Faeder, James R.: search on Z-Library

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51

Detailed qualitative dynamic knowledge representation using a BioNetGen model of TLR-4 signaling and preconditioning

Gary C. An, James R. Faeder

Journal:

Mathematical Biosciences

Year:

2009

Language:

english

File:

PDF, 1.01 MB

english, 2009

52

Unified Model of Synaptic Transmission

Kaya, Cihan, Liu, Bing, Faeder, James R., Bahar, Ivet

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 40 KB

english, 2015

53

Translational Systems Biology: Introduction of an Engineering Approach to the Pathophysiology of the Burn Patient

An, Gary, Faeder, James, Vodovotz, Yoram

Journal:

Journal of Burn Care & Research

Year:

2008

Language:

english

File:

PDF, 196 KB

english, 2008

54

Modeling the activation of the alternative complement pathway and its effects on hemolysis in health and disease

Caruso, Antonello, Vollmer, Jannik, Machacek, Matthias, Kortvely, Elod, Faeder, James R.

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 2.35 MB

2020

55

Simulations of ICl − (CO 2 ) n Photodissociation: Effects of Structure, Excited State Charge Flow, and Solvent Dynamics †

Faeder, James R., Parson, Robert

Journal:

Journal of Physical Chemistry A

Year:

2010

Language:

english

File:

PDF, 1.14 MB

english, 2010

56

The mitogen-activated protein kinome fromAnopheles gambiae: identification, phylogeny and functional characterization of the ERK, JNK and p38 MAP kinases

Ashley A Horton, Bo Wang, Lauren Camp, Mark S Price, Arora Arshi, Mate Nagy, Steven A Nadler, James R Faeder, Shirley Luckhart

Journal:

Year:

2011

Language:

english

File:

PDF, 724 KB

english, 2011

57

Depicting signaling cascades

Blinov, Michael L., Yang, Jin, Faeder, James R., Hlavacek, William S.

Journal:

Nature Biotechnology

Year:

2006

Language:

english

File:

PDF, 103 KB

english, 2006

58

Solvation Dynamics in Reverse Micelles: The Role of Headgroup−Solute Interactions †

Faeder, James, Ladanyi, Branka M.

Journal:

Journal of Physical Chemistry B

Year:

2005

Language:

english

File:

PDF, 271 KB

english, 2005

59

On the Origins of Intrinsically Disordered Proteins

Liu, Jintao, James, Faeder R., Camacho, Carlos J.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 37 KB

english, 2010

60

[IEEE 2018 26th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP) - Cambridge (2018.3.21-2018.3.23)] 2018 26th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP) - Evaluation of Parallel Tempering to Accelerate Bayesian Parameter Estimation in Systems Biology

Gupta, Sanjana, Hainsworth, Liam, Hogg, Justin, Lee, Robin, Faeder, James

Year:

2018

Language:

english

File:

PDF, 598 KB

english, 2018

61

Spin–orbit coupling in I·CO2 and I·OCS van der Waals complexes: beyond the pseudo-diatomic approximation

Andrei Sanov, James Faeder, Robert Parson, W.Carl Lineberger

Journal:

Chemical Physics Letters

Year:

1999

Language:

english

File:

PDF, 301 KB

english, 1999

62

Modeling Multivalent Ligand-Receptor Interactions with Steric Constraints on Configurations of Cell-Surface Receptor Aggregates

Monine, Michael I., Posner, Richard G., Savage, Paul B., Faeder, James R., Hlavacek, William S.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 451 KB

english, 2010

63

Solvation Dynamics in Aqueous Reverse Micelles: A Computer Simulation Study

Faeder, James, Ladanyi, Branka M.

Journal:

Journal of Physical Chemistry B

Year:

2001

Language:

english

File:

PDF, 149 KB

english, 2001

64

Demystifying the cytokine network: Mathematical models point the way

Morel, Penelope A., Lee, Robin E.C., Faeder, James R.

Journal:

Year:

2016

Language:

english

File:

PDF, 711 KB

english, 2016

65

Effect of Spatial Complexity on Dopaminergic Signaling Revealed from Multiscale Simulations

Kaya, Cihan, Cheng, Mary H., Block, Ethan R., Sorkin, Alexander, Faeder, James R., Bahar, Ivet

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 45 KB

english, 2017

66

The role of intracellular interactions in the collective polarization of tissues and its interplay with cellular geometry

Shadkhoo, Shahriar, Mani, Madhav, Faeder, James R.

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 6.39 MB

2019

67

The Fifth Annual q-bio Conference on Cellular Information Processing

Nemenman, Ilya, Gnanakaran, S, Hlavacek, William S, Jiang, Yi, Munsky, Brian, Wall, Michael E, Faeder, James R

Journal:

Physical Biology

Year:

2012

Language:

english

File:

PDF, 418 KB

english, 2012

68

Reductionism Is Dead: Long Live Reductionism! Systems Modeling Needs Reductionist Experiments

Faeder, James R., Morel, Penelope A.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 407 KB

english, 2016

69

[IEEE 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Shenzhen, China (2016.12.15-2016.12.18)] 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Parameter estimation of rule-based models using statistical model checking

Liu, Bing, Faeder, James R.

Year:

2016

Language:

english

File:

PDF, 281 KB

english, 2016

70

Toward a comprehensive language for biological systems

Journal:

Year:

2011

Language:

english

File:

PDF, 132 KB

english, 2011

71

Efficient modeling, simulation and coarse-graining of biological complexity with NFsim

Sneddon, Michael W, Faeder, James R, Emonet, Thierry

Journal:

Year:

2010

Language:

english

File:

PDF, 959 KB

english, 2010

72

MOSBIE: a tool for comparison and analysis of rule-based biochemical models

E, John, Harris, Leonard A, Tapia, Jose-Juan, Faeder, James R, Marai, G

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 2.36 MB

english, 2014

73

[IEEE 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Shenzhen, China (2016.12.15-2016.12.18)] 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Energy-based modeling in BioNetGen

Sekar, John A.P., Hogg, Justin S., Faeder, James R.

Year:

2016

Language:

english

File:

PDF, 384 KB

english, 2016

74

Structural organization and energy storage in crosslinked actin assemblies

Ma, Rui, Berro, Julien, Faeder, James R.

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 21.85 MB

english, 2018

75

Molecular Dynamics Simulations of the Interior of Aqueous Reverse Micelles: A Comparison between Sodium and Potassium Counterions

Faeder, James, Albert, Mark V., Ladanyi, Branka M.

Journal:

Year:

2003

Language:

english

File:

PDF, 238 KB

english, 2003

76

NF-κB Dynamics Discriminate between TNF Doses in Single Cells

Zhang, Qiuhong, Gupta, Sanjana, Schipper, David L., Kowalczyk, Gabriel J., Mancini, Allison E., Faeder, James R., Lee, Robin E.C.

Journal:

Year:

2017

Language:

english

File:

PDF, 9.12 MB

english, 2017

77

Shift from stochastic to spatially-ordered expression of serine-glycine synthesis enzymes in 3D microtumors

Singh, Manjulata, Warita, Katsuhiko, Warita, Tomoko, Faeder, James R., Lee, Robin E. C., Sant, Shilpa, Oltvai, Zoltán N.

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 7.45 MB

english, 2018

78

Rule-based modeling of signal transduction

James Faeder, Michael Monine, Ambarish Nag, Byron Goldstein, William Hlavacek

Journal:

Journal of Critical Care

Year:

2007

Language:

english

File:

PDF, 86 KB

english, 2007

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