Alm, Eric: search on Z-Library

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51

Sa1064 The International Public Stool Bank: A Scalable Model for Standardized Screening and Processing of Donor Stool for Fecal Microbiota Transplantation

Smith, Mark B., Kassam, Zain, Burgess, James, Perrotta, Allison R., Burns, Laura J., Mendolia, Gina M., Dubois, Nancy, Edelstein, Carolyn, Noh, Andrew, Alm, Eric

Journal:

Gastroenterology

Year:

2015

Language:

english

File:

PDF, 450 KB

english, 2015

52

From pure to hybrid professionalism in post-NPM activation reform: The institutional work of frontline managers

Breit, Eric, Fossestøl, Knut, Andreassen, Tone Alm

Journal:

Journal of Professions and Organization

Year:

2017

Language:

english

File:

PDF, 398 KB

english, 2017

53

A putative causal relationship between genetically determined female body shape and posttraumatic stress disorder

Polimanti, Renato, Amstadter, Ananda B., Stein, Murray B., Almli, Lynn M., Baker, Dewleen G., Bierut, Laura J., Bradley, Bekh, Farrer, Lindsay A., Johnson, Eric O., King, Anthony, Kranzler, Henry R.,

Journal:

Genome Medicine

Year:

2017

Language:

english

File:

PDF, 669 KB

english, 2017

54

Two dynamic regimes in the human gut microbiome

Gibbons, Sean M., Kearney, Sean M., Smillie, Chris S., Alm, Eric J., Borenstein, Elhanan

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.89 MB

english, 2017

55

Co-evolution and Co-speciation of Host-Gut Bacteria Systems

Groussin, Mathieu, Mazel, Florent, Alm, Eric J.

Journal:

Cell Host & Microbe

Year:

2020

File:

PDF, 1.06 MB

2020

56

Erratum to: Molecular Evolution of Aminoacyl tRNA Synthetase Proteins in the Early History of Life

Gregory P. Fournier, Cheryl P. Andam, Eric J. Alm, J. Peter Gogarten

Journal:

Origins of Life and Evolution of Biospheres

Year:

2012

Language:

english

File:

PDF, 46 KB

english, 2012

57

The Evolution of Two-Component Systems in Bacteria Reveals Different Strategies for Niche Adaptation

Alm, Eric, Huang, Katherine, Arkin, Adam

Journal:

PLoS Computational Biology

Year:

2006

Language:

english

File:

PDF, 1.03 MB

english, 2006

58

Virtual microfluidics for digital quantification and single-cell sequencing

Xu, Liyi, Brito, Ilana L, Alm, Eric J, Blainey, Paul C

Journal:

Year:

2016

Language:

english

File:

PDF, 1.09 MB

english, 2016

59

Looking for Darwin's footprints in the microbial world

B. Jesse Shapiro, Lawrence A. David, Jonathan Friedman, Eric J. Alm

Journal:

Trends in Microbiology

Year:

2009

Language:

english

File:

PDF, 467 KB

english, 2009

60

Sa1615 GASTRIC DYSMOTILITY NEGATIVELY IMPACTS BOTH GASTROINTESTINAL AND LUNG MICROBIOMES

LÃ¶tstedt, Britta, Visner, Gary, Boyer, Debra, Freiberger, Dawn, Lurie, Margot, DiFilippo, Courtney, Kane, Madeline, Alm, Eric, Rosen, Rachel

Journal:

Gastroenterology

Year:

2020

File:

PDF, 241 KB

2020

61

NIH Public Access

Szabó, Gitta, Polz, Martin F, Alm, Eric J

Year:

2012

Language:

english

File:

PDF, 499 KB

english, 2012

62

Frozen Encapsulated Stool in Recurrent Clostridium difficile: Exploring the Role of Pills in the Treatment Hierarchy of Fecal Microbiota Transplant Nonresponders

Stollman, Neil, Smith, Mark, Giovanelli, Andrea, Mendolia, Gina, Burns, Laura, Didyk, Eliska, Burgess, James, Noh, Andrew, Edelstein, Carolyn, Alm, Eric, Kassam, Zain

Journal:

American Journal of Gastroenterology

Year:

2015

Language:

english

File:

PDF, 126 KB

english, 2015

63

The Oropharynx Rather than the Stomach is the Primary Driver of Lung Microbiome Changes in Aspirating Children

Duvallet, Claire, Snapper, Scott B., Iosim, Sonia, Lee, Ann, Alm, Eric, Rosen, Rachel

Journal:

Gastroenterology

Year:

2017

Language:

english

File:

PDF, 628 KB

english, 2017

64

Comprehensive analysis of chromosomal mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools

Jiang, Xiaofang, Hall, Andrew Brantley, Xavier, Ramnik J., Alm, Eric J., Alcaraz, Luis David

Journal:

Year:

2019

File:

PDF, 2.94 MB

2019

65

The Histidine Operon Is Ancient

Morgan N. Price, Eric J. Alm, Adam P. Arkin

Journal:

Journal of Molecular Evolution

Year:

2006

Language:

english

File:

PDF, 251 KB

english, 2006

66

Metapopulation structure of Vibrionaceae among coastal marine invertebrates

Sarah P. Preheim, Yan Boucher, Hans Wildschutte, Lawrence A. David, Daniele Veneziano, Eric J. Alm, Martin F. Polz

Journal:

Environmental Microbiology

Year:

2011

Language:

english

File:

PDF, 783 KB

english, 2011

67

Global Analysis of mRNA Localization Reveals a Prominent Role in Organizing Cellular Architecture and Function

Eric Lécuyer, Hideki Yoshida, Neela Parthasarathy, Christina Alm, Tomas Babak, Tanja Cerovina, Timothy R. Hughes, Pavel Tomancak, Henry M. Krause

Journal:

Year:

2007

Language:

english

File:

PDF, 2.19 MB

english, 2007

68

Transfer of noncoding DNA drives regulatory rewiring in bacteria

Oren, Yaara, Smith, Mark B., Johns, Nathan I., Kaplan Zeevi, Millie, Biran, Dvora, Ron, Eliora Z., Corander, Jukka, Wang, Harris H., Alm, Eric J., Pupko, Tal

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 1.22 MB

english, 2014

69

Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes

Hehemann, Jan-Hendrik, Arevalo, Philip, Datta, Manoshi S., Yu, Xiaoqian, Corzett, Christopher H., Henschel, Andreas, Preheim, Sarah P., Timberlake, Sonia, Alm, Eric J., Polz, Martin F.

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.40 MB

english, 2016

70

Erratum to: Host lifestyle affects human microbiota on daily timescales

David, Lawrence A., Materna, Arne C., Friedman, Jonathan, Baptista, Maria I. C., Blackburn, Matthew C., Perrotta, Allison, Erdman, Susan E., Alm, Eric J.

Journal:

Year:

2016

Language:

english

File:

PDF, 360 KB

english, 2016

71

Framework for rational donor selection in fecal microbiota transplant clinical trials

Duvallet, Claire, Zellmer, Caroline, Panchal, Pratik, Budree, Shrish, Osman, Majdi, Alm, Eric J., Carbonero, Franck

Journal:

Year:

2019

Language:

english

File:

PDF, 1.23 MB

english, 2019

72

Characterization of the unfolding pathway of the cell-cycle protein p13suc1 by molecular dynamics simulations: implications for domain swapping

Darwin OV Alonso, Eric Alm, Valerie Daggett

Journal:

Year:

2000

Language:

english

File:

PDF, 519 KB

english, 2000

73

Environmental vs. Genetic Influence on the Intestinal Microbiome of Monozygotic and Dizygotic Twins

Joshua R. Korzenik, Christopher Smillie, Vikas Pabby, Francisco M. Camas, Diana M. Chien, Michael Feldgarden, Dirk Gevers, Doyle V. Ward, Athos Bousvaros, Curtis Huttenh, Bruce Birren, Eric Alm

Journal:

Gastroenterology

Year:

2011

Language:

english

File:

PDF, 113 KB

english, 2011

74

Reply to HEP-17-1121

Bajaj, Jasmohan S., Kassam, Zain, Cox, I. Jane, Gurry, Thomas, Williams, Roger, Alm, Eric, John, Binu, Smith, Mark, Taylor-Robinson, Simon D., Gillevet, Patrick M

Journal:

Year:

2017

Language:

english

File:

PDF, 534 KB

english, 2017

75

Analysis of 1135 gut metagenomes identifies sex-specific resistome profiles

Sinha, Trishla, Vich Vila, Arnau, Garmaeva, Sanzhima, Jankipersadsing, Soesma A., Imhann, Floris, Collij, Valerie, Bonder, Marc Jan, Jiang, Xiaofang, Gurry, Thomas, Alm, Eric J., D’Amato, Mauro, Weers

Journal:

Year:

2018

Language:

english

File:

PDF, 2.76 MB

english, 2018

76

10.1038/77971

McCallister, Erika L., Alm, Eric, Baker, David

Journal:

Natural Structural Biology

Year:

2000

Language:

english

File:

PDF, 786 KB

english, 2000

77

Correction: The Life-Cycle of Operons

Price, Morgan N., Arkin, Adam P., Alm, Eric J.

Journal:

Year:

2006

File:

PDF, 24 KB

2006

78

Local Gene Regulation Details a Recognition Code within the LacI Transcriptional Factor Family

Camas, Francisco M., Alm, Eric J., Poyatos, Juan F., Stormo, Gary D.

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 1.12 MB

english, 2010

79

Inoculum composition determines microbial community and function in an anaerobic sequential batch reactor

Perrotta, Allison R., Kumaraswamy, Rajkumari, Bastidas-Oyanedel, Juan R., Alm, Eric J., Rodríguez, Jorge, Abdo, Zaid

Journal:

Year:

2017

Language:

english

File:

PDF, 4.22 MB

english, 2017

80

10.1038/14901

Baker, David, Riddle, David S., Grantcharova, Viara P., Santiago, Jed V., Alm, Eric, Ruczinski, Ingo

Journal:

Natural Structural Biology

Year:

1999

Language:

english

File:

PDF, 951 KB

english, 1999

81

Reproducibility of Vibrionaceae population structure in coastal bacterioplankton

Szabo, Gitta, Preheim, Sarah P, Kauffman, Kathryn M, David, Lawrence A, Shapiro, Jesse, Alm, Eric J, Polz, Martin F

Journal:

The ISME Journal

Year:

2013

Language:

english

File:

PDF, 1.96 MB

english, 2013

82

Shape and evolution of the fundamental niche in marine Vibrio

Materna, Arne C, Friedman, Jonathan, Bauer, Claudia, David, Christina, Chen, Sara, Huang, Ivy B, Gillens, April, Clarke, Sean A, Polz, Martin F, Alm, Eric J

Journal:

The ISME Journal

Year:

2012

Language:

english

File:

PDF, 707 KB

english, 2012

83

499 Donor Recruitment and Eligibility for Fecal Microbiota Transplantation: Results From an International Public Stool Bank

Burns, Laura J., Dubois, Nancy, Smith, Mark B., Mendolia, Gina M., Burgess, James, Edelstein, Carolyn, Noh, Andrew, Alm, Eric, Kassam, Zain

Journal:

Gastroenterology

Year:

2015

Language:

english

File:

PDF, 1.74 MB

english, 2015

84

Unlocking Short Read Sequencing for Metagenomics

Rodrigue, Sébastien, Materna, Arne C., Timberlake, Sonia C., Blackburn, Matthew C., Malmstrom, Rex R., Alm, Eric J., Chisholm, Sallie W., Gilbert, Jack Anthony

Journal:

Year:

2010

Language:

english

File:

PDF, 1.10 MB

english, 2010

85

Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers

Spencer, Sarah J, Tamminen, Manu V, Preheim, Sarah P, Guo, Mira T, Briggs, Adrian W, Brito, Ilana L, A Weitz, David, Pitkänen, Leena K, Vigneault, Francois, Virta, Marko PJuhani, Alm, Eric J

Journal:

The ISME Journal

Year:

2015

Language:

english

File:

PDF, 1.87 MB

english, 2015

86

Methodological approaches for fractionation and speciation to estimate trace element bioavailability in engineered anaerobic digestion ecosystems: an overview

van Hullebusch, Eric D., Guibaud, Gilles, Simon, Stéphane, Lenz, Markus, Shakeri Yekta, Sepehr, Fermoso, Fernando G., Jain, Rohan, Duester, Lars, Roussel, Jimmy, Guillon, Emmanuel, Skyllberg, Ulf, Alm

Journal:

Critical Reviews in Environmental Science and Technology

Year:

2016

Language:

english

File:

PDF, 1.03 MB

english, 2016

87

PREDICTIVE FACTORS FOR PROLIFERATIVE VITREORETINOPATHY FORMATION AFTER UNCOMPLICATED PRIMARY RETINAL DETACHMENT REPAIR

Xu, Kunyong, Chin, Eric K., Bennett, Steven R., Williams, David F., Ryan, Edwin H., Dev, Sundeep, Mittra, Robert A., Quiram, Polly A., Davies, John B., Parke, David Wilkin, Boldt, Herbert Culver, Alme

Journal:

Year:

2018

Language:

english

File:

PDF, 93 KB

english, 2018

88

Longitudinal wastewater sampling in buildings reveals temporal dynamics of metabolites

Evans, Ethan D., Dai, Chengzhen, Isazadeh, Siavash, Park, Shinkyu, Ratti, Carlo, Alm, Eric J., Patil, Kiran Raosaheb

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 8.55 MB

2020

89

Predicting human health from biofluid-based metabolomics using machine learning

Evans, Ethan D., Duvallet, Claire, Chu, Nathaniel D., Oberst, Michael K., Murphy, Michael A., Rockafellow, Isaac, Sontag, David, Alm, Eric J.

Journal:

Scientific Reports

Year:

2020

File:

PDF, 4.75 MB

2020

90

Identifying predictive features of Clostridium difficile infection recurrence before, during, and after primary antibiotic treatment

Pakpour, Sepideh, Bhanvadia, Amit, Zhu, Roger, Amarnani, Abhimanyu, Gibbons, Sean M., Gurry, Thomas, Alm, Eric J., Martello, Laura A.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.12 MB

english, 2017

91

Horizontal gene transfer and the evolution of bacterial and archaeal population structure

Polz, Martin F., Alm, Eric J., Hanage, William P.

Journal:

Trends in Genetics

Year:

2013

Language:

english

File:

PDF, 440 KB

english, 2013

92

Comparing Patterns of Natural Selection across Species Using Selective Signatures

Shapiro, B. Jesse, Alm, Eric J.

Journal:

Year:

2008

Language:

english

File:

PDF, 656 KB

english, 2008

93

“Every Gene Is Everywhere but the Environment Selects”: Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis

Fondi, Marco, Karkman, Antti, Tamminen, Manu V., Bosi, Emanuele, Virta, Marko, Fani, Renato, Alm, Eric, McInerney, James O.

Journal:

Genome Biology and Evolution

Year:

2016

Language:

english

File:

PDF, 1.20 MB

english, 2016

94

Fecal Microbiota Transplant Using a Precision Medicine Approach is Safe, Associated with Lower Hospitalization Risk and Improved Cognitive Function in Recurrent Hepatic Encephalopathy

Bajaj, Jasmohan S., Kassam, Zain, Fagan, Andrew, Gavis, Edith, Liu, Eric J., Kheradman, Raffi, Wang, Jessica, Cox, Jane, Taylor-Robinson, Simon D., Sikaroodi, Masoumeh, Alm, Eric, Gurry, Thomas, Smith

Journal:

Gastroenterology

Year:

2017

Language:

english

File:

PDF, 1.12 MB

english, 2017

95

A Novel Analysis Method for Paired-Sample Microbial Ecology Experiments

Olesen, Scott W., Vora, Suhani, Techtmann, Stephen M., Fortney, Julian L., Bastidas-Oyanedel, Juan R., Rodríguez, Jorge, Hazen, Terry C., Alm, Eric J., Humbert, Jean-François

Journal:

Year:

2016

Language:

english

File:

PDF, 545 KB

english, 2016

96

Microbial Emulsion Matrices: A Novel Method to Produce Stable, Orally Available Capsules for Fecal Microbiota Transplantation to Treat Clostridium difficile

Kassam, Zain, Mendolia, Gina, Vo, Elaine, Boughari, Samira, Njenga, Mary, Warren, Kurt, Burns, Laura, Burgess, James, Noh, Andrew, Blackler, Dan, Alm, Eric, Smith, Mark

Journal:

American Journal of Gastroenterology

Year:

2015

File:

PDF, 266 KB

2015

97

OpenBiome remains open to serve the medical community

Smith, Mark, Kassam, Zain, Edelstein, Carolyn, Burgess, James, Alm, Eric

Journal:

Nature Biotechnology

Year:

2014

Language:

english

File:

PDF, 202 KB

english, 2014

98

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

Duvallet, Claire, Gibbons, Sean M., Gurry, Thomas, Irizarry, Rafael A., Alm, Eric J.

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 747 KB

english, 2017

99

A Mobile Element in mutS Drives Hypermutation in a Marine Vibrio

Chu, Nathaniel D., Clarke, Sean A., Timberlake, Sonia, Polz, Martin F., Grossman, Alan D., Alm, Eric J., Moran, Mary Ann

Journal:

Year:

2017

Language:

english

File:

PDF, 1.78 MB

english, 2017

100

Designing fecal microbiota transplant trials that account for differences in donor stool efficacy

Olesen, Scott W, Gurry, Thomas, Alm, Eric J

Journal:

Statistical Methods in Medical Research

Year:

2017

Language:

english

File:

PDF, 221 KB

english, 2017

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