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51

Modularity detection in protein-protein interaction networks

Tejaswini Narayanan, Merril Gersten, Shankar Subramaniam, Ananth Grama

Journal:

BMC Research Notes

Year:

2011

Language:

english

File:

PDF, 302 KB

english, 2011

52

High-Performance Scientific Computing Volume 724 || Parallel Solution of Sparse Linear Systems

Berry, Michael W., Gallivan, Kyle A., Gallopoulos, Efstratios, Grama, Ananth, Philippe, Bernard, Saad, Yousef, Saied, Faisal

Year:

2012

Language:

english

File:

PDF, 644 KB

english, 2012

53

High-Performance Scientific Computing Volume 125 || Scaling Hypre’s Multigrid Solvers to 100,000 Cores

Berry, Michael W., Gallivan, Kyle A., Gallopoulos, Efstratios, Grama, Ananth, Philippe, Bernard, Saad, Yousef, Saied, Faisal

Year:

2012

Language:

english

File:

PDF, 939 KB

english, 2012

54

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || Throughput Considerations of Fault-Tolerant Routing in Network-on-Chip

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 294 KB

english, 2009

55

High-Performance Scientific Computing || A Jump-Start of Non-negative Least Squares Solvers

Berry, Michael W., Gallivan, Kyle A., Gallopoulos, Efstratios, Grama, Ananth, Philippe, Bernard, Saad, Yousef, Saied, Faisal

Year:

2012

Language:

english

File:

PDF, 282 KB

english, 2012

56

High-Performance Scientific Computing || Effect of Ordering for Iterative Solvers in Structural Mechanics Problems

Berry, Michael W., Gallivan, Kyle A., Gallopoulos, Efstratios, Grama, Ananth, Philippe, Bernard, Saad, Yousef, Saied, Faisal

Year:

2012

Language:

english

File:

PDF, 301 KB

english, 2012

57

Improving Error Bounds for Multipole-Based Treecodes

Grama, Ananth, Sarin, Vivek, Sameh, Ahmed

Journal:

SIAM Journal on Scientific Computing

Year:

2000

Language:

english

File:

PDF, 766 KB

english, 2000

58

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || Gibbs Motif Sampler, Weight Matrix and Artificial Neural Network for the Prediction of MHC Class-II Binding Peptides

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 317 KB

english, 2009

59

Parallel Hierarchical Solvers and Preconditioners for Boundary Element Methods

Grama, Ananth, Kumar, Vipin, Sameh, Ahmed

Journal:

SIAM Journal on Scientific Computing

Year:

1998

Language:

english

File:

PDF, 350 KB

english, 1998

60

Concurrent programming constructs for parallel MPI applications

Tobias Berka, Giorgos Kollias, Helge Hagenauer, Marian Vajteršic, Ananth Grama

Journal:

The Journal of Supercomputing

Year:

2013

Language:

english

File:

PDF, 786 KB

english, 2013

61

FFopt: An Automated Molecular Dynamics Force Field Parameter Optimization

Fogarty, Joseph C., van Duin, Adri C.T., Grama, Ananth Y., Pandit, Sagar A.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 63 KB

english, 2011

62

Lateral Organization in Lipid-Cholesterol Mixed Bilayers

Pandit, Sagar A., Khelashvili, George, Jakobsson, Eric, Grama, Ananth, Scott, H.L.

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 532 KB

english, 2007

63

Cholesterol Surrogates: A Comparison of Cholesterol and 16:0 Ceramide in POPC Bilayers

Pandit, Sagar A., Chiu, See-Wing, Jakobsson, Eric, Grama, Ananth, Scott, H.L.

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 158 KB

english, 2007

64

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || An Optimal, Distributed Deadlock Detection and Resolution Algorithm for Generalized Model in Distributed Systems

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 260 KB

english, 2009

65

A fast approach to global alignment of protein-protein interaction networks

Kollias, Giorgos, Sathe, Madan, Mohammadi, Shahin, Grama, Ananth

Journal:

BMC Research Notes

Year:

2013

Language:

english

File:

PDF, 1.35 MB

english, 2013

66

A reactive molecular dynamics simulation of the silica-water interface

Fogarty, Joseph C., Aktulga, Hasan Metin, Grama, Ananth Y., van Duin, Adri C. T., Pandit, Sagar A.

Journal:

The Journal of Chemical Physics

Year:

2010

Language:

english

File:

PDF, 1.14 MB

english, 2010

67

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || Vehicular Traffic Control: A Ubiquitous Computing Approach

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 368 KB

english, 2009

68

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || On the Connectivity, Lifetime and Hop Count of Routes Determined Using the City Section and Manhattan Mobility Models for Vehicular Ad Hoc Networks

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 318 KB

english, 2009

69

Functional Coherence of Molecular Networks in Bioinformatics || Introduction to Network Biology

Koyutürk, Mehmet, Subramaniam, Shankar, Grama, Ananth

Year:

2012

Language:

english

File:

PDF, 204 KB

english, 2012

70

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || Zone Based Hybrid Feature Extraction Algorithm for Handwritten Numeral Recognition of South Indian Scripts

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 222 KB

english, 2009

71

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || Multi-domain Protein Family Classification Using Isomorphic Inter-property Relationships

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 390 KB

english, 2009

72

[IEEE 2010 IEEE International Conference on Cluster Computing (CLUSTER) - Heraklion, Greece (2010.09.20-2010.09.24)] 2010 IEEE International Conference on Cluster Computing - Asynchronous Algorithms in MapReduce

Kambatla, Karthik, Rapolu, Naresh, Jagannathan, Suresh, Grama, Ananth

Year:

2010

Language:

english

File:

PDF, 247 KB

english, 2010

73

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || Multi-scale Modeling and Analysis of Nano-RFID Systems on HPC Setup

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 347 KB

english, 2009

74

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || Classification of Phylogenetic Profiles for Protein Function Prediction: An SVM Approach

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 273 KB

english, 2009

75

Cholesterol Packing around Lipids with Saturated and Unsaturated Chains: A Simulation Study

Pandit, Sagar A., Chiu, See-Wing, Jakobsson, Eric, Grama, Ananth, Scott, H. L.

Journal:

Year:

2008

Language:

english

File:

PDF, 255 KB

english, 2008

76

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || Predicting Maintainability of Component-Based Systems by Using Fuzzy Logic

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 218 KB

english, 2009

77

A universal quantum circuit scheme for finding complex eigenvalues

Daskin, Anmer, Grama, Ananth, Kais, Sabre

Journal:

Quantum Information Processing

Year:

2014

Language:

english

File:

PDF, 418 KB

english, 2014

78

Inferring the effective TOR-dependent network: a computational study in yeast

Mohammadi, Shahin, Subramaniam, Shankar, Grama, Ananth

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 1.28 MB

english, 2013

79

Using hierarchical data mining to characterize performance of wireless system configurations

Verstak, Alex, Ramakrishnan, Naren, Watson, Layne T., He, Jian, Shaffer, Clifford A., Grama, Ananth Y.

Journal:

Advances in Engineering Software (Thomson Reuters)

Year:

2013

Language:

english

File:

PDF, 1.89 MB

english, 2013

80

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || Significant Deregulated Pathways in Diabetes Type II Complications Identified through Expression Based Network Biology

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 234 KB

english, 2009

81

Parallel matrix algorithms

Bekas, Costas, Grama, Ananth, Saad, Yousef, Schenk, Olaf

Journal:

Parallel Computing

Year:

2014

Language:

english

File:

PDF, 85 KB

english, 2014

82

Surfing the Network for Ranking by Multidamping

Kollias, Giorgos, Gallopoulos, Efstratios, Grama, Ananth

Journal:

IEEE Transactions on Knowledge and Data Engineering

Year:

2014

Language:

english

File:

PDF, 1.36 MB

english, 2014

83

Detecting Conserved Interaction Patterns in Biological Networks

Koyutürk, Mehmet, Kim, Yohan, Subramaniam, Shankar, Szpankowski, Wojciech, Grama, Ananth

Journal:

Journal of Computational Biology

Year:

2006

Language:

english

File:

PDF, 567 KB

english, 2006

84

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || Secure Multi-party Computation Protocol for Defense Applications in Military Operations Using Virtual Cryptography

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 213 KB

english, 2009

85

[IEEE 2007 IEEE International Symposium on Information Theory - Nice (2007.06.24-2007.06.29)] 2007 IEEE International Symposium on Information Theory - Statistical Dependence in Biological Sequences

Aktulga, Hasan Metin, Kontoyiannis, Ioannis, Lyznik, L. Alex, Szpankowski, Lukasz, Grama, Ananth Y., Szpankowski, Wojciech

Year:

2007

Language:

english

File:

PDF, 4.64 MB

english, 2007

86

[IEEE 2013 IEEE 6th International Conference on Cloud Computing (CLOUD) - Santa Clara, CA (2013.06.28-2013.07.3)] 2013 IEEE Sixth International Conference on Cloud Computing - M-Lock: Accelerating Distributed Transactions on Key-Value Stores through Dynamic Lock Localization

Rapolu, Naresh, Chakradhar, Srimat, Hassan, Adnan, Grama, Ananth

Year:

2013

Language:

english

File:

PDF, 272 KB

english, 2013

87

Strain relaxation in Si/Ge/Si nanoscale bars from molecular dynamics simulations

Park, Yumi, Atkulga, Hasan Metin, Grama, Ananth, Strachan, Alejandro

Journal:

Journal of Applied Physics

Year:

2009

Language:

english

File:

PDF, 835 KB

english, 2009

88

[IEEE 29th International Conference on Software Engineering - Minneapolis, MN, USA (2007.05.20-2007.05.26)] 29th International Conference on Software Engineering (ICSE'07) - Path-Sensitive Inference of Function Precedence Protocols

Ramanathan, Murali Krishna, Grama, Ananth, Jagannathan, Suresh

Year:

2007

Language:

english

File:

PDF, 192 KB

english, 2007

89

Pairwise Alignment of Protein Interaction Networks

Koyutürk, Mehmet, Kim, Yohan, Topkara, Umut, Subramaniam, Shankar, Szpankowski, Wojciech, Grama, Ananth

Journal:

Journal of Computational Biology

Year:

2006

Language:

english

File:

PDF, 259 KB

english, 2006

90

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || IITKGP-SESC: Speech Database for Emotion Analysis

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 159 KB

english, 2009

91

[IEEE 21st IEEE/ACM International Conference on Automated Software Engineering (ASE'06) - Tokyo (2006.09.18-2006.09.22)] 21st IEEE/ACM International Conference on Automated Software Engineering (ASE'06) - Sieve: A Tool for Automatically Detecting Variations Across Program Versions

Ramanathan, Murali, Grama, Ananth, Jagannathan, Suresh

Year:

2006

Language:

english

File:

PDF, 200 KB

english, 2006

92

Multiple network alignment on quantum computers

Daskin, Anmer, Grama, Ananth, Kais, Sabre

Journal:

Quantum Information Processing

Year:

2014

Language:

english

File:

PDF, 254 KB

english, 2014

93

[IEEE 2010 9th International Symposium on Parallel and Distributed Computing (ISPDC) - Istanbul, Turkey (2010.07.7-2010.07.9)] 2010 Ninth International Symposium on Parallel and Distributed Computing - Performance Models for the Spike Banded Linear System Solver

Manguoglu, Murat, Saied, Faisal, Sameh, Ahmed, Grama, Ananth

Year:

2010

Language:

english

File:

PDF, 317 KB

english, 2010

94

Quantum random state generation with predefined entanglement constraint

Daskin, Anmer, Grama, Ananth, Kais, Sabre

Journal:

International Journal of Quantum Information

Year:

2014

Language:

english

File:

PDF, 743 KB

english, 2014

95

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || Secured Communication for Business Process Outsourcing Using Optimized Arithmetic Cryptography Protocol Based on Virtual Parties

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 208 KB

english, 2009

96

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || A Novel Genetic Algorithm Approach to Mobility Prediction in Wireless Networks

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 254 KB

english, 2009

97

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || CDIS: Circle Density Based Iris Segmentation

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 981 KB

english, 2009

98

[Communications in Computer and Information Science] Contemporary Computing Volume 40 || Energy-Constrained Scheduling of DAGs on Multi-core Processors

Ranka, Sanjay, Aluru, Srinivas, Buyya, Rajkumar, Chung, Yeh-Ching, Dua, Sumeet, Grama, Ananth, Gupta, Sandeep K. S., Kumar, Rajeev, Phoha, Vir V.

Year:

2009

Language:

english

File:

PDF, 381 KB

english, 2009

99

Assessing Significance of Connectivity and Conservation in Protein Interaction Networks

Koyutürk, Mehmet, Szpankowski, Wojciech, Grama, Ananth

Journal:

Journal of Computational Biology

Year:

2007

Language:

english

File:

PDF, 659 KB

english, 2007

100

Identifying Statistical Dependence in Genomic Sequences via Mutual Information Estimates

Aktulga, Hasan Metin, Kontoyiannis, Ioannis, Lyznik, L. Alex, Szpankowski, Lukasz, Grama, Ananth Y., Szpankowski, Wojciech

Journal:

EURASIP Journal on Bioinformatics and Systems Biology

Year:

2007

Language:

english

File:

PDF, 834 KB

english, 2007