Dimitrios Vavylonis: search on Z-Library

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1

Nanoscale movements of cellulose microfibrils in primary cell walls

Zhang, Tian, Vavylonis, Dimitrios, Durachko, Daniel M., Cosgrove, Daniel J.

Journal:

Year:

2017

Language:

english

File:

PDF, 7.20 MB

english, 2017

2

Fission Yeast Polarization: Modeling Cdc42 Oscillations, Symmetry Breaking, and Zones of Activation and Inhibition

Khalili, Bita, Lovelace, Hailey D., Rutkowski, David M., Holz, Danielle, Vavylonis, Dimitrios

Journal:

Year:

2020

File:

PDF, 6.16 MB

2020

3

Segmentation and tracking of cytoskeletal filaments using open active contours

Matthew B. Smith, Hongsheng Li, Tian Shen, Xiaolei Huang, Eddy Yusuf, Dimitrios Vavylonis

Journal:

Year:

2010

Language:

english

File:

PDF, 638 KB

english, 2010

4

Pulsed Laser Polymerization at Low Conversions: Broadening and Chain Transfer Effects

Ben O'Shaughnessy, Dimitrios Vavylonis

Journal:

Macromolecular Theory and Simulations

Year:

2003

Language:

english

File:

PDF, 197 KB

english, 2003

5

Irreversibility and Polymer Adsorption

Vavylonis, Dimitrios, O’Shaughnessy, Ben

Journal:

Physical Review Letters

Year:

2003

Language:

english

File:

PDF, 223 KB

english, 2003

6

A review of models of fluctuating protrusion and retraction patterns at the leading edge of motile cells

Gillian L. Ryan, Naoki Watanabe, Dimitrios Vavylonis

Journal:

Year:

2012

Language:

english

File:

PDF, 1.26 MB

english, 2012

7

Model of Formin-Associated Actin Filament Elongation

Dimitrios Vavylonis, David R. Kovar, Ben O'Shaughnessy, Thomas D. Pollard

Journal:

Year:

2006

Language:

english

File:

PDF, 632 KB

english, 2006

8

Turnover Dynamics of Diffuse Actin and Regulators At the Leading Edge

Smith, Matthew B., Watanabe, Naoki, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 51 KB

english, 2010

9

Interactive, Computer-Assisted Tracking of Speckle Trajectories in Fluorescence Microscopy: Application to Actin Polymerization and Membrane Fusion

Smith, Matthew B., Karatekin, Erdem, Gohlke, Andrea, Mizuno, Hiroaki, Watanabe, Naoki, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 1.18 MB

english, 2011

10

Excitable Actin Dynamics in Lamellipodial Protrusion and Retraction

Ryan, Gillian L., Petroccia, Heather M., Watanabe, Naoki, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 1.70 MB

english, 2012

11

Molecular viewing of actin polymerizing actions and beyond: Combination analysis of single-molecule speckle microscopy with modeling, FRAP and s-FDAP (sequential fluorescence decay after photoactivation)

Watanabe, Naoki, Yamashiro, Sawako, Vavylonis, Dimitrios, Kiuchi, Tai

Journal:

Development, Growth & Differentiation

Year:

2013

Language:

english

File:

PDF, 395 KB

english, 2013

12

3D actin network centerline extraction with multiple active contours

Xu, Ting, Vavylonis, Dimitrios, Huang, Xiaolei

Journal:

Medical Image Analysis

Year:

2014

Language:

english

File:

PDF, 3.27 MB

english, 2014

13

A Two-Dimensional Model of Leading Edge Protrusion and Retraction Driven by Excitable Actin Dynamics

Ryan, Gillian L., Watanabe, Naoki, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 39 KB

english, 2012

14

Erratum

Ryan, Gillian L., Watanabe, Naoki, Vavylonis, Dimitrios

Journal:

Annales Françaises d'Anesthésie et de Réanimation

Year:

1987

File:

PDF, 49 KB

1987

15

Segmentation and Tracking of Cytoskeletal Filaments Using Open Active Contours

Smith, Matthew B., Li, Hongsheng, Shen, Tian, Huang, Xiaolei, Yusuf, Eddy, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 57 KB

english, 2011

16

An Autocatalytic Activator-Inhibitor Model of Actin Polymerization at the Leading Edge of Fibroblast Lamellipodia

Ryan, Gillian L., Smith, Matthew B., Petroccia, Heather, Watanabe, Naoki, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 52 KB

english, 2011

17

Stress Fiber Organization and Dynamics in Cells Adhered to Substrates of Varying Stiffness

Nie, Wei, Wei, Ming-Tzo, Biaggio, Ivan, Ou-Yang, H. Daniel, Jedlicka, Sabrina, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 35 KB

english, 2012

18

Model of the Role of Actin Crosslinker Proteins during Contractile Ring Assembly in Fission Yeast

Ojkic, Nikola, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 36 KB

english, 2011

19

A Model of Fission-Yeast Cell Shape Driven by Membrane-Bound Growth Factors

Drake, Tyler, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 34 KB

english, 2012

20

Distributed Actin Turnover in the Lamellipodium and FRAP Kinetics

Smith, Matthew B., Kiuchi, Tai, Watanabe, Naoki, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 951 KB

english, 2013

21

Dynamics of Non-Muscle Myosin II Organization into Stress Fibers and Contractile Networks

Nie, Wei, Wei, Ming-tzo, Ou-Yang, H. Daniel, Jedlicka, Sabrina, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 40 KB

english, 2013

22

Myosin Cortical Assembly and Spindle Oscillations During Hela Cell Division

Wei, Ming-Tzo, Vavylonis, Dimitrios, Ou-Yang, H. Daniel

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 105 KB

english, 2011

23

Modeling Fission-Yeast Growth Partitioning and Oscillating Cortical Cdc42 Populations

Drake, Tyler, Das, Maitreyi, Buchwald, Peter, Verde, Fulvia, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 57 KB

english, 2011

24

Model of Yeast Actin Cable Distribution and Dynamics

Tang, Haosu, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 54 KB

english, 2013

25

3D Model of Cytokinetic Ring Assembly in Fission Yeast

Bidone, Tamara C., Tang, Haosu, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 38 KB

english, 2014

26

Model of Capping Protein and Arp2/3 Complex Turnover in the Lamellipodium based on Single Molecule Statistics

McMillen, Laura M., Smith, Matthew B., Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 38 KB

english, 2013

27

Model of Condensation of an Actomyosin Network into a Contractile Ring for Fission Yeast Cell Division: The Effect of Actin Cross-Linkers Alpha-Actinin and Fimbrin

Ojkic, Nikola, Laporte, Damien, Wu, Jian-Qiu, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 88 KB

english, 2012

28

Reactive Polymer Interfaces: How Reaction Kinetics Depend on Reactivity and Density of Chemical Groups

O'Shaughnessy, Ben, Vavylonis, Dimitrios

Journal:

Year:

1999

Language:

english

File:

PDF, 331 KB

english, 1999

29

The Ultrasensitivity of Living Polymers

O’Shaughnessy, Ben, Vavylonis, Dimitrios

Journal:

Physical Review Letters

Year:

2003

Language:

english

File:

PDF, 184 KB

english, 2003

30

Interfacial Reactions: Mixed Order Kinetics and Segregation Effects

O'Shaughnessy, Ben, Vavylonis, Dimitrios

Journal:

Physical Review Letters

Year:

2000

Language:

english

File:

PDF, 189 KB

english, 2000

31

Dynamic Network Morphology and Tension Buildup in a 3D Model of Cytokinetic Ring Assembly

Bidone, Tamara C., Tang, Haosu, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 2.30 MB

english, 2014

32

Kinetics of Myosin Node Aggregation into a Contractile Ring

Ojkic, Nikola, Vavylonis, Dimitrios

Journal:

Physical Review Letters

Year:

2010

Language:

english

File:

PDF, 1.26 MB

english, 2010

33

Cytoskeletal dynamics in fission yeast: A review of models for polarization and division

Drake, Tyler, Vavylonis, Dimitrios

Journal:

Year:

2010

Language:

english

File:

PDF, 439 KB

english, 2010

34

[IEEE 2011 8th IEEE International Symposium on Biomedical Imaging (ISBI 2011) - Chicago, IL, USA (2011.03.30-2011.04.2)] 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Extraction and analysis of actin networks based on Open Active Contour models

Xu, Ting, Li, Hongsheng, Shen, Tian, Ojkic, Nikola, Vavylonis, Dimitrios, Huang, Xiaolei

Year:

2011

Language:

english

File:

PDF, 854 KB

english, 2011

35

[IEEE 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI) - Boston, MA, USA (2009.06.28-2009.07.1)] 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Automated actin filament segmentation, tracking and tip elongation measurements based on open active contour models

Hongsheng Li,, Tian Shen,, Smith, Matthew B., Fujiwara, Ikuko, Vavylonis, Dimitrios, Xiaolei Huang,

Year:

2009

Language:

english

File:

PDF, 341 KB

english, 2009

36

Formation of contractile networks and fibers in the medial cell cortex through myosin-II turnover, contraction, and stress-stabilization

Nie, Wei, Wei, Ming-Tzo, Ou-Yang, H. Daniel, Jedlicka, Sabrina S., Vavylonis, Dimitrios

Journal:

Year:

2015

Language:

english

File:

PDF, 5.43 MB

english, 2015

37

Theoretical Model for Cellular Shapes Driven by Protrusive and Adhesive Forces

Kabaso, Doron, Shlomovitz, Roie, Schloen, Kathrin, Stradal, Theresia, Gov, Nir S., Vavylonis, Dimitrios

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 819 KB

english, 2011

38

Model of Fission Yeast Cell Shape Driven by Membrane-Bound Growth Factors and the Cytoskeleton

Drake, Tyler, Vavylonis, Dimitrios, Haugh, Jason M.

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 1.27 MB

english, 2013

39

Spontaneous Cdc42 Polarization Independent of GDI-Mediated Extraction and Actin-Based Trafficking

Bendezú, Felipe O., Vincenzetti, Vincent, Vavylonis, Dimitrios, Wyss, Romain, Vogel, Horst, Martin, Sophie G., Lew, Daniel

Journal:

Year:

2015

Language:

english

File:

PDF, 8.87 MB

english, 2015

40

Two Functionally Distinct Sources of Actin Monomers Supply the Leading Edge of Lamellipodia

Vitriol, Eric A., McMillen, Laura M., Kapustina, Maryna, Gomez, Shawn M., Vavylonis, Dimitrios, Zheng, James Q.

Journal:

Year:

2015

Language:

english

File:

PDF, 5.01 MB

english, 2015

41

Non-equilibrium in adsorbed polymer layers

O’Shaughnessy, Ben, Vavylonis, Dimitrios

Journal:

Journal of Physics Condensed Matter

Year:

2005

Language:

english

File:

PDF, 1.15 MB

english, 2005

42

Model of myosin node aggregation into a contractile ring: the effect of local alignment

Ojkic, Nikola, Wu, Jian-Qiu, Vavylonis, Dimitrios

Journal:

Journal of Physics Condensed Matter

Year:

2011

Language:

english

File:

PDF, 1.46 MB

english, 2011

43

ER-PM Contacts Define Actomyosin Kinetics for Proper Contractile Ring Assembly

Zhang, Dan, Bidone, Tamara C., Vavylonis, Dimitrios

Journal:

Current Biology

Year:

2016

Language:

english

File:

PDF, 2.95 MB

english, 2016

44

SPIE Proceedings [SPIE SPIE Nanoscience + Engineering - San Diego, California, United States (Sunday 9 August 2015)] Optical Trapping and Optical Micromanipulation XII - Noise, fluctuations, and nonlinear mechanical properties of living cells (Presentation Recording)

Dholakia, Kishan, Spalding, Gabriel C., Ou-Yang, H. Daniel, Wei, Ming Tzo, Vavylonis, Dimitrios, Jedlicka, Sabrina

Year:

2015

Language:

english

File:

PDF, 113 KB

english, 2015

45

Local Pheromone Release from Dynamic Polarity Sites Underlies Cell-Cell Pairing during Yeast Mating

Merlini, Laura, Khalili, Bita, Bendezú, Felipe O., Hurwitz, Daniel, Vincenzetti, Vincent, Vavylonis, Dimitrios, Martin, Sophie G.

Journal:

Current Biology

Year:

2016

Language:

english

File:

PDF, 3.41 MB

english, 2016

46

Local Pheromone Release from Dynamic Polarity Sites Underlies Cell-Cell Pairing during Yeast Mating

Merlini, Laura, Bendezu, Felipe O., Khalili, Bita, Hurwitz, Daniel, Vincenzetti, Vincent, Vavylonis, Dimitrios, Martin, Sophie G.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 41 KB

english, 2016

47

3D Model of Fission Yeast Contractile Ring Assembly: Effects of Cytokinetic Node Interaction with the Cell Membrane and Myosin Motors

Bidone, Tamara C., Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 41 KB

english, 2016

48

Dynamic Actomyosin Network Morphology in 3D Model of Cytokinetic Ring Assembly

Bidone, Tamara C., Tang, Haosu, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 37 KB

english, 2015

49

Simulation of the Effect of Confinement in Actin Ring Formation

Adeli Koudehi, Maral, Tang, Haosu, Vavylonis, Dimitrios

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 41 KB

english, 2016

50

Computational model of polarized actin cables and cytokinetic actin ring formation in budding yeast

Tang, Haosu, Bidone, Tamara C., Vavylonis, Dimitrios

Journal:

Year:

2015

Language:

english

File:

PDF, 954 KB

english, 2015