Daniel Herschlag: search on Z-Library

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51

An Activator-Blocker Pair Provides a Controllable On-Off Switch for a Ketosteroid Isomerase Active Site Mutant

Lamba, Vandana, Yabukarski, Filip, Herschlag, Daniel

Journal:

Journal of the American Chemical Society

Year:

2017

Language:

english

File:

PDF, 1.65 MB

english, 2017

52

Correction to Uncovering the Determinants of a Highly Perturbed Tyrosine p K a in the Active Site of Ketosteroid Isomerase

Schwans, Jason P., Sunden, Fanny, Gonzalez, Ana, Tsai, Yingssu, Herschlag, Daniel

Journal:

Year:

2018

File:

PDF, 210 KB

2018

53

Effects of oligonucleotide length and atomic composition on stimulation of the ATPase activity of translation initiation factor eIF4A

PECK, MATTHEW L., HERSCHLAG, DANIEL

Journal:

Year:

1999

Language:

english

File:

PDF, 279 KB

english, 1999

54

Structure and Function Converge To Identify a Hydrogen Bond in a Group I Ribozyme Active Site

Marcello Forconi, Raghuvir N. Sengupta, Mao-Chin Liu, Alan C. Sartorelli, Joseph A. Piccirilli, Daniel Herschlag

Journal:

Angewandte Chemie

Year:

2009

Language:

english

File:

PDF, 671 KB

english, 2009

55

The far reaches of enzymology

Zalatan, Jesse G, Herschlag, Daniel

Journal:

Nature Chemical Biology

Year:

2009

Language:

english

File:

PDF, 332 KB

english, 2009

56

Nucleophilic Activation by Positioning in Phosphoryl Transfer Catalyzed by Nucleoside Diphosphate Kinase †,‡

Admiraal, Suzanne J., Schneider, Benoit, Meyer, Philippe, Janin, Joël, Véron, Michel, Deville-Bonne, Dominique, Herschlag, Daniel

Journal:

Year:

1999

Language:

english

File:

PDF, 225 KB

english, 1999

57

The P5abc Peripheral Element Facilitates Preorganization of the Tetrahymena Group I Ribozyme for Catalysis †

Engelhardt, Mark A., Doherty, Elizabeth A., Knitt, Deborah S., Doudna, Jennifer A., Herschlag, Daniel

Journal:

Year:

2000

Language:

english

File:

PDF, 296 KB

english, 2000

58

Ground State Destabilization from a Positioned General Base in the Ketosteroid Isomerase Active Site

Ruben, Eliza A., Schwans, Jason P., Sonnett, Matthew, Natarajan, Aditya, Gonzalez, Ana, Tsai, Yingssu, Herschlag, Daniel

Journal:

Year:

2013

Language:

english

File:

PDF, 1.71 MB

english, 2013

59

Additions and Corrections: Decreasing Reactivity with Increasing Nucleophile Basicity. The Effect of Solvation on β nuc for Phosphoryl Transfer to Amines

Jencks, William P., Haber, Martin T., Herschlag, Daniel., Nazaretian, Karen L.

Journal:

Journal of the American Chemical Society

Year:

1986

Language:

english

File:

PDF, 102 KB

english, 1986

60

Salt dependence of the radius of gyration and flexibility of single-stranded DNA in solution probed by small-angle x-ray scattering

Sim, Adelene Y. L., Lipfert, Jan, Herschlag, Daniel, Doniach, Sebastian

Journal:

Physical Review E

Year:

2012

Language:

english

File:

PDF, 587 KB

english, 2012

61

Visualizing the formation of an RNA folding intermediate through a fast highly modular secondary structure switch

Xue, Yi, Gracia, Brant, Herschlag, Daniel, Russell, Rick, Al-Hashimi, Hashim M.

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.13 MB

english, 2016

62

Hidden Structural Modules in a Cooperative RNA Folding Transition

Gracia, Brant, Al-Hashimi, Hashim M., Bisaria, Namita, Das, Rhiju, Herschlag, Daniel, Russell, Rick

Journal:

Year:

2018

Language:

english

File:

PDF, 4.29 MB

english, 2018

63

Serum electrolytes can promote hydroxyl radical-initiated biomolecular damage from inflammation

Komaki, Yukako, Simpson, Adam M-A., Choe, Jong Kwon, Pinney, Margaux M., Herschlag, Daniel, Chuang, Yi-Hsueh, Mitch, William A.

Journal:

Free Radical Biology and Medicine

Year:

2019

Language:

english

File:

PDF, 1.05 MB

english, 2019

64

New pathways in folding of the Tetrahymena group I RNA enzyme

Rick Russell, Daniel Herschlag

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 295 KB

english, 1999

65

The Fastest Global Events in RNA Folding: Electrostatic Relaxation and Tertiary Collapse of the Tetrahymena Ribozyme

Rhiju Das, Lisa W. Kwok, Ian S. Millett, Yu Bai, Thalia T. Mills, Jaby Jacob, Gregory S. Maskel, Soenke Seifert, Simon G.J. Mochrie, P. Thiyagarajan, Sebastian Doniach, Lois Pollack, Daniel Herschlag

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 867 KB

english, 2003

66

The Change in Hydrogen Bond Strength Accompanying Charge Rearrangement: Implications for Enzymatic Catalysis

Shu-Ou Shan and Daniel Herschlag

Journal:

Proceedings of the National Academy of Sciences

Year:

1996

Language:

english

File:

PDF, 1.08 MB

english, 1996

67

The solution structural ensembles of RNA kink-turn motifs and their protein complexes

Shi, Xuesong, Huang, Lin, Lilley, David M J, Harbury, Pehr B, Herschlag, Daniel

Journal:

Nature Chemical Biology

Year:

2016

Language:

english

File:

PDF, 1.42 MB

english, 2016

68

A High-Throughput Assay Platform for Next-Generation Mechanistic Enzymology and Applications

Markin, Craig J., Mokhtari, Daniel A., Sunden, Fanny, Appel, Mason J., Herschlag, Dan M., Fordyce, Polly

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 47 KB

2020

69

Catalytic promiscuity and the evolution of new enzymatic activities

Patrick J O'Brien, Daniel Herschlag

Journal:

Chemistry & Biology

Year:

1999

Language:

english

File:

PDF, 1.69 MB

english, 1999

70

Multiple native states reveal persistent ruggedness of an RNA folding landscape

Solomatin, Sergey V., Greenfeld, Max, Chu, Steven, Herschlag, Daniel

Journal:

Year:

2010

Language:

english

File:

PDF, 460 KB

english, 2010

71

The Paradoxical Behavior of a Highly Structured Misfolded Intermediate in RNA Folding

Rick Russell, Rhiju Das, Hyejean Suh, Kevin J. Travers, Alain Laederach, Mark A. Engelhardt, Daniel Herschlag

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 668 KB

english, 2006

72

Protonated 2‘-Aminoguanosine as a Probe of the Electrostatic Environment of the Active Site of the Tetrahymena Group I Ribozyme †

Shan, Shu-ou, Narlikar, Geeta J., Herschlag, Daniel

Journal:

Year:

1999

Language:

english

File:

PDF, 257 KB

english, 1999

73

Does the Active Site Arginine Change the Nature of the Transition State for Alkaline Phosphatase-Catalyzed Phosphoryl Transfer?

O'Brie, Patrick J., Herschlag, Daniel

Journal:

Journal of the American Chemical Society

Year:

1999

Language:

english

File:

PDF, 75 KB

english, 1999

74

Probing the Dynamics of the P1 Helix within the Tetrahymena Group I Intron

Shi, Xuesong, Mollova, Emilia T., Pljevaljčić, Goran, Millar, David P., Herschlag, Daniel

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 1.50 MB

english, 2009

75

Direct Measurement of Tertiary Contact Cooperativity in RNA Folding

Sattin, Bernie D., Zhao, Wei, Travers, Kevin, Chu, Steven, Herschlag, Daniel

Journal:

Journal of the American Chemical Society

Year:

2008

Language:

english

File:

PDF, 505 KB

english, 2008

76

The role of induced fit and conformational changes of enzymes in specificity and catalysis

Daniel Herschlag

Journal:

Bioorganic Chemistry

Year:

1988

Language:

english

File:

PDF, 2.50 MB

english, 1988

77

Mutations in a nonconserved sequence of the Tetrahymena ribozyme increase activity and specificity

Benjamin Young, Daniel Herschlag, Thomas R. Cech

Journal:

Year:

1991

Language:

english

File:

PDF, 2.42 MB

english, 1991

78

Measuring the Folding Transition Time of Single RNA Molecules

Lee, Tae-Hee, Lapidus, Lisa J., Zhao, Wei, Travers, Kevin J., Herschlag, Daniel, Chu, Steven

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 1.20 MB

english, 2007

79

Evaluating the Catalytic Contribution from the Oxyanion Hole in Ketosteroid Isomerase

Schwans, Jason P., Sunden, Fanny, Gonzalez, Ana, Tsai, Yingssu, Herschlag, Daniel

Journal:

Journal of the American Chemical Society

Year:

2011

Language:

english

File:

PDF, 1.55 MB

english, 2011

80

The effects of magnesium2+, hydrogen bonding, and steric factors on rate and equilibrium constants for phosphoryl transfer between carboxylate ions and pyridines

Herschlag, Daniel, Jencks, William P.

Journal:

Journal of the American Chemical Society

Year:

1990

Language:

english

File:

PDF, 1.09 MB

english, 1990

81

Identification of the Hammerhead Ribozyme Metal Ion Binding Site Responsible for Rescue of the Deleterious Effect of a Cleavage Site Phosphorothioate †

Wang, Shenglong, Karbstein, Katrin, Peracchi, Alessio, Beigelman, Leonid, Herschlag, Daniel

Journal:

Year:

1999

Language:

english

File:

PDF, 205 KB

english, 1999

82

Origins of catalysis by computationally designed retroaldolase enzymes

Jonathan K. Lassila, David Baker, Daniel Herschlag and Stephen J. Benkovic

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.36 MB

english, 2010

83

Mapping the transition state for ATP hydrolysis: implications for enzymatic catalysis

Suzanne J. Admiraal, Daniel Herschlag

Journal:

Chemistry & Biology

Year:

1995

Language:

english

File:

PDF, 3.30 MB

english, 1995

84

RNA simulations: probing hairpin unfolding and the dynamics of a GNRA tetraloop

Eric J. Sorin, Mark A. Engelhardt, Daniel Herschlag, Vijay S. Pande

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 1002 KB

english, 2002

85

Probing the folding landscape of the Tetrahymena ribozyme: commitment to form the native conformation is late in the folding pathway

Rick Russell, Daniel Herschlag

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 263 KB

english, 2001

86

Ras-Catalyzed Hydrolysis of GTP: A New Perspective from Model Studies

Karen A. Maegley, Suzanne J. Admiraal and Daniel Herschlag

Journal:

Proceedings of the National Academy of Sciences

Year:

1996

Language:

english

File:

PDF, 1.49 MB

english, 1996

87

Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 2. Kinetic description of the reaction of an RNA substrate that forms a mismatch at the active site

Herschlag, Daniel, Cech, Thomas R.

Journal:

Year:

1990

Language:

english

File:

PDF, 2.37 MB

english, 1990

88

Use of Duplex Rigidity for Stability and Specificity in RNA Tertiary Structure †

Narlikar, Geeta J., Bartley, Laura E., Herschlag, Daniel

Journal:

Year:

2000

Language:

english

File:

PDF, 152 KB

english, 2000

89

Three αSNAP and 10 ATP Molecules Are Used in SNARE Complex Disassembly by N -ethylmaleimide-sensitive Factor (NSF)

Shah, Niket, Colbert, Karen N., Enos, Michael D., Herschlag, Daniel, Weis, William I.

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 2.63 MB

english, 2015

90

From static to dynamic: the need for structural ensembles and a predictive model of RNA folding and function

Herschlag, Daniel, Allred, Benjamin E, Gowrishankar, Seshadri

Journal:

Current Opinion in Structural Biology

Year:

2015

Language:

english

File:

PDF, 1.32 MB

english, 2015

91

Kemp Eliminase Activity of Ketosteroid Isomerase

Lamba, Vandana, Sanchez, Enis, Fanning, Lauren Rose, Howe, Kathryn, Alvarez, Maria Alejandra, Herschlag, Daniel, Forconi, Marcello

Journal:

Year:

2017

Language:

english

File:

PDF, 2.98 MB

english, 2017

92

DNA cleavage catalysed by the ribozyme from Tetrahymena

Herschlag, Daniel, Cech, Thomas R.

Journal:

Year:

1990

File:

PDF, 723 KB

1990

93

Comparative Enzymology in the Alkaline Phosphatase Superfamily to Determine the Catalytic Role of an Active-Site Metal Ion

Jesse G. Zalatan, Timothy D. Fenn, Daniel Herschlag

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 1.11 MB

english, 2008

94

The nature of the transition state for enzyme-catalyzed phosphoryl transfer. Hydrolysis of O-aryl phosphorothioates by alkaline phosphatase

Hollfelder, Florian, Herschlag, Daniel

Journal:

Year:

1995

Language:

english

File:

PDF, 1.20 MB

english, 1995

95

Use of Intrinsic Binding Energy for Catalysis by an RNA Enzyme

Klemens J. Hertel, Alessio Peracchi, Olke C. Uhlenbeck and Daniel Herschlag

Journal:

Proceedings of the National Academy of Sciences

Year:

1997

Language:

english

File:

PDF, 1.18 MB

english, 1997

96

Probing the Origin of the Compromised Catalysis of E. coli Alkaline Phosphatase in its Promiscuous Sulfatase Reaction

Catrina, Irina, O'Brien, Patrick J., Purcell, Jamie, Nikolic-Hughes, Ivana, Zalatan, Jesse G., Hengge, Alvan C., Herschlag, Daniel

Journal:

Journal of the American Chemical Society

Year:

2007

Language:

english

File:

PDF, 108 KB

english, 2007

97

Do Ligand Binding and Solvent Exclusion Alter the Electrostatic Character within the Oxyanion Hole of an Enzymatic Active Site?

Sigala, Paul A., Fafarman, Aaron T., Bogard, Patrick E., Boxer, Steven G., Herschlag, Daniel

Journal:

Journal of the American Chemical Society

Year:

2007

Language:

english

File:

PDF, 245 KB

english, 2007

98

Structure–Function Analysis from the Outside In: Long-Range Tertiary Contacts in RNA Exhibit Distinct Catalytic Roles

Benz-Moy, Tara L., Herschlag, Daniel

Journal:

Year:

2011

Language:

english

File:

PDF, 5.23 MB

english, 2011

99

Quantitating Tertiary Binding Energies of 2‘ OH Groups on the P1 Duplex of the Tetrahymena Ribozyme: Intrinsic Binding Energy in an RNA Enzyme †

Narlikar, Geeta J., Khosla, Mala, Usman, Nassim, Herschlag, Daniel

Journal:

Year:

1997

Language:

english

File:

PDF, 497 KB

english, 1997

100

Evidence that metaphosphate monoanion is not an intermediate in solvolysis reactions in aqueous solution

Herschlag, Daniel, Jencks, William P.

Journal:

Journal of the American Chemical Society

Year:

1989

Language:

english

File:

PDF, 1.01 MB

english, 1989

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