORESIS

Year:

1999

Language:

english

File:

PDF, 212 KB

english, 1999

118

Analysis of membrane proteins by two-dimensional electrophoresis: Comparison of the proteins extracted from normal or Plasmodium falciparum - infected erythrocyte ghosts

Thierry Rabilloud, Thierry Blisnick, Manfred Heller, Sylvie Luche, Ruedi Aebersold, Joël Lunardi, Catherine Braun-Breton

Journal:

ELECTROPHORESIS

Year:

1999

Language:

english

File:

PDF, 411 KB

english, 1999

119

A web site for the Rat Serum Protein Study Group

Ivano Eberini, Ingrid Miller, Manfred Gemeiner, Paul Haynes, Ruedi Aebersold, Lina Puglisi, Cesare R. Sirtori, Elisabetta Gianazza

Journal:

ELECTROPHORESIS

Year:

1999

Language:

english

File:

PDF, 255 KB

english, 1999

120

Comprehensive analyses of prostate gene expression: Convergence of expressed sequence tag databases, transcript profiling and proteomics

Peter S. Nelson, David Han, Yvan Rochon, Garry L. Corthals, Biaoyang Lin, Adam Monson, Vilaska Nguyen, B. Robert Franza, Stephen R. Plymate, Ruedi Aebersold, Leroy Hood

Journal:

ELECTROPHORESIS

Year:

2000

Language:

english

File:

PDF, 746 KB

english, 2000

121

Human papillomavirus positive squamous cell carcinoma of the oropharynx : A radiosensitive subgroup of head and neck carcinoma

Katja Lindel, Karl T. Beer, Jean Laissue, Richard H. Greiner, Daniel M. Aebersold

Journal:

Year:

2001

Language:

english

File:

PDF, 127 KB

english, 2001

122

Involvement of the hepatocyte growth factor/scatter factor receptor c–met and of Bcl–xL in the resistance of oropharyngeal cancer to ionizing radiation

Daniel M. Aebersold, Attila Kollar, Karl T. Beer, Jean Laissue, Richard H. Greiner, Valentin Djonov

Journal:

International Journal of Cancer

Year:

2001

Language:

english

File:

PDF, 4.02 MB

english, 2001

123

Proteins of rat serum V: Adjuvant arthritis and its modulation by nonsteroidal anti-inflammatory drugs

Ivano Eberini, Davide Agnello, Ingrid Miller, Pia Villa, Maddalena Fratelli, Pietro Ghezzi, Manfred Gemeiner, Jason Chan, Ruedi Aebersold, Elisabetta Gianazza

Journal:

ELECTROPHORESIS

Year:

2000

Language:

english

File:

PDF, 462 KB

english, 2000

124

A comprehensive characterization of the T-cell antigen receptor complex composition by microcapillary liquid chromatography-tandem mass spectrometry

Manfred Heller, David R. Goodlett, Julian D. Watts, Ruedi Aebersold

Journal:

ELECTROPHORESIS

Year:

2000

Language:

english

File:

PDF, 285 KB

english, 2000

125

Approaching complete peroxisome characterization by gas-phase fractionation

Eugene C. Yi, Marcello Marelli, Hookeun Lee, Samuel O. Purvine, Ruedi Aebersold, John D. Aitchison, David R. Goodlett

Journal:

ELECTROPHORESIS

Year:

2002

Language:

english

File:

PDF, 173 KB

english, 2002

126

CD28 stimulation regulates its association with N-ethylmaleimide-sensitive fusion protein and other proteins involved in vesicle sorting

Manfred Heller, Julian D. Watts, Ruedi Aebersold

Journal:

Year:

2001

Language:

english

File:

PDF, 149 KB

english, 2001

127

Mass spectrometric characterization of proteins extracted from Jurkat T cell detergent-resistant membrane domains

Priska D. von Haller, Sam Donohoe, David R. Goodlett, Ruedi Aebersold, Julian D. Watts

Journal:

Year:

2001

Language:

english

File:

PDF, 128 KB

english, 2001

128

ProbID: A probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data

Ning Zhang, Ruedi Aebersold, Benno Schwikowski

Journal:

Year:

2002

Language:

english

File:

PDF, 100 KB

english, 2002

129

Synthesis, crystal structure, magnetic properties, and spin densities of a triazole-nitronyl-nitroxide radical

Dr. Yu Pei, Prof. Olivier Kahn, Dr. Michael A. Aebersold, Dr. Lahcène Ouahab, Françoise Le Berre, Dr. Luca Pardi, Dr. Jean Louis Tholence

Journal:

Advanced Materials

Year:

1994

Language:

english

File:

PDF, 264 KB

english, 1994

130

ChemInform Abstract: Magnetic Excitations in Polyoxometalate Clusters Observed by Inelastic Neutron Scattering: Evidence for Anisotropic Ferromagnetic Exchange Interactions in the Tetrameric Cobalt(II) Cluster [Co4(H2O)2 (PW9O34)2]10-. Comparison with the Magnetic and Specific Heat Properties.

Hanspeter Andres, Juan M. Clemente-Juan, Michael Aebersold, Hans U. Guedel, Eugenio Coronado, Herma Buettner, Gordon Kearly, Julio Melero, Ramon Burriel

Journal:

Year:

2000

File:

PDF, 32 KB

2000

131

ChemInform Abstract: Magnetic Excitations in Polyoxometalate Clusters Observed by Inelastic Neutron Scattering: Evidence for Ferromagnetic Exchange Interactions and Spin Anisotropy in the Tetrameric Nickel(II) Cluster [Ni4(H2O)2 (PW9O34)2]10- and Comparison with the Magnetic Properties.

Juan M. Clemente-Juan, Hanspeter Andres, Juan J. Borras-Almenar, Eugenio Coronado, Hans U. Guedel, Michael Aebersold, Gordon Kearly, Herma Buettner, Markus Zolliker

Journal:

Year:

2000

File:

PDF, 33 KB

2000

132

ChemInform Abstract: Mass Spectrometry in Proteomics

Ruedi Aebersold, David R. Goodlett

Journal:

Year:

2001

File:

PDF, 23 KB

2001

133

Quantitative Protein Analysis by Solid Phase Isotope Tagging and Mass Spectrometry

Huilin Zhou, Rosemary Boyle, Ruedi Aebersold

Journal:

Year:

2004

File:

PDF, 7 KB

2004

134

N-glycoprotein profiling of lung adenocarcinoma pleural effusions by shotgun proteomics

Alex Soltermann, Reto Ossola, Sandra Kilgus-Hawelski, Arnold von Eckardstein, Tobias Suter, Ruedi Aebersold, Holger Moch

Journal:

Cancer Cytopathology

Year:

2008

Language:

english

File:

PDF, 333 KB

english, 2008

135

Immunologic memory to phosphorylcholine (PC) VIII. Expression of the VH−12 gene product in the response to PC-keyhole limpet hernocyanin

Marvin B. Rittenberg, Robert W. Glanville, Ruedi H. Aebersold, Sandra P. Chang, Mckay Brown

Journal:

European Journal of Immunology

Year:

1986

Language:

english

File:

PDF, 610 KB

english, 1986

136

N-terminal and internal sequence determination of microgram amounts of proteins separated by isoelectric focusing in immobilized pH gradients

Dr. Ruedi H. Aebersold, Gary Pipes, Leroy E. Hood, Stephen B. H. Kent

Journal:

ELECTROPHORESIS

Year:

1988

Language:

english

File:

PDF, 1.25 MB

english, 1988

137

Sequence analysis of proteins separated by polyacrylamide gel electrophoresis: Towards an integrated protein database

Dr. Ruedi Aebersold, John Leavitt

Journal:

ELECTROPHORESIS

Year:

1990

Language:

english

File:

PDF, 1.31 MB

english, 1990

138

Purification and identification of tyrosine-phosphorylated proteins from B lymphocytes stimulated through the antigen receptor

Michael R. Gold, Tom Yungwirth, Claire L. Sutherland, Robert J. Ingham, Daisy Vianzon, Readman Chiu, Inge Van Oostveen, Hamish D. Morrison, Dr. Ruedi Aebersold

Journal:

ELECTROPHORESIS

Year:

1994

Language:

english

File:

PDF, 1.44 MB

english, 1994

139

Mass spectrometric approaches for the identification of gel-separated proteins

Dr. Scott D. Patterson, Ruedi Aebersold

Journal:

ELECTROPHORESIS

Year:

1995

Language:

english

File:

PDF, 2.93 MB

english, 1995

140

Characterization of human serum amyloid A protein isoforms separated by two-dimensional electrophoresis by liquid chromatography/electrospray ionization tandem mass spectrometry

Axel Ducret, Cathrine Foyn Bruun, Edward J. Bures, Gudmund Marhaug, Gunnar Husby, Dr. Ruedi Aebersold

Journal:

ELECTROPHORESIS

Year:

1996

Language:

english

File:

PDF, 1.10 MB

english, 1996

141

High sensitivity identification of proteins by electrospray ionization tandem mass spectrometry: Initial com- parison between an ion trap mass spectrometer and a triple quadrupole mass spectrometer

Daniel Figeys, Dr. Ruedi Aebersold

Journal:

ELECTROPHORESIS

Year:

1997

Language:

english

File:

PDF, 773 KB

english, 1997

142

High sensitivity analysis of proteins and peptides by capillary electrophoresis-tandem mass spectrometry: Recent developments in technology and applications

Dr. Daniel Figeys, Ruedi Aebersold

Journal:

ELECTROPHORESIS

Year:

1998

Language:

english

File:

PDF, 1023 KB

english, 1998

143

Identification of gel-separated proteins by liquid chromatography-electrospray tandem mass spectrometry: Comparison of methods and their limitations

Paul A. Haynes, Natelaine Fripp, Prof. Ruedi Aebersold

Journal:

ELECTROPHORESIS

Year:

1998

Language:

english

File:

PDF, 855 KB

english, 1998

144

Proteins of rat serum: I. Establishing a reference two-dimensional electrophoresis map by immunodetection and microbore high performance liquid chromatography-electrospray mass spectrometry

Paul Haynes, Ingrid Miller, Ruedi Aebersold, Manfred Gemeiner, Ivano Eberini, Maria Rosa Lovati, Cristina Manzoni, Mara Vignati, Dr. Elisabetta Gianazza

Journal:

ELECTROPHORESIS

Year:

1998

Language:

english

File:

PDF, 1.08 MB

english, 1998

145

Proteins of rat serum: II. Influence of some biological parameters of the two-dimensional electrophoresis pattern

Ingrid Miller, Paul Haynes, Manfred Gemeiner, Ruedi Aebersold, Cristina Manzoni, Maria Rosa Lovati, Mara Vignati, Ivano Eberini, Dr. Elisabetta Gianazza

Journal:

ELECTROPHORESIS

Year:

1998

Language:

english

File:

PDF, 908 KB

english, 1998

146

Electrophoresis combined with novel mass spectrometry techniques: Powerful tools for the analysis of proteins and proteomes

Dr. Daniel Figeys, Steven P. Gygi, Yanni Zhang, Julian Watts, Ming Gu, Ruedi Aebersold

Journal:

ELECTROPHORESIS

Year:

1998

Language:

english

File:

PDF, 928 KB

english, 1998

147

Proteome analysis: Biological assay or data archive?

Paul A. Haynes, Steven P. Gygi, Daniel Figeys, Professor Ruedi Aebersold

Journal:

ELECTROPHORESIS

Year:

1998

Language:

english

File:

PDF, 1.17 MB

english, 1998

148

Optimization of solid phase microextraction - capillary zone electrophoresis - mass spectrometry for high sensitivity protein identification

Dr. Daniel Figeys, Yanni Zhang, Ruedi Aebersold

Journal:

ELECTROPHORESIS

Year:

1998

Language:

english

File:

PDF, 1015 KB

english, 1998

149

MET inhibition in tumor cells by PHA665752 impairs homologous recombination repair of DNA double strand breaks

Michaela Medová, Daniel M Aebersold, Yitzhak Zimmer

Journal:

International Journal of Cancer

Year:

2012

Language:

english

File:

PDF, 673 KB

english, 2012

150

Evaluation of Two-Dimensional Phosphopeptide Maps by Electrospray Ionization Mass Spectrometry of Recovered Peptides

M. Affolter, J.D. Watts, D.L. Krebs, R. Aebersold

Journal:

Analytical Biochemistry

Year:

1994

File:

PDF, 788 KB

1994