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51

Preliminary crystallographic studies of urease from jack bean and from Klebsiella aerogenes

Evelyn Jabri, Mann H. Lee, Robert P. Hausinger, P.Andrew Karplus

Journal:

Journal of Molecular Biology

Year:

1992

Language:

english

File:

PDF, 840 KB

english, 1992

52

Structure of Intact AhpF Reveals a Mirrored Thioredoxin-like Active Site and Implies Large Domain Rotations during Catalysis †,‡

Wood, Zachary A., Poole, Leslie B., Karplus, P. Andrew

Journal:

Year:

2001

Language:

english

File:

PDF, 1.08 MB

english, 2001

53

Ordered water in macromolecular structure

Karplus, P.Andrew, Faerman, Carlos

Journal:

Current Opinion in Structural Biology

Year:

1994

Language:

english

File:

PDF, 775 KB

english, 1994

54

Mapping the Active Site Helix-to-Strand Conversion of CxxxxC Peroxiredoxin Q Enzymes

Perkins, Arden, Gretes, Michael C., Nelson, Kimberly J., Poole, Leslie B., Karplus, P. Andrew

Journal:

Year:

2012

Language:

english

File:

PDF, 2.40 MB

english, 2012

55

Dimers to Doughnuts: Redox-Sensitive Oligomerization of 2-Cysteine Peroxiredoxins †,‡

Wood, Zachary A., Poole, Leslie B., Hantgan, Roy R., Karplus, P. Andrew

Journal:

Year:

2002

Language:

english

File:

PDF, 759 KB

english, 2002

56

A Putative Fe 2+ -Bound Persulfenate Intermediate in Cysteine Dioxygenase †‡

Simmons, Chad R., Krishnamoorthy, Kalyanaraman, Granett, Spencer L., Schuller, David J., Dominy, John E., Begley, Tadhg P., Stipanuk, Martha H., Karplus, P. Andrew

Journal:

Year:

2008

Language:

english

File:

PDF, 1.16 MB

english, 2008

57

The anchored flexibility model in LC8 motif recognition: Insights from the Chica complex

Clark, Sarah A, Nyarko, Afua, Lőhr, Frank, Karplus, P. Andrew, Barbar, Elisar J

Journal:

Year:

2015

Language:

english

File:

PDF, 1.87 MB

english, 2015

58

Structure of Ptr ToxA: An RGD-Containing Host-Selective Toxin from Pyrenophora tritici-repentis

Ganapathy N. Sarma, Viola A. Manning, Lynda M. Ciuffetti and P. Andrew Karplus

Journal:

Year:

2005

Language:

english

File:

PDF, 2.99 MB

english, 2005

59

The hinge-bending mode in lysozyme

MCCAMMON, J. ANDREW, GELIN, BRUCE R., KARPLUS, MARTIN, WOLYNES, PETER G.

Journal:

Year:

1976

File:

PDF, 242 KB

1976

60

Low-resolution structure of recombinant human granulocyte-macrophage colony stimulating factor

Kay Diederichs, Steven Jacques, Tom Boone, P. Andrew Karplus

Journal:

Journal of Molecular Biology

Year:

1991

Language:

english

File:

PDF, 685 KB

english, 1991

61

Crystal Structure of a Novel Plasmodium falciparum 1-Cys Peroxiredoxin

Ganapathy N. Sarma, Christine Nickel, Stefan Rahlfs, Marina Fischer, Katja Becker, P. Andrew Karplus

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 985 KB

english, 2005

62

Biochemical and Crystallographic Characterization of Ferredoxin−NADP + Reductase from Nonphotosynthetic Tissues †,‡

Aliverti, Alessandro, Faber, Rick, Finnerty, Casey M., Ferioli, Cristian, Pandini, Vittorio, Negri, Armando, Karplus, P. Andrew, Zanetti, Giuliana

Journal:

Year:

2001

Language:

english

File:

PDF, 238 KB

english, 2001

63

Backbone chemical shift assignments forXanthomonas campestrisperoxiredoxin Q in the reduced and oxidized states: a dramatic change in backbone dynamics

Buchko, Garry W., Perkins, Arden, Parsonage, Derek, Poole, Leslie B., Karplus, P. Andrew

Journal:

Biomolecular NMR Assignments

Year:

2016

Language:

english

File:

PDF, 1.20 MB

english, 2016

64

Structure-based insights into the role of the Cys-Tyr crosslink and inhibitor-recognition by Mammalian Cysteine Dioxygenase

Driggers, Camden M., Kean, Kelsey M., Hirschberger, Lawrence L., Cooley, Richard B., Stipanuk, Martha H., Karplus, P. Andrew

Journal:

Journal of Molecular Biology

Year:

2016

Language:

english

File:

PDF, 4.72 MB

english, 2016

65

Differential Kinetics of Two-Cysteine Peroxiredoxin Disulfide Formation Reveal a Novel Model for Peroxide Sensing

Portillo-Ledesma, Stephanie, Randall, Lía M, Parsonage, Derek, Dalla Rizza, Joaquín, Karplus, P. Andrew, Poole, Leslie B., Denicola, Ana, Ferrer-Sueta, Gerardo

Journal:

Year:

2018

Language:

english

File:

PDF, 610 KB

english, 2018

66

Symerythrin Structures at Atomic Resolution and the Origins of Rubrerythrins and the Ferritin-Like Superfamily

Richard B. Cooley, Daniel J. Arp, P. Andrew Karplus

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.39 MB

english, 2011

67

Enhanced Chemical Synthesis at Soft Interfaces: A Universal Reaction-Adsorption Mechanism in Microcompartments

Fallah-Araghi, Ali, Meguellati, Kamel, Baret, Jean-Christophe, Harrak, Abdeslam El, Mangeat, Thomas, Karplus, Martin, Ladame, Sylvain, Marques, Carlos M., Griffiths, Andrew D.

Journal:

Physical Review Letters

Year:

2014

Language:

english

File:

PDF, 527 KB

english, 2014

68

ChSeq: A database of chameleon sequences

Li, Wenlin, Kinch, Lisa N., Karplus, P. Andrew, Grishin, Nick V.

Journal:

Protein Science

Year:

2015

Language:

english

File:

PDF, 1.92 MB

english, 2015

69

Residue-level global and local ensemble-ensemble comparisons of protein domains

Clark, Sarah A., Tronrud, Dale E., Andrew Karplus, P.

Journal:

Protein Science

Year:

2015

Language:

english

File:

PDF, 3.77 MB

english, 2015

70

Representing φ/ψ-dependency of a variable as a continuous function

Tronrud, Dale, Karplus, P. Andrew

Journal:

Acta Crystallographica Section A Foundations of Crystallography

Year:

2013

Language:

english

File:

PDF, 256 KB

english, 2013

71

Functionality maps of binding sites: A multiple copy simultaneous search method

Dr. Andrew Miranker, Martin Karplus

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1991

Language:

english

File:

PDF, 832 KB

english, 1991

72

Conformational studies of the robust 2-Cys peroxiredoxin Salmonella typhimurium AhpC by solution phase hydrogen/deuterium (H/D) exchange monitored by electrospray ionization mass spectrometry

Sasidhar Nirudodhi, Derek Parsonage, P. Andrew Karplus, Leslie B. Poole, Claudia S. Maier

Journal:

International Journal of Mass Spectrometry

Year:

2011

Language:

english

File:

PDF, 1.47 MB

english, 2011

73

Old yellow enzyme at 2 Å resolution: overall structure, ligand binding, and comparison with related flavoproteins

Kristin M Fox, P.Andrew Karplus

Journal:

Year:

1994

Language:

english

File:

PDF, 2.01 MB

english, 1994

74

Inhibition of human glutathione reductase by the nitrosourea drugs 1,3-bis(2-chloroethyl)-1-nitrosourea and 1-(2-chloroethyl)-3-(2-hydroxyethyl)-1-nitrosourea : A crystallographic analysis

P. Andrew KARPLUS, R. Luise KRAUTH-SIEGEL, R. Heiner SCHIRMER, Georg E. SCHULZ

Journal:

Year:

1988

Language:

english

File:

PDF, 592 KB

english, 1988

75

Analysis of the Calcium Transient at NEB during the First Cell Cycle in Dividing Sea Urchin Eggs

Carole L. Browne, Robbert Creton, Eric Karplus, Peter J. Mohler, Robert E. Palazzo and Andrew L. Miller

Journal:

Biological Bulletin

Year:

1996

Language:

english

File:

PDF, 1.42 MB

english, 1996

76

Cysteine p K a Values for the Bacterial Peroxiredoxin AhpC †‡

Nelson, Kimberly J., Parsonage, Derek, Hall, Andrea, Karplus, P. Andrew, Poole, Leslie B.

Journal:

Year:

2008

Language:

english

File:

PDF, 2.44 MB

english, 2008

77

Structural Insights into a Thermostable Variant of Human Carbonic Anhydrase II

Kean, Kelsey M., Porter, Joseph J., Mehl, Ryan A., Karplus, P. Andrew

Journal:

Protein Science

Year:

2017

Language:

english

File:

PDF, 878 KB

english, 2017

78

Refined crystal structure and mutagenesis of human granulocyte-macrophage colony-stimulating factor

Rozwarski, Denise A., Diederichs, Kay, Hecht, Randy, Boone, Tom, Karplus, P. Andrew

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1996

Language:

english

File:

PDF, 1.06 MB

english, 1996

79

The Interplay of Ligand Binding and Quaternary Structure in the Diverse Interactions of Dynein Light Chain LC8

Gregory Benison, P. Andrew Karplus, Elisar Barbar

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 3.44 MB

english, 2008

80

Crystal Structure of Escherichia coli SsuE: Defining a General Catalytic Cycle for FMN Reductases of the Flavodoxin-like Superfamily

Driggers, Camden M., Dayal, Paritosh V., Ellis, Holly R., Karplus, P. Andrew

Journal:

Year:

2014

Language:

english

File:

PDF, 6.71 MB

english, 2014

81

Song: Chymotrypsin (to the tune of “eight days a week,” by the beatles)

P. Andrew Karplus

Journal:

Biochemistry and Molecular Biology Education

Year:

2006

Language:

english

File:

PDF, 21 KB

english, 2006

82

Improved R-factors for diffraction data analysis in macromolecular crystallography

Diederichs, Kay, Karplus, P. Andrew

Journal:

Natural Structural Biology

Year:

1997

File:

PDF, 588 KB

1997

83

Refined Crystal Structure of Spinach Ferredoxin Reductase at 1.7 Å Resolution: Oxidized, Reduced and 2′-Phospho-5′-AMP Bound States

Christopher M. Bruns, Andrew P. Karplus

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 2.25 MB

english, 1995

84

Pressure dependence of aromatic ring rotations in proteins: a collisional interpretation

Martin Karplus, J.Andrew McCammon

Journal:

Year:

1981

Language:

english

File:

PDF, 191 KB

english, 1981

85

Structural, Thermodynamic, and Kinetic Effects of a Phosphomimetic Mutation in Dynein Light Chain LC8

Benison, Gregory, Chiodo, Marcus, Karplus, P. Andrew, Barbar, Elisar

Journal:

Year:

2009

Language:

english

File:

PDF, 4.61 MB

english, 2009

86

Song: Enzymes speed reactions (to the tune of “we will rock you,” by queen)

P. Andrew Karplus

Journal:

Biochemistry and Molecular Biology Education

Year:

2006

Language:

english

File:

PDF, 21 KB

english, 2006

87

Thiol dioxygenases: unique families of cupin proteins

Martha H. Stipanuk, Chad R. Simmons, P. Andrew Karplus, John E. Dominy

Journal:

Year:

2011

Language:

english

File:

PDF, 538 KB

english, 2011

88

Atomic Structures of the Human Immunophilin FKBP-12 Complexes with FK506 and Rapamycin

Gregory D. Van Duyne, Robert F. Standaert, P.Andrew Karplus, Stuart L. Schreiber, Jon Clardy

Journal:

Journal of Molecular Biology

Year:

1993

File:

PDF, 1.02 MB

1993

89

On the reliability of peptide nonplanarity seen in ultra-high resolution crystal structures

Brereton, Andrew E., Karplus, P. Andrew

Journal:

Protein Science

Year:

2016

Language:

english

File:

PDF, 581 KB

english, 2016

90

High resolution studies of hydride transfer in the ferredoxin:NADP + reductase superfamily

Kean, Kelsey M., Carpenter, Russell A., Pandini, Vittorio, Zanetti, Giuliana, Hall, Andrea R., Faber, Rick, Aliverti, Alessandro, Karplus, P. Andrew

Journal:

Year:

2017

Language:

english

File:

PDF, 1.54 MB

english, 2017

91

Correction to: NMR structure of the HIV-1 reverse transcriptase thumb subdomain

Sharaf, Naima G., Brereton, Andrew E., Byeon, In-Ja L., Karplus, P. Andrew, Gronenborn, Angela M.

Journal:

Journal of Biomolecular NMR

Year:

2017

Language:

english

File:

PDF, 500 KB

english, 2017

92

Song: Learn about the buffer (generic rap)

P. Andrew Karplus

Journal:

Biochemistry and Molecular Biology Education

Year:

2006

Language:

english

File:

PDF, 20 KB

english, 2006

93

Conformation Dependence of Backbone Geometry in Proteins

Donald S. Berkholz, Maxim V. Shapovalov, Roland L. Dunbrack Jr., P. Andrew Karplus

Journal:

Year:

2009

Language:

english

File:

PDF, 1.01 MB

english, 2009

94

Structural Changes Common to Catalysis in the Tpx Peroxiredoxin Subfamily

Andrea Hall, Banumathi Sankaran, Leslie B. Poole, P. Andrew Karplus

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 991 KB

english, 2009

95

Substrate binding and catalysis by glutathione reductase as derived from refined enzyme: Substrate crystal structures at 2Ã resolution

Karplus, P.Andrew, Schulz, Georg E.

Journal:

Journal of Molecular Biology

Year:

1989

Language:

english

File:

PDF, 1.75 MB

english, 1989

96

Structural Basis of Improved Second-Generation 3-Nitro-tyrosine tRNA Synthetases

Cooley, Richard B., Feldman, Jessica L., Driggers, Camden M., Bundy, Taylor A., Stokes, Audrey L., Karplus, P. Andrew, Mehl, Ryan A.

Journal:

Year:

2014

Language:

english

File:

PDF, 4.28 MB

english, 2014

97

Specific Residues in Peroxiredoxins Promote Peroxide Reactivity Through Effects on Cysteine pKa, Transition State Stabilization and Oligomerization

Nelson, Kimberly J, Parsonage, Derek, Van Swearingen, Amanda ED, Yuan, Ye, Salsbury, Freddie R, Hall, Andrea, Andrew Karplus, P, Poole, Leslie B

Journal:

Free Radical Biology and Medicine

Year:

2012

Language:

english

File:

PDF, 244 KB

english, 2012

98

Crystal Structure and Catalytic Properties of Bacillus anthracis CoADR-RHD: Implications for Flavin-Linked Sulfur Trafficking

Wallen, Jamie R., Mallett, T. Conn, Boles, William, Parsonage, Derek, Furdui, Cristina M., Karplus, P. Andrew, Claiborne, Al

Journal:

Year:

2009

Language:

english

File:

PDF, 8.79 MB

english, 2009

99

Chemical Rescue of Klebsiella aerogenes Urease Variants Lacking the Carbamylated-Lysine Nickel Ligand †,‡

Pearson, Matthew A., Schaller, Ruth A., Michel, Linda Overbye, Karplus, P. Andrew, Hausinger, Robert P.

Journal:

Year:

1998

Language:

english

File:

PDF, 154 KB

english, 1998

100

Conformation-dependent backbone geometry restraints set a new standard for protein crystallographic refinement

Moriarty, Nigel W., Tronrud, Dale E., Adams, Paul D., Karplus, P. Andrew

Journal:

Year:

2014

Language:

english

File:

PDF, 688 KB

english, 2014

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