Alexander Bockmayr: search on Z-Library

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1

Elucidating temporal resource allocation and diurnal dynamics in phototrophic metabolism using conditional FBA

Rügen, Marco, Bockmayr, Alexander, Steuer, Ralf

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.76 MB

english, 2015

2

Resolving challenges in deep learning-based analyses of histopathological images using explanation methods

HÃ¤gele, Miriam, Seegerer, Philipp, Lapuschkin, Sebastian, Bockmayr, Michael, Samek, Wojciech, Klauschen, Frederick, MÃ¼ller, Klaus-Robert, Binder, Alexander

Journal:

Scientific Reports

Year:

2020

File:

PDF, 2.12 MB

2020

3

A model-based method for investigating bioenergetic processes in autotrophically growing eukaryotic microalgae: Application to the green algae Chlamydomonas reinhardtii

Guillaume Cogne, Marco Rügen, Alexander Bockmayr, Mariana Titica, Claude-Gilles Dussap, Jean-François Cornet, Jack Legrand

Journal:

Biotechnology Progress

Year:

2011

Language:

english

File:

PDF, 1.79 MB

english, 2011

4

Flux coupling analysis of metabolic networks is sensitive to missing reactions

Sayed-Amir Marashi, Alexander Bockmayr

Journal:

Year:

2011

Language:

english

File:

PDF, 696 KB

english, 2011

5

Detecting infeasibility and generating cuts for mixed integer programming using constraint programming

Alexander Bockmayr, Nicolai Pisaruk

Journal:

Computers & Operations Research

Year:

2006

Language:

english

File:

PDF, 185 KB

english, 2006

6

A new constraint-based description of the steady-state flux cone of metabolic networks

Abdelhalim Larhlimi, Alexander Bockmayr

Journal:

Discrete Applied Mathematics

Year:

2009

Language:

english

File:

PDF, 655 KB

english, 2009

7

A multi-scale constraint programming model of alternative splicing regulation

Damien Eveillard, Delphine Ropers, Hidde de Jong, Christiane Branlant, Alexander Bockmayr

Journal:

Theoretical Computer Science

Year:

2004

Language:

english

File:

PDF, 294 KB

english, 2004

8

On the Chvátal rank of polytopes in the 0/1 cube

Alexander Bockmayr, Friedrich Eisenbrand, Mark Hartmann, Andreas S. Schulz

Journal:

Discrete Applied Mathematics

Year:

1999

Language:

english

File:

PDF, 82 KB

english, 1999

9

FFCA: a feasibility-based method for flux coupling analysis of metabolic networks

Laszlo David, Sayed-Amir Marashi, Abdelhalim Larhlimi, Bettina Mieth, Alexander Bockmayr

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 264 KB

english, 2011

10

A note on a canonical theory with undecidable unification and matching problem

Alexander Bockmayr

Journal:

Journal of Automated Reasoning

Year:

1987

Language:

english

File:

PDF, 132 KB

english, 1987

11

Conditional narrowing modulo a set of equations

Alexander Bockmayr

Journal:

Applicable Algebra in Engineering, Communication and Computing

Year:

1993

Language:

english

File:

PDF, 1.18 MB

english, 1993

12

How to realize LSE narrowing

Andreas Werner, Alexander Bockmayr, Stefan Krischer

Journal:

New Generation Computing

Year:

1998

Language:

english

File:

PDF, 1.75 MB

english, 1998

13

On unions and dominants of polytopes

Egon Balas, Alexander Bockmayr, Nicolai Pisaruk, Laurence Wolsey

Journal:

Mathematical Programming

Year:

2004

Language:

english

File:

PDF, 176 KB

english, 2004

14

Temporal constraints in the logical analysis of regulatory networks

Heike Siebert, Alexander Bockmayr

Journal:

Theoretical Computer Science

Year:

2008

Language:

english

File:

PDF, 908 KB

english, 2008

15

Modelling discrete optimisation problems inconstraint logic programming

Peter Barth, Alexander Bockmayr

Journal:

Annals of Operations Research

Year:

1998

Language:

english

File:

PDF, 215 KB

english, 1998

16

On flux coupling analysis of metabolic subsystems

Sayed-Amir Marashi, Laszlo David, Alexander Bockmayr

Journal:

Journal of Theoretical Biology

Year:

2012

Language:

english

File:

PDF, 455 KB

english, 2012

17

Time Series Dependent Analysis of Unparametrized Thomas Networks

Klarner, Hannes, Siebert, Heike, Bockmayr, Alexander

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 638 KB

english, 2012

18

Handbook of Automated Reasoning || Solving Numerical Constraints

Bockmayr, Alexander

Year:

2001

Language:

english

File:

PDF, 5.28 MB

english, 2001

19

Network reduction in metabolic pathway analysis: Elucidation of the key pathways involved in the photoautotrophic growth of the green alga Chlamydomonas reinhardtii

Marco Rügen, Alexander Bockmayr, Jack Legrand, Guillaume Cogne

Journal:

Metabolic Engineering

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

20

F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networks

Abdelhalim Larhlimi, Laszlo David, Joachim Selbig, Alexander Bockmayr

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 321 KB

english, 2012

21

Analysis of Metabolic Subnetworks by Flux Cone Projection

Sayed-Amir Marashi, Laszlo David, Alexander Bockmayr

Journal:

Algorithms for Molecular Biology

Year:

2012

Language:

english

File:

PDF, 311 KB

english, 2012

22

Analysis and Characterization of Asynchronous State Transition Graphs Using Extremal States

Therese Lorenz, Heike Siebert, Alexander Bockmayr

Journal:

Bulletin of Mathematical Biology

Year:

2013

Language:

english

File:

PDF, 654 KB

english, 2013

23

Flux modules in metabolic networks

Müller, Arne C., Bockmayr, Alexander

Journal:

Journal of Mathematical Biology

Year:

2014

Language:

english

File:

PDF, 526 KB

english, 2014

24

Preservation of dynamic properties in qualitative modeling frameworks for gene regulatory networks

Jamshidi, Shahrad, Siebert, Heike, Bockmayr, Alexander

Journal:

Year:

2013

Language:

english

File:

PDF, 477 KB

english, 2013

25

[Handbooks in Operations Research and Management Science] Discrete Optimization Volume 12 || Constraint Programming

Bockmayr, Alexander

Year:

2005

Language:

english

File:

PDF, 473 KB

english, 2005

26

Dynamic optimization of metabolic networks coupled with gene expression

Waldherr, Steffen, Oyarzún, Diego A., Bockmayr, Alexander

Journal:

Journal of Theoretical Biology

Year:

2015

Language:

english

File:

PDF, 1.37 MB

english, 2015

27

Computing Elementary Flux Modes Involving a Set of Target Reactions

David, Laszlo, Bockmayr, Alexander

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 264 KB

english, 2014

28

Generic flux coupling analysis

Reimers, Arne C., Goldstein, Yaron, Bockmayr, Alexander

Journal:

Mathematical Biosciences

Year:

2015

Language:

english

File:

PDF, 621 KB

english, 2015

29

Double and multiple knockout simulations for genome-scale metabolic network reconstructions

Goldstein, Yaron, Bockmayr, Alexander

Journal:

Algorithms for Molecular Biology

Year:

2015

Language:

english

File:

PDF, 486 KB

english, 2015

30

Branch and Infer: A Unifying Framework for Integer and Finite Domain Constraint Programming

Bockmayr, Alexander, Kasper, Thomas

Journal:

INFORMS Journal on Computing

Year:

1998

Language:

english

File:

PDF, 257 KB

english, 1998

31

[AIP COMPLIFE 2007: The Third International Symposium on Computational Life Science - ()] AIP Conference Proceedings - Minimal Direction Cuts in Metabolic Networks

Larhlimi, Abdelhalim, Bockmayr, Alexander, Siebes, Arno P. J. M., Berthold, Michael R., Glen, Robert C., Feelders, Ad J.

Year:

2007

Language:

english

File:

PDF, 854 KB

english, 2007

32

[ACM Press the 9th International Conference - Paris, France (2011.09.21-2011.09.23)] Proceedings of the 9th International Conference on Computational Methods in Systems Biology - CMSB '11 - Parameter inference for asynchronous logical networks using discrete time series

Klarner, Hannes, Siebert, Heike, Bockmayr, Alexander

Year:

2011

Language:

english

File:

PDF, 695 KB

english, 2011

33

Computing maximal and minimal trap spaces of Boolean networks

Klarner, Hannes, Bockmayr, Alexander, Siebert, Heike

Journal:

Natural Computing

Year:

2015

Language:

english

File:

PDF, 1.04 MB

english, 2015

34

Cutting Planes and the Elementary Closure in Fixed Dimension

Alexander Bockmayr and Friedrich Eisenbrand

Journal:

Mathematics of Operations Research

Year:

2001

Language:

english

File:

PDF, 358 KB

english, 2001

35

Cutting Planes and the Elementary Closure in Fixed Dimension

Bockmayr, Alexander, Eisenbrand, Friedrich

Journal:

Mathematics of Operations Research

Year:

2001

Language:

english

File:

PDF, 160 KB

english, 2001

36

A mixed-integer linear programming approach to the reduction of genome-scale metabolic networks

Röhl, Annika, Bockmayr, Alexander

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 712 KB

english, 2017

37

Cellular trade-offs and optimal resource allocation during cyanobacterial diurnal growth

Reimers, Alexandra-M., Knoop, Henning, Bockmayr, Alexander, Steuer, Ralf

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.11 MB

english, 2017

38

Computing irreversible minimal cut sets in genome-scale metabolic networks via flux cone projection

Röhl, Annika, Riou, Tanguy, Bockmayr, Alexander, Wren, Jonathan

Journal:

Year:

2018

Language:

english

File:

PDF, 459 KB

english, 2018

39

Formalizing Metabolic-Regulatory Networks by Hybrid Automata

Liu, Lin, Bockmayr, Alexander

Journal:

Acta Biotheoretica

Year:

2019

Language:

english

File:

PDF, 1.33 MB

english, 2019

40

Finding MEMo: minimum sets of elementary flux modes

Röhl, Annika, Bockmayr, Alexander

Journal:

Journal of Mathematical Biology

Year:

2019

Language:

english

File:

PDF, 961 KB

english, 2019

41

Formalizing Metabolic-Regulatory Networks by Hybrid Automata

Liu, Lin, Bockmayr, Alexander

Journal:

Acta Biotheoretica

Year:

2019

File:

PDF, 1.33 MB

2019

42

Machine learning analysis of DNA methylation profiles distinguishes primary lung squamous cell carcinomas from head and neck metastases

Jurmeister, Philipp, Bockmayr, Michael, Seegerer, Philipp, Bockmayr, Teresa, Treue, Denise, Montavon, Grégoire, Vollbrecht, Claudia, Arnold, Alexander, Teichmann, Daniel, Bressem, Keno, Schüller, Ulri

Journal:

Science Translational Medicine

Year:

2019

Language:

english

File:

PDF, 4.30 MB

english, 2019

43

Machine learning analysis of DNA methylation profiles distinguishes primary lung squamous cell carcinomas from head and neck metastases

Jurmeister, Philipp, Bockmayr, Michael, Seegerer, Philipp, Bockmayr, Teresa, Treue, Denise, Montavon, Grégoire, Vollbrecht, Claudia, Arnold, Alexander, Teichmann, Daniel, Bressem, Keno, Schüller, Ulri

Journal:

Science Translational Medicine

Year:

2019

File:

PDF, 4.30 MB

2019

44

Regulatory dynamic enzyme-cost flux balance analysis: A unifying framework for constraint-based modeling

Liu, Lin, Bockmayr, Alexander

Journal:

Journal of Theoretical Biology

Year:

2020

File:

PDF, 1.15 MB

2020