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1

Soft bounds on diffusion produce skewed distributions and Gompertz growth

Mandrà, Salvatore, Lagomarsino, Marco Cosentino, Gherardi, Marco

Journal:

Physical Review E

Year:

2014

Language:

english

File:

PDF, 509 KB

english, 2014

2

Step by Step, Cell by Cell: Quantification of the Bacterial Cell Cycle

Osella, Matteo, Tans, Sander J., Cosentino Lagomarsino, Marco

Journal:

Trends in Microbiology

Year:

2017

Language:

english

File:

PDF, 1020 KB

english, 2017

3

Quantitative Viral Ecology: Dynamics of Viruses and Their Microbial Hosts Quantitative Viral Ecology: Dynamics of Viruses and Their Microbial Hosts , Joshua S. Weitz, Princeton U. Press, 2016, 360 p, $69.95, ISBN 978-0-691-16154-9

Lagomarsino, Marco Cosentino

Journal:

Year:

2017

Language:

english

File:

PDF, 301 KB

english, 2017

4

A Decrease in Transcription Capacity Limits Growth Rate upon Translation Inhibition

Zhang, Qing, Brambilla, Elisa, Li, Rui, Shi, Hualin, Cosentino Lagomarsino, Marco, Sclavi, Bianca, Bulman, Zackery

Journal:

Year:

2020

File:

PDF, 698 KB

2020

5

Ordered structure of the transcription network inherited from the yeast whole-genome duplication

Diana Fusco, Luigi Grassi, Bruno Bassetti, Michele Caselle, Marco Cosentino Lagomarsino

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 866 KB

english, 2010

6

Horizontal gene transfers as metagenomic gene duplications

Grassi, Luigi, Caselle, Michele, Lercher, Martin J., Lagomarsino, Marco Cosentino

Journal:

Molecular BioSystems

Year:

2012

Language:

english

File:

PDF, 1.55 MB

english, 2012

7

DnaA and the timing of chromosome replication inEs-cherichia colias a function of growth rate

Matthew AA Grant, Chiara Saggioro, Ulisse Ferrari, Bruno Bassetti, Bianca Sclavi, Marco Cosentino Lagomarsino

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 504 KB

english, 2011

8

A basic swimmer at low Reynolds number

Leoni, Marco, Kotar, Jurij, Bassetti, Bruno, Cicuta, Pietro, Lagomarsino, Marco Cosentino

Journal:

Year:

2009

Language:

english

File:

PDF, 574 KB

english, 2009

9

Driving Potential and Noise Level Determine the Synchronization State of Hydrodynamically Coupled Oscillators

Bruot, Nicolas, Kotar, Jurij, de Lillo, Filippo, Cosentino Lagomarsino, Marco, Cicuta, Pietro

Journal:

Physical Review Letters

Year:

2012

Language:

english

File:

PDF, 408 KB

english, 2012

10

Gene silencing and large-scale domain structure of the E. coli genome

Zarei, Mina, Sclavi, Bianca, Cosentino Lagomarsino, Marco

Journal:

Molecular BioSystems

Year:

2013

Language:

english

File:

PDF, 2.18 MB

english, 2013

11

Growth-rate-dependent dynamics of a bacterial genetic oscillator

Osella, Matteo, Lagomarsino, Marco Cosentino

Journal:

Physical Review E

Year:

2013

Language:

english

File:

PDF, 646 KB

english, 2013

12

Microtubule Organization in Three-Dimensional Confined Geometries: Evaluating the Role of Elasticity Through a Combined In Vitro and Modeling Approach

Lagomarsino, Marco Cosentino, Tanase, Catalin, Vos, Jan W., Emons, Anne Mie C., Mulder, Bela M., Dogterom, Marileen

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 1.20 MB

english, 2007

13

Separation of time scales in one-dimensional directed nucleation-growth processes

Pierobon, Paolo, Miné-Hattab, Judith, Cappello, Giovanni, Viovy, Jean-Louis, Lagomarsino, Marco Cosentino

Journal:

Physical Review E

Year:

2010

Language:

english

File:

PDF, 228 KB

english, 2010

14

Microfluidic chemostat for measuring single cell dynamics in bacteria

Long, Zhicheng, Nugent, Eileen, Javer, Avelino, Cicuta, Pietro, Sclavi, Bianca, Cosentino Lagomarsino, Marco, Dorfman, Kevin D.

Journal:

Year:

2013

Language:

english

File:

PDF, 908 KB

english, 2013

15

Isotropic–nematic transition of long, thin, hard spherocylinders confined in a quasi-two-dimensional planar geometry

Cosentino Lagomarsino, Marco, Dogterom, Marileen, Dijkstra, Marjolein

Journal:

The Journal of Chemical Physics

Year:

2003

Language:

english

File:

PDF, 1.02 MB

english, 2003

16

Physical descriptions of the bacterial nucleoid at large scales, and their biological implications

Benza, Vincenzo G, Bassetti, Bruno, Dorfman, Kevin D, Scolari, Vittore F, Bromek, Krystyna, Cicuta, Pietro, Lagomarsino, Marco Cosentino

Journal:

Reports on Progress in Physics

Year:

2012

Language:

english

File:

PDF, 1.75 MB

english, 2012

17

Universal features in the genome-level evolution of protein domains

Marco Cosentino Lagomarsino, Alessandro L Sellerio, Philip D Heijning…

Journal:

Year:

2009

Language:

english

File:

PDF, 1.15 MB

english, 2009

18

Patterns of synchronization in the hydrodynamic coupling of active colloids

Cicuta, Giovanni M., Onofri, Enrico, Lagomarsino, Marco Cosentino, Cicuta, Pietro

Journal:

Physical Review E

Year:

2012

Language:

english

File:

PDF, 672 KB

english, 2012

19

Persistent super-diffusive motion of Escherichia coli chromosomal loci

Javer, Avelino, Kuwada, Nathan J., Long, Zhicheng, Benza, Vincenzo G., Dorfman, Kevin D., Wiggins, Paul A., Cicuta, Pietro, Lagomarsino, Marco Cosentino

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 473 KB

english, 2014

20

Functional models for large-scale gene regulation networks: realism and fiction

Lagomarsino, Marco Cosentino, Bassetti, Bruno, Castellani, Gastone, Remondini, Daniel

Journal:

Molecular BioSystems

Year:

2009

Language:

english

File:

PDF, 611 KB

english, 2009

21

Identity and divergence of protein domain architectures after the yeast whole-genome duplication event

Grassi, Luigi, Fusco , Diana, Sellerio , Alessandro, Corà, Davide, Bassetti, Bruno, Caselle, Michele, Lagomarsino, Marco Cosentino

Journal:

Molecular BioSystems

Year:

2010

Language:

english

File:

PDF, 1.68 MB

english, 2010

22

Measuring bacterial adaptation dynamics at the single-cell level using a microfluidic chemostat and time-lapse fluorescence microscopy

Long, Zhicheng, Olliver, Anne, Brambilla, Elisa, Sclavi, Bianca, Lagomarsino, Marco Cosentino, Dorfman, Kevin D.

Journal:

The Analyst (Royal Society of Chemistry)

Year:

2014

Language:

english

File:

PDF, 899 KB

english, 2014

23

Hydrodynamically synchronized states in active colloidal arrays

Damet, Loïc, Cicuta, Giovanni M., Kotar, Jurij, Lagomarsino, Marco Cosentino, Cicuta, Pietro

Journal:

Year:

2012

Language:

english

File:

PDF, 743 KB

english, 2012

24

Speed of evolution in large asexual populations with diminishing returns

Fumagalli, Maria R., Osella, Matteo, Thomen, Philippe, Heslot, Francois, Cosentino Lagomarsino, Marco

Journal:

Journal of Theoretical Biology

Year:

2015

Language:

english

File:

PDF, 833 KB

english, 2015

25

Statistical mechanics of the “Chinese restaurant process”: Lack of self-averaging, anomalous finite-size effects, and condensation

Bassetti, Bruno, Zarei, Mina, Cosentino Lagomarsino, Marco, Bianconi, Ginestra

Journal:

Physical Review E

Year:

2009

Language:

english

File:

PDF, 106 KB

english, 2009

26

Continuum Description of the Cytoskeleton: Ring Formation in the Cell Cortex

Zumdieck, Alexander, Lagomarsino, Marco Cosentino, Tanase, Catalin, Kruse, Karsten, Mulder, Bela, Dogterom, Marileen, Jülicher, Frank

Journal:

Physical Review Letters

Year:

2005

Language:

english

File:

PDF, 337 KB

english, 2005

27

Influence of homology and node age on the growth of protein-protein interaction networks

Bottinelli, Arianna, Bassetti, Bruno, Lagomarsino, Marco Cosentino, Gherardi, Marco

Journal:

Physical Review E

Year:

2012

Language:

english

File:

PDF, 739 KB

english, 2012

28

Noise and Synchronization of a Single Active Colloid

Bruot, Nicolas, Damet, Loïc, Kotar, Jurij, Cicuta, Pietro, Lagomarsino, Marco Cosentino

Journal:

Physical Review Letters

Year:

2011

Language:

english

File:

PDF, 338 KB

english, 2011

29

Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid

Scolari, Vittore F., Cosentino Lagomarsino, Marco

Journal:

Year:

2015

Language:

english

File:

PDF, 1.69 MB

english, 2015

30

Hydrodynamic synchronization of colloidal oscillators

Kotar, Jurij, Leoni, Marco, Bassetti, Bruno, Lagomarsino, Marco Cosentino, Cicuta, Pietro

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.27 MB

english, 2010

31

Large-scale dynamics of horizontal transfers

Grassi, Luigi, Grilli, Jacopo, Lagomarsino, Marco Cosentino

Journal:

Mobile Genetic Elements

Year:

2012

Language:

english

File:

PDF, 2.31 MB

english, 2012

32

Dicke Simulators with Emergent Collective Quantum Computational Abilities

Rotondo, Pietro, Cosentino Lagomarsino, Marco, Viola, Giovanni

Journal:

Physical Review Letters

Year:

2015

Language:

english

File:

PDF, 3.68 MB

english, 2015

33

From structure to function of bacterial chromosomes: Evolutionary perspectives and ideas for new experiments

Lagomarsino, Marco Cosentino, Espéli, Olivier, Junier, Ivan

Journal:

Year:

2015

Language:

english

File:

PDF, 9.67 MB

english, 2015

34

Concerted control of Escherichia coli cell division

Osella, Matteo, Nugent, Eileen, Cosentino Lagomarsino, Marco

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 5.21 MB

english, 2014

35

Short-time movement of E. coli chromosomal loci depends on coordinate and subcellular localization

Javer, Avelino, Long, Zhicheng, Nugent, Eileen, Grisi, Marco, Siriwatwetchakul, Kamin, Dorfman, Kevin D., Cicuta, Pietro, Cosentino Lagomarsino, Marco

Journal:

Nature Communications

Year:

2013

Language:

english

File:

PDF, 599 KB

english, 2013

36

Hydrodynamic synchronization of colloidal oscillators

Jurij Kotar, Marco Leoni, Bruno Bassetti, Marco Cosentino Lagomarsino, Pietro Cicuta and Harry L. Swinney

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.37 MB

english, 2010

37

Individuality and universality in the growth-division laws of single E. coli cells

Kennard, Andrew S., Osella, Matteo, Javer, Avelino, Grilli, Jacopo, Nghe, Philippe, Tans, Sander J., Cicuta, Pietro, Cosentino Lagomarsino, Marco

Journal:

Physical Review E

Year:

2016

Language:

english

File:

PDF, 1.43 MB

english, 2016

38

Law of corresponding states for open collaborations

Gherardi, Marco, Bassetti, Federico, Cosentino Lagomarsino, Marco

Journal:

Physical Review E

Year:

2016

Language:

english

File:

PDF, 1.32 MB

english, 2016

39

Regulation of chain length in two diatoms as a growth-fragmentation process

Gherardi, Marco, Amato, Alberto, Bouly, Jean-Pierre, Cheminant, Soizic, Ferrante, Maria Immacolata, d'Alcalá, Maurizio Ribera, Iudicone, Daniele, Falciatore, Angela, Cosentino Lagomarsino, Marco

Journal:

Physical Review E

Year:

2016

Language:

english

File:

PDF, 1.03 MB

english, 2016

40

Contrasting evolutionary genome dynamics between domesticated and wild yeasts

Yue, Jia-Xing, Li, Jing, Aigrain, Louise, Hallin, Johan, Persson, Karl, Oliver, Karen, Bergström, Anders, Coupland, Paul, Warringer, Jonas, Lagomarsino, Marco Cosentino, Fischer, Gilles, Durbin, Richa

Journal:

Nature Genetics

Year:

2017

Language:

english

File:

PDF, 2.18 MB

english, 2017

41

Stochasticity and homeostasis in the E. coli replication and division cycle

Adiciptaningrum, Aileen, Osella, Matteo, Moolman, M. Charl, Cosentino Lagomarsino, Marco, Tans, Sander J.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.00 MB

english, 2016

42

Nutrient consumption and chain tuning in diatoms exposed to storm-like turbulence

Dell’Aquila, Gianluca, Ferrante, Maria I., Gherardi, Marco, Cosentino Lagomarsino, Marco, Ribera d’Alcalà, Maurizio, Iudicone, Daniele, Amato, Alberto

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 3.32 MB

english, 2017

43

Role of growth rate on the orientational alignment of Escherichia coli in a slit

Sheats, Julian, Sclavi, Bianca, Cosentino Lagomarsino, Marco, Cicuta, Pietro, Dorfman, Kevin D.

Journal:

Royal Society Open Science

Year:

2017

Language:

english

File:

PDF, 1.23 MB

english, 2017

44

Cell-to-cell variability and robustness in S-phase duration from genome replication kinetics

Zhang, Qing, Bassetti, Federico, Gherardi, Marco, Lagomarsino, Marco Cosentino

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1022 KB

english, 2017

45

Characterizing the size and shape of sea ice floes

Gherardi, Marco, Lagomarsino, Marco Cosentino

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.26 MB

english, 2015

46

Relevant parameters in models of cell division control

Grilli, Jacopo, Osella, Matteo, Kennard, Andrew S., Lagomarsino, Marco Cosentino

Journal:

Physical Review E

Year:

2017

Language:

english

File:

PDF, 538 KB

english, 2017

47

Model of chromosomal loci dynamics in bacteria as fractional diffusion with intermittent transport

Gherardi, Marco, Calabrese, Ludovico, Tamm, Mikhail, Cosentino Lagomarsino, Marco

Journal:

Physical Review E

Year:

2017

Language:

english

File:

PDF, 548 KB

english, 2017

48

Current quantization and fractal hierarchy in a driven repulsive lattice gas

Rotondo, Pietro, Sellerio, Alessandro Luigi, Glorioso, Pietro, Caracciolo, Sergio, Cosentino Lagomarsino, Marco, Gherardi, Marco

Journal:

Physical Review E

Year:

2017

Language:

english

File:

PDF, 391 KB

english, 2017

49

Both genome and cytosol dynamics change in E. coli challenged with sublethal rifampicin

Wlodarski, Michal, Raciti, Bianca, Kotar, Jurij, Cosentino Lagomarsino, Marco, Fraser, Gillian M, Cicuta, Pietro

Journal:

Physical Biology

Year:

2017

Language:

english

File:

PDF, 2.87 MB

english, 2017

50

Cells Escape an Operational Mitotic Checkpoint through a Stochastic Process

Bonaiuti, Paolo, Chiroli, Elena, Gross, Fridolin, Corno, Andrea, Vernieri, Claudio, Štefl, Martin, Cosentino Lagomarsino, Marco, Knop, Michael, Ciliberto, Andrea

Journal:

Current Biology

Year:

2017

Language:

english

File:

PDF, 1.94 MB

english, 2017

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