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1

Network pharmacology applications to map the unexplored target space and therapeutic potential of natural products

Kibble, Milla, Saarinen, Niina, Tang, Jing, Wennerberg, Krister, Mäkelä, Sari, Aittokallio, Tero

Journal:

Natural Product Reports

Year:

2015

Language:

english

File:

PDF, 982 KB

english, 2015

2

Hierarchical grid transformation for image warping in the analysis of two-dimensional electrophoresis gels

Jussi Salmi, Tero Aittokallio, Jan Westerholm, Matias Griese, Arsi Rosengren, Tuula A. Nyman, Riitta Lahesmaa, Olli Nevalainen

Journal:

Year:

2002

Language:

english

File:

PDF, 334 KB

english, 2002

3

Totally passive wireless biopotential measurement sensor by utilizing inductively coupled resonance circuits

J. Riistama, E. Aittokallio, J. Verho, J. Lekkala

Journal:

Sensors and Actuators A: Physical

Year:

2010

Language:

english

File:

PDF, 1.14 MB

english, 2010

4

Comparison of PDQuest and Progenesis software packages in the analysis of two-dimensional electrophoresis gels

Arsi T. Rosengren, Jussi M. Salmi, Tero Aittokallio, Jan Westerholm, Riitta Lahesmaa, Tuula A. Nyman, Olli S. Nevalainen

Journal:

Year:

2003

Language:

english

File:

PDF, 368 KB

english, 2003

5

Genetic variants and their interactions in disease risk prediction – machine learning and network perspectives

Sebastian Okser, Tapio Pahikkala, Tero Aittokallio

Journal:

Year:

2013

Language:

english

File:

PDF, 614 KB

english, 2013

6

Improving the false nearest neighbors method with graphical analysis

Aittokallio, T., Gyllenberg, M., Hietarinta, J., Kuusela, T., Multamäki, T.

Journal:

Physical Review E

Year:

1999

Language:

english

File:

PDF, 197 KB

english, 1999

7

MicroRNA-135b regulates ERα, AR and HIF1AN and affects breast and prostate cancer cell growth

Aakula, Anna, Leivonen, Suvi-Katri, Hintsanen, Petteri, Aittokallio, Tero, Ceder, Yvonne, Børresen-Dale, Anne-Lise, Perälä, Merja, Östling, Päivi, Kallioniemi, Olli

Journal:

Molecular Oncology

Year:

2015

Language:

english

File:

PDF, 2.25 MB

english, 2015

8

Improving missing value estimation in microarray data with gene ontology

Tuikkala, J., Elo, L., Nevalainen, O. S., Aittokallio, T.

Journal:

Year:

2006

Language:

english

File:

PDF, 171 KB

english, 2006

9

Multi-Omics Studies towards Novel Modulators of Influenza A Virus–Host Interaction

Söderholm, Sandra, Fu, Yu, Gaelings, Lana, Belanov, Sergey, Yetukuri, Laxman, Berlinkov, Mikhail, Cheltsov, Anton, Anders, Simon, Aittokallio, Tero, Nyman, Tuula, Matikainen, Sampsa, Kainov, Denis

Journal:

Year:

2016

Language:

english

File:

PDF, 3.89 MB

english, 2016

10

Breeze: an integrated quality control and data analysis application for high-throughput drug screening

Potdar, Swapnil, Ianevski, Aleksandr, Mpindi, John-Patrick, Bychkov, Dmitrii, Fiere, ClÃ©ment, Ianevski, Philipp, Yadav, Bhagwan, Wennerberg, Krister, Aittokallio, Tero, Kallioniemi, Olli, Saarela, Ja

Journal:

Year:

2020

File:

PDF, 288 KB

2020

11

KIT pathway upregulation predicts dasatinib efficacy in acute myeloid leukemia

Malani, Disha, Yadav, Bhagwan, Kumar, Ashwini, Potdar, Swapnil, Kontro, Mika, Kankainen, Matti, Javarappa, Komal K., Porkka, Kimmo, Wolf, Maija, Aittokallio, Tero, Wennerberg, Krister, Heckman, Caroli

Journal:

Year:

2020

File:

PDF, 644 KB

2020

12

Analysis of similarity of electrophoretic patterns in mRNA differential display

Tero Aittokallio, Pekka Ojala, Timo J. Nevalainen, Olli Nevalainen

Journal:

ELECTROPHORESIS

Year:

2000

Language:

english

File:

PDF, 972 KB

english, 2000

13

Automated detection of differentially expressed fragments in mRNA differential display

Tero Aittokallio, Pekka Ojala, Timo J. Nevalainen, Olli Nevalainen

Journal:

ELECTROPHORESIS

Year:

2001

Language:

english

File:

PDF, 284 KB

english, 2001

14

Kinetics and STAT4- or STAT6-mediated regulation of genes involved in lymphocyte polarization to Th1 and Th2 cells

Riikka J. Lund, Emmi K. Ylikoski, Tero Aittokallio, Olli Nevalainen, Riitta Lahesmaa

Journal:

European Journal of Immunology

Year:

2003

Language:

english

File:

PDF, 572 KB

english, 2003

15

Computer-assisted identification of multitrace electrophoretic patterns in differential display experiments

Heidi Vähämaa, Pekka Ojala, Tapio Pahikkala, Olli S. Nevalainen, Riitta Lahesmaa, Tero Aittokallio

Journal:

ELECTROPHORESIS

Year:

2007

Language:

english

File:

PDF, 736 KB

english, 2007

16

Adjustment of the Human Respiratory System to Increased Upper Airway Resistance During Sleep

T. Aittokallio, M. Gyllenberg, O. Polo

Journal:

Bulletin of Mathematical Biology

Year:

2002

Language:

english

File:

PDF, 464 KB

english, 2002

17

Classification of Nasal Inspiratory Flow Shapes by Attributed Finite Automata

T. Aittokallio, O. Nevalainen, U. Pursiheimo, T. Saaresranta, O. Polo

Journal:

Computers and Biomedical Research

Year:

1999

Language:

english

File:

PDF, 305 KB

english, 1999

18

Geometrical distortions in two-dimensional gels: applicable correction methods

T. Aittokallio, J. Salmi, T.A. Nyman, O.S. Nevalainen

Journal:

Journal of Chromatography B

Year:

2005

Language:

english

File:

PDF, 380 KB

english, 2005

19

Erratum to “Geometrical distortions in two-dimensional gels: applicable correction methods”: [J. Chromatogr. B 815 (2005) 25–37]

T. Aittokallio, J. Salmi, T.A. Nyman, O.S. Nevalainen

Journal:

Journal of Chromatography B

Year:

2005

Language:

english

File:

PDF, 30 KB

english, 2005

20

Can carotid body perfusion act as a respiratory controller?

Arho Virkki, Olli Polo, Mats Gyllenberg, Tero Aittokallio

Journal:

Journal of Theoretical Biology

Year:

2007

Language:

english

File:

PDF, 371 KB

english, 2007

21

Ultrasound accelerated esterification of bile acids

Antti Grönroos, Nina Aittokallio, Erkki Kolehmainen

Journal:

Ultrasonics Sonochemistry

Year:

2004

Language:

english

File:

PDF, 313 KB

english, 2004

22

Feature learning with a genetic algorithm for fluorescence fingerprinting of plant species

C.M Codrea, T Aittokallio, M Keränen, E Tyystjärvi, O.S Nevalainen

Journal:

Pattern Recognition Letters

Year:

2003

Language:

english

File:

PDF, 174 KB

english, 2003

23

State of vigilance, oestrogen replacement therapy, and lipid profile as modifiers of nocturnal movement-induced heart rate responses

Irina Virtanen, Eeva Ekholm, Tero Aittokallio, Jarno Tähtinen, Jussi Salmi, Jaakko Järvi, Päivi Polo-Kantola, Olli Polo

Journal:

Clinical Physiology and Functional Imaging

Year:

2003

Language:

english

File:

PDF, 138 KB

english, 2003

24

Quantitative maps of genetic interactions in yeast - Comparative evaluation and integrative analysis

Rolf O Lindén, Ville-Pekka Eronen, Tero Aittokallio

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 1.44 MB

english, 2011

25

A comparative evaluation of software for the analysis of liquid chromatography-tandem mass spectrometry data from isotope coded affinity tag experiments

Robert Moulder, Jan-Jonas Filén, Jussi Salmi, Mikko Katajamaa, Olli S. Nevalainen, Matej Oresic, Tero Aittokallio, Riitta Lahesmaa, Tuula A. Nyman

Journal:

Year:

2005

Language:

english

File:

PDF, 311 KB

english, 2005

26

Alignment of LC-MS images, with applications to biomarker discovery and protein identification

Mathias Vandenbogaert, Sébastien Li-Thiao-Té, Hans-Michael Kaltenbach, Runxuan Zhang, Tero Aittokallio, Benno Schwikowski

Journal:

Year:

2008

Language:

english

File:

PDF, 524 KB

english, 2008

27

Filtering strategies for improving protein identification in high-throughput MS/MS studies

Jussi Salmi, Tuula A. Nyman, Olli S. Nevalainen, Tero Aittokallio

Journal:

Year:

2009

Language:

english

File:

PDF, 322 KB

english, 2009

28

Mahalanobis distance screening of Arabidopsis mutants with chlorophyll fluorescence

Marius C. Codrea, Marja Hakala-Yatkin, Anna Kårlund-Marttila, Ladislav Nedbal, Tero Aittokallio, Olli S. Nevalainen, Esa Tyystjärvi

Journal:

Photosynthesis Research

Year:

2010

Language:

english

File:

PDF, 451 KB

english, 2010

29

CPAP adherence and partial upper airway obstruction during sleep

Ulla Anttalainen, Tarja Saaresranta, Nea Kalleinen, Jenni Aittokallio, Tero Vahlberg, Olli Polo

Journal:

Sleep and Breathing

Year:

2007

Language:

english

File:

PDF, 221 KB

english, 2007

30

Model-Based Analysis of Mechanisms Responsible for Sleep-Induced Carbon Dioxide Differences

T. Aittokallio, M. Gyllenberg, O. Polo, J. Toivonen, A. Virkki

Journal:

Bulletin of Mathematical Biology

Year:

2006

Language:

english

File:

PDF, 294 KB

english, 2006

31

An update on clinical proteomics in Alzheimer’s research

Minna A. Korolainen, Tuula A. Nyman, Tero Aittokallio, Tuula Pirttilä

Journal:

Journal of Neurochemistry

Year:

2010

Language:

english

File:

PDF, 821 KB

english, 2010

32

Overnight variability in transcutaneous carbon dioxide predicts vascular impairment in women

Jenni Aittokallio, Olli Polo, Jukka Hiissa, Arho Virkki, Jyri Toikka, Olli Raitakari, Tarja Saaresranta, Tero Aittokallio

Journal:

Experimental Physiology

Year:

2008

Language:

english

File:

PDF, 480 KB

english, 2008

33

Impact of menopause on the manifestation and severity of sleep-disordered breathing

ULLA ANTTALAINEN, TARJA SAARESRANTA, JENNI AITTOKALLIO, NEA KALLEINEN, TERO VAHLBERG, IRINA VIRTANEN, OLLI POLO

Journal:

Acta Obstetricia et Gynecologica Scandinavica

Year:

2006

Language:

english

File:

PDF, 83 KB

english, 2006

34

Mining high-throughput screens for cancer drug targets—lessons from yeast chemical-genomic profiling and synthetic lethality

Marja A. Heiskanen, Tero Aittokallio

Journal:

Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery

Year:

2012

Language:

english

File:

PDF, 1.82 MB

english, 2012

35

Overnight features of transcutaneous carbon dioxide measurement as predictors of metabolic status

Arho Virkki, Olli Polo, Tarja Saaresranta, Anne Laapotti-Salo, Mats Gyllenberg, Tero Aittokallio

Journal:

Artificial Intelligence in Medicine

Year:

2008

Language:

english

File:

PDF, 285 KB

english, 2008

36

Inspiratory flow shape clustering: An automated method to monitor upper airway performance during sleep

Tero Aittokallio, Jani S. Malminen, Tapio Pahikkala, Olli Polo, Olli S. Nevalainen

Journal:

Computer Methods and Programs in Biomedicine

Year:

2007

Language:

english

File:

PDF, 570 KB

english, 2007

37

A human ImmunoChip cDNA microarray provides a comprehensive tool to study immune responses

T. Nikula, A. West, M. Katajamaa, T. Lönnberg, R. Sara, T. Aittokallio, O.S. Nevalainen, R. Lahesmaa

Journal:

Journal of Immunological Methods

Year:

2005

Language:

english

File:

PDF, 937 KB

english, 2005

38

Detection of high-frequency respiratory movements during sleep

T Aittokallio, M Gyllenberg, J Järvi, O Nevalainen, O Polo

Journal:

Computer Methods and Programs in Biomedicine

Year:

2000

Language:

english

File:

PDF, 422 KB

english, 2000

39

Missing value imputation improves clustering and interpretation of gene expression microarray data

Johannes Tuikkala, Laura L Elo, Olli S Nevalainen, Tero Aittokallio

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 606 KB

english, 2008

40

A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments

Teemu D Laajala, Sunil Raghav, Soile Tuomela, Riitta Lahesmaa, Tero Aittokallio, Laura L Elo

Journal:

Year:

2009

Language:

english

File:

PDF, 348 KB

english, 2009

41

Early suppression of immune response pathways characterizes children with prediabetes in genome-wide gene expression profiling

Laura L. Elo, Juha Mykkänen, Tuomas Nikula, Henna Järvenpää, Satu Simell, Tero Aittokallio, Heikki Hyöty, Jorma Ilonen, Riitta Veijola, Tuula Simell, Mikael Knip, Olli Simell, Riitta Lahesmaa

Journal:

Journal of Autoimmunity

Year:

2010

Language:

english

File:

PDF, 391 KB

english, 2010

42

Non-invasive respiratory monitoring during wakefulness and sleep in pre- and postmenopausal women

Jenni Aittokallio, Arho Virkki, Tero Aittokallio, Tarja Saaresranta, Päivi Polo-Kantola, Olli Polo

Journal:

Respiratory Physiology & Neurobiology

Year:

2006

Language:

english

File:

PDF, 249 KB

english, 2006

43

Gender differences in age and BMI distributions in partial upper airway obstruction during sleep

Ulla Anttalainen, Tarja Saaresranta, Nea Kalleinen, Jenni Aittokallio, Tero Vahlberg, Olli Polo

Journal:

Respiratory Physiology & Neurobiology

Year:

2007

Language:

english

File:

PDF, 1.09 MB

english, 2007

44

Sleep quality, daytime sleepiness and fasting insulin levels in women with chronic obstructive pulmonary disease

Tarja Saaresranta, Kerttu Irjala, Tero Aittokallio, Olli Polo

Journal:

Respiratory Medicine

Year:

2005

Language:

english

File:

PDF, 361 KB

english, 2005

45

Understanding sleep-disordered breathing through mathematical modelling

Tero Aittokallio, Arho Virkki, Olli Polo

Journal:

Sleep Medicine Reviews

Year:

2009

Language:

english

File:

PDF, 986 KB

english, 2009

46

A model of a snorer's upper airway

Tero Aittokallio, Mats Gyllenberg, Olli Polo

Journal:

Mathematical Biosciences

Year:

2001

Language:

english

File:

PDF, 283 KB

english, 2001

47

Climacteric vasomotor symptoms do not predict nocturnal breathing abnormalities in postmenopausal women

Päivi Polo-Kantola, Esa Rauhala, Tarja Saaresranta, Tero Aittokallio, Risto Erkkola, Olli Polo

Journal:

Year:

2001

Language:

english

File:

PDF, 92 KB

english, 2001

48

Effect of medroxyprogesterone on inspiratory flow shapes during sleep in postmenopausal women

Tarja Saaresranta, Tero Aittokallio, Päivi Polo-Kantola, Hans Helenius, Olli Polo

Journal:

Respiratory Physiology & Neurobiology

Year:

2003

Language:

english

File:

PDF, 260 KB

english, 2003

49

Dealing with missing values in large-scale studies: microarray data imputation and beyond

Aittokallio, T.

Journal:

Briefings in Bioinformatics

Year:

2010

Language:

english

File:

PDF, 152 KB

english, 2010

50

A statistical score for assessing the quality of multiple sequence alignments

Virpi Ahola, Tero Aittokallio, Mauno Vihinen, Esa Uusipaikka

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.20 MB

english, 2006