Davide Marenduzzo: search on Z-Library

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1

Kinetic theory of pattern formation in mixtures of microtubules and molecular motors

Maryshev, Ivan, Marenduzzo, Davide, Goryachev, Andrew B., Morozov, Alexander

Journal:

Physical Review E

Year:

2018

Language:

english

File:

PDF, 5.13 MB

english, 2018

2

Polymers with spatial or topological constraints: Theoretical and computational results

Cristian Micheletti, Davide Marenduzzo, Enzo Orlandini

Journal:

Physics Reports

Year:

2011

Language:

english

File:

PDF, 2.01 MB

english, 2011

3

Continuum Theory of Phase Separation Kinetics for Active Brownian Particles

Stenhammar, Joakim, Tiribocchi, Adriano, Allen, Rosalind J., Marenduzzo, Davide, Cates, Michael E.

Journal:

Physical Review Letters

Year:

2013

Language:

english

File:

PDF, 628 KB

english, 2013

4

Activity-induced clustering in model dumbbell swimmers: The role of hydrodynamic interactions

Furukawa, Akira, Marenduzzo, Davide, Cates, Michael E.

Journal:

Physical Review E

Year:

2014

Language:

english

File:

PDF, 3.48 MB

english, 2014

5

Motility-induced phase separation and coarsening in active matter

Gonnella, Giuseppe, Marenduzzo, Davide, Suma, Antonio, Tiribocchi, Adriano

Journal:

Comptes Rendus Physique

Year:

2015

File:

PDF, 3.04 MB

2015

6

Simulated binding of transcription factors to active and inactive regions folds human chromosomes into loops, rosettes and topological domains

Brackley, Chris A., Johnson, James, Kelly, Steven, Cook, Peter R., Marenduzzo, Davide

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 2.86 MB

english, 2016

7

Microfluidic flow of cholesteric liquid crystals

Wiese, Oliver, Marenduzzo, Davide, Henrich, Oliver

Journal:

Year:

2016

Language:

english

File:

PDF, 13.00 MB

english, 2016

8

Self-assembly of knots and links

Orlandini, Enzo, Polles, Guido, Marenduzzo, Davide, Micheletti, Cristian

Journal:

Journal of Statistical Mechanics Theory and Experiment

Year:

2017

Language:

english

File:

PDF, 2.39 MB

english, 2017

9

Ring Polymers: Threadings, Knot Electrophoresis and Topological Glasses

Michieletto, Davide, Marenduzzo, Davide, Orlandini, Enzo, Turner, Matthew

Journal:

Year:

2017

Language:

english

File:

PDF, 11.29 MB

english, 2017

10

Geometry of Compact Tubes and Protein Structures

Banavar, Jayanth R., Flammini, Alessandro, Marenduzzo, Davide, Maritan, Amos, Trovato, Antonio

Journal:

Year:

2003

Language:

english

File:

PDF, 262 KB

english, 2003

11

Shear dynamics in cholesterics

Enzo Orlandini, Davide Marenduzzo, Julia M. Yeomans

Journal:

Computer Physics Communications

Year:

2005

Language:

english

File:

PDF, 130 KB

english, 2005

12

Physics of thick polymers

Davide Marenduzzo, Alessandro Flammini, Antonio Trovato, Jayanth R. Banavar, Amos Maritan

Journal:

Journal of Polymer Science Part B: Polymer Physics

Year:

2005

Language:

english

File:

PDF, 501 KB

english, 2005

13

Non-specific (entropic) forces as major determinants of the structure of mammalian chromosomes

Kieran Finan, Peter R. Cook, Davide Marenduzzo

Journal:

Chromosome Research

Year:

2011

Language:

english

File:

PDF, 447 KB

english, 2011

14

Localisation of DivIVA by targeting to negatively curved membranes

Lenarcic, Rok, Halbedel, Sven, Visser, Loek, Shaw, Michael, Wu, Ling Juan, Errington, Jeff, Marenduzzo, Davide, Hamoen, Leendert W

Journal:

The EMBO Journal

Year:

2009

Language:

english

File:

PDF, 2.02 MB

english, 2009

15

Colloidal particles at the interface between an isotropic liquid and a chiral liquid crystal

Pawsey, Anne C., Lintuvuori, Juho S., Wood, Tiffany A., Thijssen, Job H. J., Marenduzzo, Davide, Clegg, Paul S.

Journal:

Year:

2012

Language:

english

File:

PDF, 632 KB

english, 2012

16

Modeling a Self-Avoiding Chromatin Loop: Relation to the Packing Problem, Action-at-a-Distance, and Nuclear Context

Michaël Bon, Davide Marenduzzo, Peter R. Cook

Journal:

Year:

2006

Language:

english

File:

PDF, 395 KB

english, 2006

17

What are the molecular ties that maintain genomic loops?

Davide Marenduzzo, Inês Faro-Trindade, Peter R. Cook

Journal:

Trends in Genetics

Year:

2007

Language:

english

File:

PDF, 869 KB

english, 2007

18

Thermodynamics of DNA Packaging Inside a Viral Capsid: The Role of DNA Intrinsic Thickness

Davide Marenduzzo, Cristian Micheletti

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 349 KB

english, 2003

19

Entropy-Driven Genome Organization

Marenduzzo, Davide, Micheletti, Cristian, Cook, Peter R.

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 411 KB

english, 2006

20

Lateral Dynamics of Proteins with Polybasic Domain on Anionic Membranes: A Dynamic Monte-Carlo Study

Kiselev, Vladimir Yu., Marenduzzo, Davide, Goryachev, Andrew B.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 558 KB

english, 2011

21

Inferring the Diameter of a Biopolymer from Its Stretching Response

Toan, Ngo Minh, Marenduzzo, Davide, Micheletti, Cristian

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 151 KB

english, 2005

22

Equilibrium and dynamical behavior in the Vicsek model for self-propelled particles under shear

Gustavo P. Saracco, Giuseppe Gonnella, Davide Marenduzzo, Enzo Orlandini

Journal:

Central European Journal of Physics

Year:

2012

Language:

english

File:

PDF, 792 KB

english, 2012

23

Rheology of cubic blue phases

Henrich, Oliver, Stratford, Kevin, Coveney, Peter V., Cates, Michael E., Marenduzzo, Davide

Journal:

Year:

2013

Language:

english

File:

PDF, 5.46 MB

english, 2013

24

Active polar fluid flow in finite droplets

A. Whitfield, Carl, Marenduzzo, Davide, Voituriez, Raphaël, J. Hawkins, Rhoda

Journal:

The European Physical Journal E

Year:

2014

Language:

english

File:

PDF, 1.20 MB

english, 2014

25

Simulations of Viral DNA Packaging and Ejection: Geometrical Order and Topological Disorder

Marenduzzo, Davide, Orlandini, Enzo, Stasiak, Andrzej, Sumners, De Witt, Tubiana, Luca, Micheletti, Cristian

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 35 KB

english, 2011

26

Entropie Organization of Interphase Chromosomes

Peter R. Cook and Davide Marenduzzo

Journal:

The Journal of Cell Biology

Year:

2009

Language:

english

File:

PDF, 1.98 MB

english, 2009

27

Scalar φ4 field theory for active-particle phase separation

Wittkowski, Raphael, Tiribocchi, Adriano, Stenhammar, Joakim, Allen, Rosalind J., Marenduzzo, Davide, Cates, Michael E.

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 801 KB

english, 2014

28

Colloids in a bacterial bath: simulations and experiments

Valeriani, Chantal, Li, Martin, Novosel, John, Arlt, Jochen, Marenduzzo, Davide

Journal:

Year:

2011

Language:

english

File:

PDF, 543 KB

english, 2011

29

Threading Dynamics of Ring Polymers in a Gel

Michieletto, Davide, Marenduzzo, Davide, Orlandini, Enzo, Alexander, Gareth P., Turner, Matthew S.

Journal:

ACS Macro Letters

Year:

2014

Language:

english

File:

PDF, 1.35 MB

english, 2014

30

Enhanced diffusion of tracer particles in dilute bacterial suspensions

Morozov, Alexander, Marenduzzo, Davide

Journal:

Year:

2014

Language:

english

File:

PDF, 629 KB

english, 2014

31

Nonequilibrium steady states in polar active fluids

Tjhung, Elsen, Cates, Michael E., Marenduzzo, Davide

Journal:

Year:

2011

Language:

english

File:

PDF, 1.00 MB

english, 2011

32

Dynamics of self-threading ring polymers in a gel

Michieletto, Davide, Marenduzzo, Davide, Orlandini, Enzo, Alexander, Gareth P., Turner, Matthew S.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.68 MB

english, 2014

33

Lateral dynamics of charged lipids and peripheral proteins in spatially heterogeneous membranes: Comparison of continuous and Monte Carlo approaches

Kiselev, Vladimir Yu., Leda, Marcin, Lobanov, Alexey I., Marenduzzo, Davide, Goryachev, Andrew B.

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 775 KB

english, 2011

34

Geometry of proteins: Hydrogen bonding, sterics, and marginally compact tubes

Banavar, Jayanth R., Cieplak, Marek, Flammini, Alessandro, Hoang, Trinh X., Kamien, Randall D., Lezon, Timothy, Marenduzzo, Davide, Maritan, Amos, Seno, Flavio, Snir, Yehuda, Trovato, Antonio

Journal:

Physical Review E

Year:

2006

Language:

english

File:

PDF, 58 KB

english, 2006

35

Self-assembling knots of controlled topology by designing the geometry of patchy templates

Polles, Guido, Marenduzzo, Davide, Orlandini, Enzo, Micheletti, Cristian

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 1.74 MB

english, 2015

36

Interfacial self-assembly of a bacterial hydrophobin

Bromley, Keith M., Morris, Ryan J., Hobley, Laura, Brandani, Giovanni, Gillespie, Rachel M. C., McCluskey, Matthew, Zachariae, Ulrich, Marenduzzo, Davide, Stanley-Wall, Nicola R., MacPhee, Cait. E.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

37

Effect of DNA conformation on facilitated diffusion

Brackley, Chris A., Cates, Mike E., Marenduzzo, Davide

Journal:

Biochemical Society Transactions

Year:

2013

Language:

english

File:

PDF, 369 KB

english, 2013

38

Activity-Induced Phase Separation and Self-Assembly in Mixtures of Active and Passive Particles

Stenhammar, Joakim, Wittkowski, Raphael, Marenduzzo, Davide, Cates, Michael E.

Journal:

Physical Review Letters

Year:

2015

Language:

english

File:

PDF, 3.42 MB

english, 2015

39

Monte Carlo and event-driven dynamics of Brownian particles with orientational degrees of freedom

Romano, Flavio, De Michele, Cristiano, Marenduzzo, Davide, Sanz, Eduardo

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 461 KB

english, 2011

40

Is the kinetoplast DNA a percolating network of linked rings at its critical point?

Michieletto, Davide, Marenduzzo, Davide, Orlandini, Enzo

Journal:

Physical Biology

Year:

2015

Language:

english

File:

PDF, 1.34 MB

english, 2015

41

The bacterial hydrophobin BslA is a switchable ellipsoidal Janus nanocolloid

Brandani, Giovanni B., Schor, Marieke, Morris, Ryan, Stanley-Wall, Nicola, MacPhee, Cait E., Marenduzzo, Davide, Zachariae, Ulrich

Journal:

Year:

2015

Language:

english

File:

PDF, 2.72 MB

english, 2015

42

Force-induced unfolding of a homopolymer on a fractal lattice: exact results versus mean-field predictions

Marenduzzo, Davide, Maritan, Amos, Seno, Flavio

Journal:

Journal of Physics A: Mathematical and General Physics

Year:

2002

Language:

english

File:

PDF, 97 KB

english, 2002

43

Spontaneous flow in polar active fluids: the effect of a phenomenological self propulsion-like term

Bonelli, Francesco, Gonnella, Giuseppe, Tiribocchi, Adriano, Marenduzzo, Davide

Journal:

The European Physical Journal E

Year:

2016

Language:

english

File:

PDF, 1.61 MB

english, 2016

44

Ordering dynamics of blue phases entails kinetic stabilization of amorphous networks

Oliver Henrich, Kevin Stratford, Davide Marenduzzo, Michael E. Cates and Tom C. Lubensky

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.09 MB

english, 2010

45

Curvature-driven positioning of Turing patterns in phase-separating curved membranes

Vandin, Giulio, Marenduzzo, Davide, Goryachev, Andrew, Orlandini, Enzo

Journal:

Year:

2016

Language:

english

File:

PDF, 2.03 MB

english, 2016

46

Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models

Brackley, Chris A., Brown, Jill M., Waithe, Dominic, Babbs, Christian, Davies, James, Hughes, Jim R., Buckle, Veronica J., Marenduzzo, Davide

Journal:

Year:

2016

Language:

english

File:

PDF, 3.74 MB

english, 2016

47

The Depletion Attraction: An Underappreciated Force Driving Cellular Organization

Davide Marenduzzo, Kieran Finan and Peter R. Cook

Journal:

The Journal of Cell Biology

Year:

2006

Language:

english

File:

PDF, 579 KB

english, 2006

48

The knotted strands of life

Marenduzzo, Davide, Micheletti, Cristian, Orlandini, Enzo

Journal:

Year:

2013

Language:

english

File:

PDF, 1.66 MB

english, 2013

49

Active Model H: Scalar Active Matter in a Momentum-Conserving Fluid

Tiribocchi, Adriano, Wittkowski, Raphael, Marenduzzo, Davide, Cates, Michael E.

Journal:

Physical Review Letters

Year:

2015

Language:

english

File:

PDF, 633 KB

english, 2015

50

Clustering and Pattern Formation in Chemorepulsive Active Colloids

Liebchen, Benno, Marenduzzo, Davide, Pagonabarraga, Ignacio, Cates, Michael E.

Journal:

Physical Review Letters

Year:

2015

Language:

english

File:

PDF, 3.28 MB

english, 2015