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1

[Advances in Intelligent Systems and Computing] Practical Applications of Computational Biology & Bioinformatics, 14th International Conference (PACBB 2020) Volume 1240 || ProPythia: A Python Automated Platform for the Classification of Proteins Using Machine Learning

Panuccio, Gabriella, Rocha, Miguel, Fdez-Riverola, Florentino, Mohamad, Mohd Saberi, Casado-Vara, Roberto

Year:

2021

File:

PDF, 503 KB

2021

2

Web scraping technologies in an API world

Glez-Pena, D., Lourenco, A., Lopez-Fernandez, H., Reboiro-Jato, M., Fdez-Riverola, F.

Journal:

Briefings in Bioinformatics

Year:

2014

Language:

english

File:

PDF, 457 KB

english, 2014

3

MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of action of the human microbiota

Blanco-Míguez, Aitor, Gutiérrez-Jácome, Alberto, Fdez-Riverola, Florentino, Lourenço, Anália, Sánchez, Borja

Journal:

Year:

2017

Language:

english

File:

PDF, 1.15 MB

english, 2017

4

[Advances in Intelligent Systems and Computing] Practical Applications of Computational Biology and Bioinformatics, 12th International Conference Volume 803 || A Hybrid of Simple Constrained Artificial Bee Colony Algorithm and Flux Balance Analysis for Enhancing Lactate and Succinate in Escherichia Coli

Fdez-Riverola, Florentino, Mohamad, Mohd Saberi, Rocha, Miguel, De Paz, Juan F., González, Pascual

Year:

2019

Language:

english

File:

PDF, 561 KB

english, 2019

5

Online visibility of software-related web sites: The case of biomedical text mining tools

Pérez-Rodríguez, Gael, Pérez-Pérez, Martín, Fdez-Riverola, Florentino, Lourenço, Anália

Journal:

Information Processing & Management

Year:

2019

Language:

english

File:

PDF, 7.25 MB

english, 2019

6

[Advances in Intelligent Systems and Computing] Practical Applications of Computational Biology & Bioinformatics, 14th International Conference (PACBB 2020) Volume 1240 ||

Panuccio, Gabriella, Rocha, Miguel, Fdez-Riverola, Florentino, Mohamad, Mohd Saberi, Casado-Vara, Roberto

Year:

2021

File:

PDF, 15.05 MB

2021

7

Using evolutionary computation for discovering spam patterns from e-mail samples

Ruano-Ordás, David, Fdez-Riverola, Florentino, R. Méndez, José

Journal:

Information Processing & Management

Year:

2018

Language:

english

File:

PDF, 1.47 MB

english, 2018

8

[Advances in Intelligent Systems and Computing] Practical Applications of Computational Biology and Bioinformatics, 12th International Conference Volume 803 || Parameter Estimation of Essential Amino Acids in Arabidopsis thaliana Using Hybrid of Bees Algorithm and Harmony Search

Fdez-Riverola, Florentino, Mohamad, Mohd Saberi, Rocha, Miguel, De Paz, Juan F., González, Pascual

Year:

2019

Language:

english

File:

PDF, 660 KB

english, 2019

9

[Advances in Intelligent Systems and Computing] Practical Applications of Computational Biology and Bioinformatics, 12th International Conference Volume 803 || Methods of Creating Knowledge Graph by Linking Biological Databases

Fdez-Riverola, Florentino, Mohamad, Mohd Saberi, Rocha, Miguel, De Paz, Juan F., González, Pascual

Year:

2019

Language:

english

File:

PDF, 305 KB

english, 2019

10

[Advances in Intelligent Systems and Computing] Practical Applications of Computational Biology and Bioinformatics, 13th International Conference Volume 1005 || Artificial Intelligence in Biological Activity Prediction

Fdez-Riverola, Florentino, Rocha, Miguel, Mohamad, Mohd Saberi, Zaki, Nazar, Castellanos-Garzón, José A.

Year:

2020

Language:

english

File:

PDF, 208 KB

english, 2020

11

A JAVA application framework for scientific software development

F. Fdez-Riverola, D. Glez-Peña, H. López-Fernández, M. Reboiro-Jato, J.R. Méndez

Journal:

Software: Practice and Experience

Year:

2012

Language:

english

File:

PDF, 1.03 MB

english, 2012

12

Sequential depletion coupled to C18 sequential extraction as a rapid tool for human serum multiple profiling

Fernández-Costa, Carolina, Reboiro-Jato, Miguel, Fdez-Riverola, Florentino, Ruiz-Romero, Cristina, Blanco, Francisco J., Capelo-Martínez, José-Luis

Journal:

Year:

2014

Language:

english

File:

PDF, 2.03 MB

english, 2014

13

Assuring the authenticity of northwest Spain white wine varieties using machine learning techniques

Gómez-Meire, S., Campos, C., Falqué, E., Díaz, F., Fdez-Riverola, F.

Journal:

Food Research International

Year:

2014

Language:

english

File:

PDF, 2.45 MB

english, 2014

14

Using new scheduling heuristics based on resource consumption information for increasing throughput on rule-based spam filtering systems

Ruano-Ordás, David, Fdez-Glez, Jorge, Fdez-Riverola, Florentino, Méndez, José Ramón

Journal:

Software: Practice and Experience

Year:

2016

Language:

english

File:

PDF, 1.66 MB

english, 2016

15

RuleSIM: a toolkit for simulating the operation and improving throughput of rule-based spam filters

Ruano-Ordás, David, Fdez-Glez, Jorge, Fdez-Riverola, Florentino, Basto Fernandes, Vitor, Méndez, José Ramón

Journal:

Software: Practice and Experience

Year:

2016

Language:

english

File:

PDF, 4.16 MB

english, 2016

16

[Advances in Intelligent Systems and Computing] Practical Applications of Computational Biology and Bioinformatics, 12th International Conference Volume 803 || In Silico Predictions for Fucoxanthin Production by the Diatom Phaeodactylum Tricornutum

Fdez-Riverola, Florentino, Mohamad, Mohd Saberi, Rocha, Miguel, De Paz, Juan F., González, Pascual

Year:

2019

Language:

english

File:

PDF, 185 KB

english, 2019

17

[Advances in Intelligent Systems and Computing] Practical Applications of Computational Biology and Bioinformatics, 13th International Conference Volume 1005 ||

Fdez-Riverola, Florentino, Rocha, Miguel, Mohamad, Mohd Saberi, Zaki, Nazar, Castellanos-Garzón, José A.

Year:

2020

Language:

english

File:

PDF, 11.87 MB

english, 2020

18

[Advances in Intelligent Systems and Computing] Practical Applications of Computational Biology and Bioinformatics, 13th International Conference Volume 1005 || Troppo - A Python Framework for the Reconstruction of Context-Specific Metabolic Models

Fdez-Riverola, Florentino, Rocha, Miguel, Mohamad, Mohd Saberi, Zaki, Nazar, Castellanos-Garzón, José A.

Year:

2020

Language:

english

File:

PDF, 307 KB

english, 2020

19

A novel 18O inverse labeling-based workflow for accurate bottom-up mass spectrometry quantification of proteins separated by gel electrophoresis

Hugo M. Santos, Daniel Glez-Peña, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Mário S. Diniz, Carlos Lodeiro, José-Luis Capelo-Martínez

Journal:

ELECTROPHORESIS

Year:

2010

Language:

english

File:

PDF, 429 KB

english, 2010

20

BioDR: Semantic indexing networks for biomedical document retrieval

Anália Lourenço, Rafael Carreira, Daniel Glez-Peña, José R. Méndez, Sónia Carneiro, Luis M. Rocha, Fernando Díaz, Eugénio C. Ferreira, Isabel Rocha, Florentino Fdez-Riverola, Miguel Rocha

Journal:

Expert Systems with Applications

Year:

2010

Language:

english

File:

PDF, 1.11 MB

english, 2010

21

Applying lazy learning algorithms to tackle concept drift in spam filtering

F. Fdez-Riverola, E.L. Iglesias, F. Díaz, J.R. Méndez, J.M. Corchado

Journal:

Expert Systems with Applications

Year:

2007

Language:

english

File:

PDF, 1.44 MB

english, 2007

22

Managing irrelevant knowledge in CBR models for unsolicited e-mail classification

J.R. Méndez, D. Glez-Peña, F. Fdez-Riverola, F. Díaz, J.M. Corchado

Journal:

Expert Systems with Applications

Year:

2009

Language:

english

File:

PDF, 1.34 MB

english, 2009

23

Using inductive learning to assess compound feed production in cooperative poultry farms

M. Reboiro-Jato, J. Glez-Dopazo, D. Glez, R. Laza, J.F. Gálvez, R. Pavón, D. Glez-Peña, F. Fdez-Riverola

Journal:

Expert Systems with Applications

Year:

2011

Language:

english

File:

PDF, 1.97 MB

english, 2011

24

CBR based system for forecasting red tides

Florentino Fdez-Riverola, Juan M Corchado

Journal:

Knowledge-Based Systems

Year:

2003

Language:

english

File:

PDF, 166 KB

english, 2003

25

PileLine: a toolbox to handle genome position information in next-generation sequencing studies

Daniel Glez-Peña, Gonzalo Gómez-López, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David G Pisano

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 510 KB

english, 2011

26

gene-CBR: A CASE-BASED REASONIG TOOL FOR CANCER DIAGNOSIS USING MICROARRAY DATA SETS

Fernando Díaz, Florentino Fdez-Riverola, Juan M. Corchado

Journal:

Computational Intelligence

Year:

2006

Language:

english

File:

PDF, 344 KB

english, 2006

27

ALTER: program-oriented conversion of DNA and protein alignments

Glez-Pena, D., Gomez-Blanco, D., Reboiro-Jato, M., Fdez-Riverola, F., Posada, D.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 4.73 MB

english, 2010

28

[Advances in Intelligent and Soft Computing] 5th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2011) Volume 93 || A Systematic Modeling Approach to Elucidate the Triggering of the Stringent Response in Recombinant E. coli Systems

Rocha, Miguel P., Rodríguez, Juan M. Corchado, Fdez-Riverola, Florentino, Valencia, Alfonso

Year:

2011

Language:

english

File:

PDF, 257 KB

english, 2011

29

Wirebrush4SPAM: a novel framework for improving efficiency on spam filtering services

N. Pérez-Díaz, D. Ruano-Ordas, F. Fdez-Riverola, J.R. Méndez

Journal:

Software: Practice and Experience

Year:

2012

Language:

english

File:

PDF, 1.60 MB

english, 2012

30

AIBench: A rapid application development framework for translational research in biomedicine

D. Glez-Peña, M. Reboiro-Jato, P. Maia, M. Rocha, F. Díaz, F. Fdez-Riverola

Journal:

Computer Methods and Programs in Biomedicine

Year:

2010

Language:

english

File:

PDF, 2.10 MB

english, 2010

31

SpamHunting: An instance-based reasoning system for spam labelling and filtering

F. Fdez-Riverola, E.L. Iglesias, F. Díaz, J.R. Méndez, J.M. Corchado

Journal:

Decision Support Systems

Year:

2007

Language:

english

File:

PDF, 492 KB

english, 2007

32

@Note: A workbench for Biomedical Text Mining

Anália Lourenço, Rafael Carreira, Sónia Carneiro, Paulo Maia, Daniel Glez-Peña, Florentino Fdez-Riverola, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 1.06 MB

english, 2009

33

geneCBR: a translational tool for multiple-microarray analysis and integrative information retrieval for aiding diagnosis in cancer research

Daniel Glez-Peña, Fernando Díaz, Jesús M Hernández, Juan M Corchado, Florentino Fdez-Riverola

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.55 MB

english, 2009

34

DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data

Daniel Glez-Peña, Rodrigo Álvarez, Fernando Díaz, Florentino Fdez-Riverola

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.06 MB

english, 2009

35

SDAI: An integral evaluation methodology for content-based spam filtering models

Noemí Pérez-Díaz, David Ruano-Ordás, Florentino Fdez-Riverola, José R. Méndez

Journal:

Expert Systems with Applications

Year:

2012

Language:

english

File:

PDF, 1.36 MB

english, 2012

36

Indirect ultrasonication for protein quantification and peptide mass mapping through mass spectrometry-based techniques

R.J. Carreira, C. Lodeiro, M. Reboiro-Jato, D. Glez-Peña, F. Fdez-Riverola, J.L. Capelo

Journal:

Year:

2010

Language:

english

File:

PDF, 300 KB

english, 2010

37

Decision peptide-driven: A free software tool for accurate protein quantification using gel electrophoresis and matrix assisted laser desorption ionization time of flight mass spectrometry

Hugo M. Santos, Miguel Reboiro-Jato, Daniel Glez-Peña, J.D. Nunes-Miranda, Florentino Fdez-Riverola, R. Carvallo, J.L. Capelo

Journal:

Year:

2010

Language:

english

File:

PDF, 949 KB

english, 2010

38

Direct matrix assisted laser desorption ionization mass spectrometry-based analysis of wine as a powerful tool for classification purposes

J.D. Nunes-Miranda, Hugo M. Santos, Miguel Reboiro-Jato, Florentino Fdez-Riverola, G. Igrejas, Carlos Lodeiro, J.L. Capelo

Journal:

Year:

2012

Language:

english

File:

PDF, 491 KB

english, 2012

39

[Advances in Intelligent and Soft Computing] 6th International Conference on Practical Applications of Computational Biology & Bioinformatics Volume 154 || Comparing Bowtie and BWA to Align Short Reads from a RNA-Seq Experiment

Rocha, Miguel P., Luscombe, Nicholas, Fdez-Riverola, Florentino, Rodríguez, Juan M. Corchado

Year:

2012

Language:

english

File:

PDF, 231 KB

english, 2012

40

Rough sets for spam filtering: Selecting appropriate decision rules for boundary e-mail classification

Pérez-Díaz, Noemí, Ruano-Ordás, David, Méndez, José R., Gálvez, Juan F., Fdez-Riverola, Florentino

Journal:

Applied Soft Computing

Year:

2012

Language:

english

File:

PDF, 953 KB

english, 2012

41

A new approach to bacterial colony morphotyping by matrix-assisted laser desorption ionization time of flight-based mass spectrometry

Sousa, Ana Margarida, Nunes-Miranda, J.D., Reboiro-Jato, Miguel, Fdez-Riverola, Florentino, Lourenço, Anália, Pereira, Maria Olívia, Capelo, J.L.

Journal:

Year:

2013

Language:

english

File:

PDF, 810 KB

english, 2013

42

genEnsemble: A new model for the combination of classifiers and integration of biological knowledge applied to genomic data

Reboiro-Jato, Miguel, Laza, Rosalía, López-Fernández, Hugo, Glez-Peña, Daniel, Díaz, Fernando, Fdez-Riverola, Florentino

Journal:

Expert Systems with Applications

Year:

2013

Language:

english

File:

PDF, 2.50 MB

english, 2013

43

[Advances in Intelligent and Soft Computing] 6th International Conference on Practical Applications of Computational Biology & Bioinformatics Volume 154 || Parameter Influence in Genetic Algorithm Optimization of Support Vector Machines

Rocha, Miguel P., Luscombe, Nicholas, Fdez-Riverola, Florentino, Rodríguez, Juan M. Corchado

Year:

2012

Language:

english

File:

PDF, 215 KB

english, 2012

44

[Advances in Intelligent and Soft Computing] 5th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2011) Volume 93 || Tracking B Cells from Two-Photon Microscopy Images Using Sequential Monte Carlo

Rocha, Miguel P., Rodríguez, Juan M. Corchado, Fdez-Riverola, Florentino, Valencia, Alfonso

Year:

2011

Language:

english

File:

PDF, 279 KB

english, 2011

45

BioAnnote: A software platform for annotating biomedical documents with application in medical learning environments

López-Fernández, H., Reboiro-Jato, M., Glez-Peña, D., Aparicio, F., Gachet, D., Buenaga, M., Fdez-Riverola, F.

Journal:

Computer Methods and Programs in Biomedicine

Year:

2013

Language:

english

File:

PDF, 2.38 MB

english, 2013

46

A hybrid artificial intelligence model for river flow forecasting

Toro, Carlos H. Fajardo, Gómez Meire, Silvana, Gálvez, Juan F., Fdez-Riverola, Florentino

Journal:

Applied Soft Computing

Year:

2013

Language:

english

File:

PDF, 2.22 MB

english, 2013

47

[Advances in Intelligent Systems and Computing] 7th International Conference on Practical Applications of Computational Biology & Bioinformatics Volume 222 ||

Mohamad, Mohd Saberi, Nanni, Loris, Rocha, Miguel P., Fdez-Riverola, Florentino

Year:

2013

Language:

english

File:

PDF, 5.49 MB

english, 2013

48

[Advances in Intelligent Systems and Computing] 7th International Conference on Practical Applications of Computational Biology & Bioinformatics Volume 222 || A Workflow for the Application of Biclustering to Mass Spectrometry Data

Mohamad, Mohd Saberi, Nanni, Loris, Rocha, Miguel P., Fdez-Riverola, Florentino

Year:

2013

Language:

english

File:

PDF, 322 KB

english, 2013

49

[Advances in Intelligent and Soft Computing] 5th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2011) Volume 93 || Compressing the Human Genome Using Exclusively Markov Models

Rocha, Miguel P., Rodríguez, Juan M. Corchado, Fdez-Riverola, Florentino, Valencia, Alfonso

Year:

2011

Language:

english

File:

PDF, 298 KB

english, 2011

50

[Advances in Intelligent Systems and Computing] 7th International Conference on Practical Applications of Computational Biology & Bioinformatics Volume 222 || Analysis of Word Symmetries in Human Genomes Using Next-Generation Sequencing Data

Mohamad, Mohd Saberi, Nanni, Loris, Rocha, Miguel P., Fdez-Riverola, Florentino

Year:

2013

Language:

english

File:

PDF, 237 KB

english, 2013

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