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101

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

Poretsky, Rachel, Rodriguez-R, Luis M., Luo, Chengwei, Tsementzi, Despina, Konstantinidis, Konstantinos T., Rodriguez-Valera, Francisco

Journal:

Year:

2014

Language:

english

File:

PDF, 665 KB

english, 2014

102

Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist’s Perspective - Not Only Size Matters!

Vollmers, John, Wiegand, Sandra, Kaster, Anne-Kristin, Rodriguez-Valera, Francisco

Journal:

Year:

2017

Language:

english

File:

PDF, 4.97 MB

english, 2017

103

Diurnally Entrained Anticipatory Behavior in Archaea

Whitehead, Kenia, Pan, Min, Masumura, Ken-ichi, Bonneau, Richard, Baliga, Nitin S., Rodriguez-Valera, Francisco

Journal:

Year:

2009

Language:

english

File:

PDF, 655 KB

english, 2009

104

Conserved Amino Acid Sequence Features in the α Subunits of MoFe, VFe, and FeFe Nitrogenases

Glazer, Alexander N., Kechris, Katerina J., Rodriguez-Valera, Francisco

Journal:

Year:

2009

Language:

english

File:

PDF, 275 KB

english, 2009

105

The Evolution of a Capacity to Build Supra-Cellular Ropes Enabled Filamentous Cyanobacteria to Colonize Highly Erodible Substrates

Garcia-Pichel, Ferran, Wojciechowski, Martin F., Rodriguez-Valera, Francisco

Journal:

Year:

2009

Language:

english

File:

PDF, 332 KB

english, 2009

106

Phylogenetic and Evolutionary Patterns in Microbial Carotenoid Biosynthesis Are Revealed by Comparative Genomics

Klassen, Jonathan L., Rodriguez-Valera, Francisco

Journal:

Year:

2010

Language:

english

File:

PDF, 2.81 MB

english, 2010

107

Metagenomic Comparison of Two Thiomicrospira Lineages Inhabiting Contrasting Deep-Sea Hydrothermal Environments

Brazelton, William J., Baross, John A., Rodriguez-Valera, Francisco

Journal:

Year:

2010

Language:

english

File:

PDF, 747 KB

english, 2010

108

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

Schmieder, Robert, Edwards, Robert, Rodriguez-Valera, Francisco

Journal:

Year:

2011

Language:

english

File:

PDF, 1.20 MB

english, 2011

109

Pyrosequencing of Antibiotic-Contaminated River Sediments Reveals High Levels of Resistance and Gene Transfer Elements

Kristiansson, Erik, Fick, Jerker, Janzon, Anders, Grabic, Roman, Rutgersson, Carolin, Weijdegård, Birgitta, Söderström, Hanna, Larsson, D. G. Joakim, Rodriguez-Valera, Francisco

Journal:

Year:

2011

Language:

english

File:

PDF, 288 KB

english, 2011

110

Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River

Ghai, Rohit, Rodŕíguez-Valera, Francisco, McMahon, Katherine D., Toyama, Danyelle, Rinke, Raquel, Cristina Souza de Oliveira, Tereza, Wagner Garcia, José, Pellon de Miranda, Fernando, Henrique-Silva,

Journal:

Year:

2011

Language:

english

File:

PDF, 654 KB

english, 2011

111

High Diversity of the Saliva Microbiome in Batwa Pygmies

Nasidze, Ivan, Li, Jing, Schroeder, Roland, Creasey, Jean L., Li, Mingkun, Stoneking, Mark, Rodríguez-Valera, Francisco

Journal:

Year:

2011

Language:

english

File:

PDF, 895 KB

english, 2011

112

Analysis of the Global Ocean Sampling (GOS) Project for Trends in Iron Uptake by Surface Ocean Microbes

Toulza, Eve, Tagliabue, Alessandro, Blain, Stéphane, Piganeau, Gwenael, Rodriguez-Valera, Francisco

Journal:

Year:

2012

Language:

english

File:

PDF, 1.09 MB

english, 2012

113

Experimental Incubations Elicit Profound Changes in Community Transcription in OMZ Bacterioplankton

Stewart, Frank J., Dalsgaard, Tage, Young, Curtis R., Thamdrup, Bo, Revsbech, Niels Peter, Ulloa, Osvaldo, Canfield, Don E., DeLong, Edward F., Rodriguez-Valera, Francisco

Journal:

Year:

2012

Language:

english

File:

PDF, 1.21 MB

english, 2012

114

Ribosomal Multi-Operon Diversity: An Original Perspective on the Genus Aeromonas

Roger, Frédéric, Lamy, Brigitte, Jumas-Bilak, Estelle, Kodjo, Angeli, Marchandin, Hélène, Rodriguez-Valera, Francisco

Journal:

Year:

2012

Language:

english

File:

PDF, 584 KB

english, 2012

115

Combined Analyses of the ITS Loci and the Corresponding 16S rRNA Genes Reveal High Micro- and Macrodiversity of SAR11 Populations in the Red Sea

Ngugi, David Kamanda, Stingl, Ulrich, Rodriguez-Valera, Francisco

Journal:

Year:

2012

Language:

english

File:

PDF, 969 KB

english, 2012

116

Assembly of a Marine Viral Metagenome after Physical Fractionation

Brum, Jennifer R., Culley, Alexander I., Steward, Grieg F., Rodriguez-Valera, Francisco

Journal:

Year:

2013

Language:

english

File:

PDF, 3.37 MB

english, 2013

117

Microbial Life in a Fjord: Metagenomic Analysis of a Microbial Mat in Chilean Patagonia

Ugalde, Juan A., Gallardo, Maria J., Belmar, Camila, Muñoz, Práxedes, Ruiz-Tagle, Nathaly, Ferrada-Fuentes, Sandra, Espinoza, Carola, Allen, Eric E., Gallardo, Victor A., Rodriguez-Valera, Francisco

Journal:

Year:

2013

Language:

english

File:

PDF, 1.42 MB

english, 2013

118

Genomes of Two New Ammonia-Oxidizing Archaea Enriched from Deep Marine Sediments

Park, Soo-Je, Ghai, Rohit, Martín-Cuadrado, Ana-Belén, Rodríguez-Valera, Francisco, Chung, Won-Hyong, Kwon, KaeKyoung, Lee, Jung-Hyun, Madsen, Eugene L., Rhee, Sung-Keun, Brochier-Armanet, Celine

Journal:

Year:

2014

Language:

english

File:

PDF, 499 KB

english, 2014

119

Substrate Use of Pseudovibrio sp. Growing in Ultra-Oligotrophic Seawater

Schwedt, Anne, Seidel, Michael, Dittmar, Thorsten, Simon, Meinhard, Bondarev, Vladimir, Romano, Stefano, Lavik, Gaute, Schulz-Vogt, Heide N., Rodriguez-Valera, Francisco

Journal:

Year:

2015

Language:

english

File:

PDF, 931 KB

english, 2015

120

Methanesulfonate (MSA) Catabolic Genes from Marine and Estuarine Bacteria

Henriques, Ana C., De Marco, Paolo, Rodriguez-Valera, Francisco

Journal:

Year:

2015

Language:

english

File:

PDF, 1.12 MB

english, 2015

121

Exploration of Human Salivary Microbiomes—Insights into the Novel Characteristics of Microbial Community Structure in Caries and Caries-Free Subjects

Zhou, Jianye, Jiang, Nan, Wang, Shaoguo, Hu, Xiaopan, Jiao, Kangli, He, Xiangyi, Li, Zhiqiang, Wang, Jizeng, Rodriguez-Valera, Francisco

Journal:

Year:

2016

Language:

english

File:

PDF, 1.30 MB

english, 2016

122

Isolation and characterization of a N4-like lytic bacteriophage infecting Vibrio splendidus, a pathogen of fish and bivalves

Katharios, Pantelis, Kalatzis, Panos G., Kokkari, Constantina, Sarropoulou, Elena, Middelboe, Mathias, Rodriguez-Valera, Francisco

Journal:

Year:

2017

Language:

english

File:

PDF, 5.42 MB

english, 2017

123

Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment

Haro-Moreno, Jose M., López-Pérez, Mario, de la Torre, José R., Picazo, Antonio, Camacho, Antonio, Rodriguez-Valera, Francisco

Journal:

Year:

2018

Language:

english

File:

PDF, 2.52 MB

english, 2018

124

Evidence for metaviromic islands in marine phages

Mizuno, Carolina Megumi, Ghai, Rohit, Rodriguez-Valera, Francisco

Journal:

Frontiers in Microbiology

Year:

2014

Language:

english

File:

PDF, 2.87 MB

english, 2014

125

Marine Group II Archaea, potentially important players in the global ocean carbon cycle

Zhang, Chuanlun L., Xie, Wei, Martin-Cuadrado, Ana-Belen, Rodriguez-Valera, Francisco

Journal:

Frontiers in Microbiology

Year:

2015

Language:

english

File:

PDF, 1.72 MB

english, 2015

126

Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines

Vavourakis, Charlotte D., Ghai, Rohit, Rodriguez-Valera, Francisco, Sorokin, Dimitry Y., Tringe, Susannah G., Hugenholtz, Philip, Muyzer, Gerard

Journal:

Frontiers in Microbiology

Year:

2016

Language:

english

File:

PDF, 2.26 MB

english, 2016

127

Not All Particles Are Equal: The Selective Enrichment of Particle-Associated Bacteria from the Mediterranean Sea

López-Pérez, Mario, Kimes, Nikole E., Haro-Moreno, Jose M., Rodriguez-Valera, Francisco

Journal:

Frontiers in Microbiology

Year:

2016

Language:

english

File:

PDF, 3.54 MB

english, 2016

128

Novel Synechococcus Genomes Reconstructed from Freshwater Reservoirs

Cabello-Yeves, Pedro J., Haro-Moreno, Jose M., Martin-Cuadrado, Ana-Belen, Ghai, Rohit, Picazo, Antonio, Camacho, Antonio, Rodriguez-Valera, Francisco

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 3.37 MB

english, 2017

129

Reconstruction of Diverse Verrucomicrobial Genomes from Metagenome Datasets of Freshwater Reservoirs

Cabello-Yeves, Pedro J., Ghai, Rohit, Mehrshad, Maliheh, Picazo, Antonio, Camacho, Antonio, Rodriguez-Valera, Francisco

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 7.87 MB

english, 2017

130

Ecological and genomic features of two widespread freshwater picocyanobacteria

Cabello-Yeves, Pedro J., Picazo, Antonio, Camacho, Antonio, Callieri, Cristiana, Rosselli, Riccardo, Roda-Garcia, Juan J., Coutinho, Felipe H., Rodriguez-Valera, Francisco

Journal:

Environmental Microbiology

Year:

2018

Language:

english

File:

PDF, 3.02 MB

english, 2018

131

Single-cell genomics uncover Pelagibacter as the putative host of the extremely abundant uncultured 37-F6 viral population in the ocean

Martinez-Hernandez, Francisco, Fornas, Òscar, Lluesma Gomez, Monica, Garcia-Heredia, Inmaculada, Maestre-Carballa, Lucia, López-Pérez, Mario, Haro-Moreno, Jose M., Rodriguez-Valera, Francisco, Martine

Journal:

The ISME Journal

Year:

2018

Language:

english

File:

PDF, 1.02 MB

english, 2018

132

Novel Caudovirales associated with Marine Group I Thaumarchaeota assembled from metagenomes

López-Pérez, Mario, Haro-Moreno, Jose M., de la Torre, José R., Rodriguez-Valera, Francisco

Journal:

Environmental Microbiology

Year:

2018

Language:

english

File:

PDF, 1.63 MB

english, 2018

133

Spindle-shaped viruses infect marine ammonia-oxidizing thaumarchaea

Kim, Jong-Geol, Kim, So-Jeong, Cvirkaite-Krupovic, Virginija, Yu, Woon-Jong, Gwak, Joo-Han, López-Pérez, Mario, Rodriguez-Valera, Francisco, Krupovic, Mart, Cho, Jang-Cheon, Rhee, Sung-Keun

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

Language:

english

File:

PDF, 981 KB

english, 2019

134

Spindle-shaped viruses infect marine ammonia-oxidizing thaumarchaea

Kim, Jong-Geol, Kim, So-Jeong, Cvirkaite-Krupovic, Virginija, Yu, Woon-Jong, Gwak, Joo-Han, López-Pérez, Mario, Rodriguez-Valera, Francisco, Krupovic, Mart, Cho, Jang-Cheon, Rhee, Sung-Keun

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

File:

PDF, 981 KB

2019

135

Marine-freshwater prokaryotic transitions require extensive changes in the predicted proteome

Cabello-Yeves, Pedro J., Rodriguez-Valera, Francisco

Journal:

Year:

2019

Language:

english

File:

PDF, 3.90 MB

english, 2019

136

Explaining microbial population genomics through phage predation

Rodriguez-Valera, Francisco, Martín-Cuadrado, Ana-Belén, Rodriguez-Brito, Beltrán, Pasic, Lejla, Thingstad, T. Frede, Rohwer, Forest, Mira, Alex

Journal:

Bioentrepreneur

Year:

2009

Language:

english

File:

PDF, 6.01 MB

english, 2009

137

Explaining microbial population genomics through phage predation

Rodriguez-Valera, Francisco, Martín-Cuadrado, Ana-Belén, Rodriguez-Brito, Beltrán, Pasic, Lejla, Thingstad, T. Frede, Rohwer, Forest, Mira, Alex

Journal:

Bioentrepreneur

Year:

2009

File:

PDF, 6.01 MB

2009

138

Properties Of The Plasma Membrane Atpases Of The Halophilic Archaebacteria Haloferax Mediterranei And Haloferax Volcanii

Dane, Michaela, Steinert, Kerstin, Esser, Kordula, Bickel-Sandkötter, Susanne, Rodriguez-Valera, Francisco

Journal:

Zeitschrift für Naturforschung C

Year:

1992

Language:

english

File:

PDF, 9.39 MB

english, 1992

139

Properties Of The Plasma Membrane Atpases Of The Halophilic Archaebacteria Haloferax Mediterranei And Haloferax Volcanii

Dane, Michaela, Steinert, Kerstin, Esser, Kordula, Bickel-Sandkötter, Susanne, Rodriguez-Valera, Francisco

Journal:

Zeitschrift für Naturforschung C

Year:

1992

File:

PDF, 9.39 MB

1992

140

Prokaryotic Population Dynamics and Viral Predation in a Marine Succession Experiment Using Metagenomics

Haro-Moreno, Jose M., Rodriguez-Valera, Francisco, López-Pérez, Mario

Journal:

Frontiers in Microbiology

Year:

2019

File:

PDF, 5.94 MB

2019

141

Metagenome Mining Reveals Hidden Genomic Diversity of Pelagimyophages in Aquatic Environments

Zaragoza-Solas, Asier, Rodriguez-Valera, Francisco, LÃ³pez-PÃ©rez, Mario, Petersen, Jillian

Journal:

Year:

2020

File:

PDF, 3.43 MB

2020

142

Microorganisms of Lake Baikalâthe deepest and most ancient lake on Earth

Zemskaya, Tamara I., Cabello-Yeves, Pedro J., Pavlova, Olga N., Rodriguez-Valera, Francisco

Journal:

Applied Microbiology and Biotechnology

Year:

2020

File:

PDF, 3.56 MB

2020

143

Alteromonas Myovirus V22 Represents a New Genus of Marine Bacteriophages Requiring a Tail Fiber Chaperone for Host Recognition

Gonzalez-Serrano, Rafael, Dunne, Matthew, Rosselli, Riccardo, Martin-Cuadrado, Ana-Belen, Grosboillot, Virginie, Zinsli, LÃ©a V., Roda-Garcia, Juan J., Loessner, Martin J., Rodriguez-Valera, Francisco

Journal:

Year:

2020

File:

PDF, 3.57 MB

2020