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51

Transcriptomics reveals extensive inducible biotransformation in the soil-dwelling invertebrateFolsomia candidaexposed to phenanthrene

Benjamin Nota, Mirte Bosse, Bauke Ylstra, Nico M van Straalen, Dick Roelofs

Journal:

Year:

2009

Language:

english

File:

PDF, 434 KB

english, 2009

52

Anti-proliferative action of vitamin D in MCF7 is still active after siRNA-VDR knock-down

José L Costa, Paul P Eijk, Mark A van de Wiel, Derk ten Berge, Fernando Schmitt, Carmen J Narvaez, JoEllen Welsh, Bauke Ylstra

Journal:

Year:

2009

Language:

english

File:

PDF, 754 KB

english, 2009

53

HPV type-related chromosomal profiles in high-grade cervical intraepithelial neoplasia

Mariska Bierkens, Saskia M Wilting, Wessel N van Wieringen, Mark A van de Wiel, Bauke Ylstra, Chris JLM Meijer, Peter JF Snijders, Renske DM Steenbergen

Journal:

Year:

2012

Language:

english

File:

PDF, 631 KB

english, 2012

54

Breast tumor copy number aberration phenotypes and genomic instability

Jane Fridlyand, Antoine M Snijders, Bauke Ylstra, Hua Li, Adam Olshen, Richard Segraves, Shanaz Dairkee, Taku Tokuyasu, Britt Marie Ljung, Ajay N Jain, Jane McLennan, John Ziegler, Koei Chin, Sandy De

Journal:

Year:

2006

Language:

english

File:

PDF, 1.68 MB

english, 2006

55

High Lymph Node Yield is Related to Microsatellite Instability in Colon Cancer

E. J. Th. Belt, E. A. te Velde, O. Krijgsman, R. P. M. Brosens, M. Tijssen, H. F. van Essen, H. B. A. C. Stockmann, H. Bril, B. Carvalho, B. Ylstra, H. J. Bonjer, G. A. Meijer

Journal:

Annals of Surgical Oncology

Year:

2012

Language:

english

File:

PDF, 430 KB

english, 2012

56

Comprehensive genomic meta-analysis identifies intra-tumoural stroma as a predictor of survival in patients with gastric cancer

Wu, Y., Grabsch, H., Ivanova, T., Tan, I. B., Murray, J., Ooi, C. H., Wright, A. I., West, N. P., Hutchins, G. G. A., Wu, J., Lee, M., Lee, J., Koo, J. H., Yeoh, K. G., van Grieken, N., Ylstra, B., Rh

Journal:

Year:

2012

Language:

english

File:

PDF, 1.32 MB

english, 2012

57

Focal aberrations indicate EYA2 and hsa-miR-375 as oncogene and tumor suppressor in cervical carcinogenesis

Mariska Bierkens, Oscar Krijgsman, Saskia M. Wilting, Leontien Bosch, Annelieke Jaspers, Gerrit A. Meijer, Chris J. L. M. Meijer, Peter J. F. Snijders, Bauke Ylstra, Renske D. M. Steenbergen

Journal:

Genes, Chromosomes and Cancer

Year:

2012

Language:

english

File:

PDF, 706 KB

english, 2012

58

Low-grade and high-grade mammary carcinomas in WAP-T transgenic mice are independent entities distinguished by Met expression

Benjamin Otto, Katharina Gruner, Christina Heinlein, Florian Wegwitz, Peter Nollau, Bauke Ylstra, Klaus Pantel, Udo Schumacher, Lars O. Baumbusch, José Ignacio Martin-Subero, Reiner Siebert, Christoph

Journal:

International Journal of Cancer

Year:

2012

Language:

english

File:

PDF, 1.43 MB

english, 2012

59

High resolution microarray CGH and MLPA analysis for improved genotype/phenotype evaluation of two childhood genetic disorder cases: ring chromosome 19 and partial duplication 2q

Mario A.J.A. Hermsen, Marianne Tijssen, Ines Hernando Acero, Gerrit A. Meijer, Bauke Ylstra, Joaquín Fernández Toral

Journal:

European Journal of Medical Genetics

Year:

2005

Language:

english

File:

PDF, 252 KB

english, 2005

60

P52: Microarray-CGH analysis of the 8q22–q23, 13q21–q31 and 20q amplicons associated with colorectal cancer progression

Beatriz Carvalho, Cindy Postma, Sandra Mongera, Bauke Ylstra, Gerrit A. Meijer

Journal:

European Journal of Medical Genetics

Year:

2005

Language:

english

File:

PDF, 48 KB

english, 2005

61

I8: Oligo array CGH a fast, sensitive and high resolution platform

Journal:

European Journal of Medical Genetics

Year:

2005

Language:

english

File:

PDF, 48 KB

english, 2005

62

P70: Oligo-based array CGH; a highly sensitive, reproducible and affordable option

Paul van den IJssel, Marianne Tijssen, Suet-Feung Chin, Paul Eijk, Henne Holstege, Jos Jonkers, Carlos Caldas, Gerrit Meijer, Bauke Ylstra

Journal:

European Journal of Medical Genetics

Year:

2005

Language:

english

File:

PDF, 48 KB

english, 2005

63

Transcriptional responses of Folsomia candida upon exposure to Aspergillus nidulans secondary metabolites in single and mixed diets

T.K.S. Janssens, S. Staaden, S. Scheu, J. Mariën, B. Ylstra, D. Roelofs

Journal:

Year:

2010

Language:

english

File:

PDF, 512 KB

english, 2010

64

Resolving the resolution of array CGH

Bradley P. Coe, Bauke Ylstra, Beatriz Carvalho, Gerrit A. Meijer, Calum MacAulay, Wan L. Lam

Journal:

Year:

2007

Language:

english

File:

PDF, 370 KB

english, 2007

65

Genetics and pharmacogenomics of diffuse gliomas

van Thuijl, H.F., Ylstra, B., Würdinger, T., van Nieuwenhuizen, D., Heimans, J.J., Wesseling, P., Reijneveld, J.C.

Journal:

Pharmacology & Therapeutics

Year:

2013

Language:

english

File:

PDF, 3.17 MB

english, 2013

66

Expression profiling and prediction of distant metastases in head and neck squamous cell carcinoma

Braakhuis, B J M, Senft, A, de Bree, R, de Vries, J, Ylstra, B, Cloos, J, Kuik, D J, Leemans, C R, Brakenhoff, R H

Journal:

Journal of Clinical Pathology

Year:

2006

Language:

english

File:

PDF, 1.25 MB

english, 2006

67

484 In vivo induction of resistance to gemcitabine results in amplification of ribonucleotide reductase as the major determinant

A.M. Bergman, P. Eijk, V. Ruiz van Haperen, K. Smid, G. Veerman, P. Van den Ijssel, B. Ylstra, G. Peters

Journal:

European Journal of Cancer Supplements

Year:

2004

Language:

english

File:

PDF, 269 KB

english, 2004

68

Vitamin D and the mammary gland: a review on its role in normal development and breast cancer

Nair Lopes, Joana Paredes, José Luis Costa, Bauke Ylstra, Fernando Schmitt

Journal:

Breast Cancer Research

Year:

2012

Language:

english

File:

PDF, 306 KB

english, 2012

69

Relevance of PTEN loss in brain metastasis formation in breast cancer patients

Harriet Wikman, Katrin Lamszus, Niclas Detels, Liubov Uslar, Michaela Wrage, Christian Benner, Ina Hohensee, Bauke Ylstra, Kathrin Eylmann, Marc Zapatka, Guido Sauter, Dirk Kemming, Markus Glatzel, Vo

Journal:

Breast Cancer Research

Year:

2012

Language:

english

File:

PDF, 493 KB

english, 2012

70

Stimulated Gene Expression Profiles as a Blood Marker of Major Depressive Disorder

Sabine Spijker, Jeroen S. Van Zanten, Simone De Jong, Brenda W.J.H. Penninx, Richard van Dyck, Frans G. Zitman, Jan H. Smit, Bauke Ylstra, August B. Smit, Witte J.G. Hoogendijk

Journal:

Biological Psychiatry

Year:

2010

Language:

english

File:

PDF, 752 KB

english, 2010

71

Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses

Wessel N van Wieringen, Kristian Unger, Gwenaël GR Leday, Oscar Krijgsman, Renée X de Menezes, Bauke Ylstra, Mark A van de Wiel

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 337 KB

english, 2012

72

Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures

Naughton, Catherine, Avlonitis, Nicolaos, Corless, Samuel, Prendergast, James G, Mati, Ioulia K, Eijk, Paul P, Cockroft, Scott L, Bradley, Mark, Ylstra, Bauke, Gilbert, Nick

Journal:

Nature Structural and Molecular Biology

Year:

2013

Language:

english

File:

PDF, 3.52 MB

english, 2013

73

Integrated Genomics Identifies Five Medulloblastoma Subtypes with Distinct Genetic Profiles, Pathway Signatures and Clinicopathological Features

Kool, Marcel, Koster, Jan, Bunt, Jens, Hasselt, Nancy E., Lakeman, Arjan, van Sluis, Peter, Troost, Dirk, Meeteren, Netteke Schouten-van, Caron, Huib N., Cloos, Jacqueline, Mršić, Alan, Ylstra, Bauke,

Journal:

Year:

2008

Language:

english

File:

PDF, 1.58 MB

english, 2008

74

Expression signature in peripheral blood cells for molecular diagnosis of head and neck squamous cell carcinoma

Braakhuis, BJM, Graveland, AP, Dijk, F, Ylstra, B, van Wieringen, WN, Leemans, CR, Brakenhoff, RH

Journal:

Year:

2013

Language:

english

File:

PDF, 234 KB

english, 2013

75

Gene Expression Analysis of Collembola in Cadmium Containing Soil

Nota, Benjamin, Timmermans, Martijn J.T.N., Franken, Oscar, Montagne-Wajer, Kora, Mariën, Janine, Boer, Muriel E. de, Boer, Tjalf E. de, Ylstra, Bauke, Straalen, Nico M. van, Roelofs, Dick

Journal:

Environmental Science & Technology

Year:

2008

Language:

english

File:

PDF, 140 KB

english, 2008

76

High-level copy number gains of established and potential drug target genes in gastric cancer as a lead for treatment development and selection

Labots, Mariette, Buffart, Tineke E., Haan, Josien C., Grieken, Nicole C. T., Tijssen, Marianne, Velde, Cornelis J. H., Grabsch, Heike I., Ylstra, Bauke, Carvalho, Beatriz, Fijneman, Remond J. A., Ver

Journal:

Cellular Oncology

Year:

2014

Language:

english

File:

PDF, 557 KB

english, 2014

77

Clinical value of chromosome arms 19q and 11p losses in low-grade gliomas

Alentorn, A., van Thuijl, H. F., Marie, Y., Alshehhi, H., Carpentier, C., Boisselier, B., Laigle-Donadey, F., Mokhtari, K., Scheinin, I., Wesseling, P., Ylstra, B., Capelle, L., Hoang-Xuan, K., Sanson

Journal:

Year:

2014

Language:

english

File:

PDF, 406 KB

english, 2014

78

Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis

Holstege, H., Pfeiffer, W., Sie, D., Hulsman, M., Nicholas, T. J., Lee, C. C., Ross, T., Lin, J., Miller, M. A., Ylstra, B., Meijers-Heijboer, H., Brugman, M. H., Staal, F. J. T., Holstege, G., Reinde

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 1.49 MB

english, 2014

79

No evidence for active human papillomavirus (HPV) in fields surrounding HPV-positive oropharyngeal tumors

Rietbergen, Michelle M., Braakhuis, Boudewijn J. M., Moukhtari, Nadia, Bloemena, Elisabeth, Brink, Arjen, Sie, Daoud, Ylstra, Bauke, Baatenburg de Jong, Robert J., Snijders, Peter J. F., Brakenhoff, R

Journal:

Journal of Oral Pathology & Medicine

Year:

2014

Language:

english

File:

PDF, 111 KB

english, 2014

80

Identification of Lethal microRNAs Specific for Head and Neck Cancer

Lindenbergh-van der Plas, M., Martens-de Kemp, S. R., de Maaker, M., van Wieringen, W. N., Ylstra, B., Agami, R., Cerisoli, F., Leemans, C. R., Braakhuis, B. J. M., Brakenhoff, R. H.

Journal:

Clinical Cancer Research

Year:

2013

Language:

english

File:

PDF, 447 KB

english, 2013

81

Focal chromosomal copy number aberrations in cancer—Needles in a genome haystack

Krijgsman, Oscar, Carvalho, Beatriz, Meijer, Gerrit A., Steenbergen, Renske D.M., Ylstra, Bauke

Journal:

Biochimica et Biophysica Acta (BBA) - Molecular Cell Research

Year:

2014

Language:

english

File:

PDF, 1.40 MB

english, 2014

82

Mismatch Repair Status and BRAF Mutation Status in Metastatic Colorectal Cancer Patients: A Pooled Analysis of the CAIRO, CAIRO2, COIN, and FOCUS Studies

Venderbosch, S., Nagtegaal, I. D., Maughan, T. S., Smith, C. G., Cheadle, J. P., Fisher, D., Kaplan, R., Quirke, P., Seymour, M. T., Richman, S. D., Meijer, G. A., Ylstra, B., Heideman, D. A. M., de H

Journal:

Clinical Cancer Research

Year:

2014

Language:

english

File:

PDF, 284 KB

english, 2014

83

Genetic Variation in Parthenogenetic Collembolans Is Associated with Differences in Fitness and Cadmium-Induced Transcriptome Responses

Nota, Benjamin, de Korte, Maarten, Ylstra, Bauke, van Straalen, Nico M., Roelofs, Dick

Journal:

Environmental Science & Technology

Year:

2013

Language:

english

File:

PDF, 2.33 MB

english, 2013

84

An exploration of pathways involved in lung carcinoid progression using gene expression profiling

Swarts, D. R. A., Van Neste, L., Henfling, M. E. R., Eijkenboom, I., Eijk, P. P., van Velthuysen, M.-L., Vink, A., Volante, M., Ylstra, B., Van Criekinge, W., van Engeland, M., Ramaekers, F. C. S., Sp

Journal:

Year:

2013

Language:

english

File:

PDF, 1.74 MB

english, 2013

85

Fourier-transform pulsed-field-gradient 1H nuclear magnetic resonance investigation of the diffusion of light n-alkanes in zeolite ZSM-5

Datema, Klaas P., den Ouden, Constantinus J. J., Ylstra, Wessel D., Kuipers, Herman P. C. E., Post, Martin F. M., K�rger, J�rg

Journal:

Journal of the Chemical Society Faraday Transactions

Year:

1991

Language:

english

File:

PDF, 1.22 MB

english, 1991

86

Integrative analysis of array-comparative genomic hybridisation and matched gene expression profiling data reveals novel genes with prognostic significance in oesophageal adenocarcinoma

Goh, X. Y., Rees, J. R. E., Paterson, A. L., Chin, S. F., Marioni, J. C., Save, V., O'Donovan, M., Eijk, P. P., Alderson, D., Ylstra, B., Caldas, C., Fitzgerald, R. C.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.01 MB

english, 2011

87

Multiple putative oncogenes at the chromosome 20q amplicon contribute to colorectal adenoma to carcinoma progression

Carvalho, B, Postma, C, Mongera, S, Hopmans, E, Diskin, S, van de Wiel, M A, van Criekinge, W, Thas, O, Matthai, A, Cuesta, M A, Terhaar sive Droste, J S, Craanen, M, Schrock, E, Ylstra, B, Meijer, G

Journal:

Year:

2009

Language:

english

File:

PDF, 2.02 MB

english, 2009

88

M-CSF Priming of Osteoclast Precursors Can Cause Osteoclastogenesis-Insensitivity, Which Can be Prevented and Overcome on Bone

de Vries, Teun J., Schoenmaker, Ton, Aerts, David, Grevers, Lilyanne C., Souza, Pedro P.C., Nazmi, Kamran, van de Wiel, Mark A., Ylstra, Bauke, van Lent, Peter L., Leenen, Pieter J.M., Everts, Vincent

Journal:

Journal of Cellular Physiology

Year:

2015

Language:

english

File:

PDF, 594 KB

english, 2015

89

Gene-dosage dependent overexpression at the 13q amplicon identifies DIS3 as candidate oncogene in colorectal cancer progression

de Groen, Florence L.M., Krijgsman, Oscar, Tijssen, Marianne, Vriend, Lianne E.M., Ylstra, Bauke, Hooijberg, Erik, Meijer, Gerrit A., Steenbergen, Renske D.M., Carvalho, Beatriz

Journal:

Genes, Chromosomes and Cancer

Year:

2014

Language:

english

File:

PDF, 441 KB

english, 2014

90

BAC to the future! or oligonucleotides: a perspective for micro array comparative genomic hybridization (array CGH)

Journal:

Nucleic Acids Research

Year:

2006

Language:

english

File:

PDF, 93 KB

english, 2006

91

Micro-Array Analysis of Resistance for Gemcitabine Results in Increased Expression of Ribonucleotide Reductase Subunits

Smid, K., Bergman, A. M., Eijk, P. P., Veerman, G., Ruiz van Haperen, V. W. T., van den Ijssel, P., Ylstra, B., Peters, G. J.

Journal:

Nucleosides Nucleotides & Nucleic Acids

Year:

2006

Language:

english

File:

PDF, 358 KB

english, 2006

92

Signatures of tumour immunity distinguish Asian and non-Asian gastric adenocarcinomas

Lin, S. J., Gagnon-Bartsch, J. A., Tan, I. B., Earle, S., Ruff, L., Pettinger, K., Ylstra, B., van Grieken, N., Rha, S. Y., Chung, H. C., Lee, J.-S., Cheong, J. H., Noh, S. H., Aoyama, T., Miyagi, Y.,

Journal:

Year:

2014

Language:

english

File:

PDF, 2.92 MB

english, 2014

93

Chromosomal Aberrations in Mucoepidermoid Carcinoma of The Salivary Gland

Bloemena, Elisabeth, Matse, Johannes H., Veerman, Enno C.I., Bolscher, Jan G., Leemans, C. René, Ylstra, Bauke

Journal:

Oral Surgery Oral Medicine Oral Pathology and Oral Radiology

Year:

2015

Language:

english

File:

PDF, 51 KB

english, 2015

94

Chromosome 20p11 gains are associated with liver-specific metastasis in patients with colorectal cancer

Mekenkamp, L. J. M., Haan, J. C., Koopman, M., Vink-Borger, M. E., Israeli, D., Teerenstra, S., Ylstra, B., Meijer, G. A., Punt, C. J. A., Nagtegaal, I. D.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.12 MB

english, 2013

95

Nontemplated Nucleotide Additions Distinguish the Small RNA Composition in Cells from Exosomes

Koppers-Lalic, Danijela, Hackenberg, Michael, Bijnsdorp, Irene V., van Eijndhoven, Monique A.J., Sadek, Payman, Sie, Daud, Zini, Nicoletta, Middeldorp, Jaap M., Ylstra, Bauke, de Menezes, Renee X., Wü

Journal:

Year:

2014

Language:

english

File:

PDF, 2.35 MB

english, 2014

96

To DNA or not to DNA? That Is the Question, When It Comes to Molecular Subtyping for the Clinic!

Smeets, S. J., Harjes, U., van Wieringen, W. N., Sie, D., Brakenhoff, R. H., Meijer, G. A., Ylstra, B.

Journal:

Clinical Cancer Research

Year:

2011

Language:

english

File:

PDF, 963 KB

english, 2011

97

Flavonols Stimulate Development, Germination, and Tube Growth of Tobacco Pollen

Ylstra, B., Touraev, A., Moreno, R. M. B., Stoger, E., van Tunen, A. J., Vicente, O., Mol, J. N. M., Heberle-Bors, E.

Journal:

PLANT PHYSIOLOGY

Year:

1992

Language:

english

File:

PDF, 1.60 MB

english, 1992

98

Genomic Profiles Associated with Early Micrometastasis in Lung Cancer: Relevance of 4q Deletion

Wrage, M., Ruosaari, S., Eijk, P. P., Kaifi, J. T., Hollmen, J., Yekebas, E. F., Izbicki, J. R., Brakenhoff, R. H., Streichert, T., Riethdorf, S., Glatzel, M., Ylstra, B., Pantel, K., Wikman, H.

Journal:

Clinical Cancer Research

Year:

2009

Language:

english

File:

PDF, 426 KB

english, 2009

99

Inhibition of Gastric Cancer Invasion and Metastasis by PLA2G2A, a Novel -Catenin/TCF Target Gene

Ganesan, K., Ivanova, T., Wu, Y., Rajasegaran, V., Wu, J., Lee, M. H., Yu, K., Rha, S. Y., Chung, H. C., Ylstra, B., Meijer, G., Lian, K. O., Grabsch, H., Tan, P.

Journal:

Cancer Research

Year:

2008

Language:

english

File:

PDF, 755 KB

english, 2008

100

Comment re: A Comparison of DNA Copy Number Profiling Platforms

Coe, B. P., MacAulay, C., Lam, W. L., Ylstra, B., Carvalho, B., Meijer, G. A.

Journal:

Cancer Research

Year:

2008

Language:

english

File:

PDF, 42 KB

english, 2008