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1

Selection of unique Escherichia coli clones by random amplified polymorphic DNA (RAPD): Evaluation by whole genome sequencing

Nielsen, Karen L., Godfrey, Paul A., Stegger, Marc, Andersen, Paal S., Feldgarden, Michael, Frimodt-Møller, Niels

Journal:

Journal of Microbiological Methods

Year:

2014

Language:

english

File:

PDF, 512 KB

english, 2014

2

Rapid proliferation of historecognition alleles in populations of a colonial ascidian

Philip O. Yund, Michael Feldgarden

Journal:

Journal of Experimental Zoology Part A Ecological Genetics and Physiology

Year:

1992

Language:

english

File:

PDF, 1016 KB

english, 1992

3

Haplotype Diversity in “Source-Sink” Dynamics ofEscherichia coliUrovirulence

Sujay Chattopadhyay, Michael Feldgarden, Scott J. Weissman, Daniel E. Dykhuizen, Gerald van Belle, Evgeni V. Sokurenko

Journal:

Journal of Molecular Evolution

Year:

2007

Language:

english

File:

PDF, 264 KB

english, 2007

4

Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species

Luo, C., Walk, S. T., Gordon, D. M., Feldgarden, M., Tiedje, J. M., Konstantinidis, K. T.

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 673 KB

english, 2011

5

Environmental vs. Genetic Influence on the Intestinal Microbiome of Monozygotic and Dizygotic Twins

Joshua R. Korzenik, Christopher Smillie, Vikas Pabby, Francisco M. Camas, Diana M. Chien, Michael Feldgarden, Dirk Gevers, Doyle V. Ward, Athos Bousvaros, Curtis Huttenh, Bruce Birren, Eric Alm

Journal:

Gastroenterology

Year:

2011

Language:

english

File:

PDF, 113 KB

english, 2011

6

Evaluation of bacterial ribosomal RNA (rRNA) depletion methods for sequencing microbial community transcriptomes

Dawn Ciulla, Georgia Giannoukos, Ashlee Earl, Michael Feldgarden…

Journal:

Year:

2010

Language:

english

File:

PDF, 133 KB

english, 2010

7

Staphylococcal Enterotoxin P Predicts Bacteremia in Hospitalized Patients Colonized With Methicillin-Resistant Staphylococcus aureus

Calderwood, M. S., Desjardins, C. A., Sakoulas, G., Nicol, R., DuBois, A., Delaney, M. L., Kleinman, K., Cosimi, L. A., Feldgarden, M., Onderdonk, A. B., Birren, B. W., Platt, R., Huang, S. S.

Journal:

The Journal of Infectious Diseases

Year:

2014

Language:

english

File:

PDF, 449 KB

english, 2014

8

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

Haas, B. J., Gevers, D., Earl, A. M., Feldgarden, M., Ward, D. V., Giannoukos, G., Ciulla, D., Tabbaa, D., Highlander, S. K., Sodergren, E., Methe, B., DeSantis, T. Z., Petrosino, J. F., Knight, R., B

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 903 KB

english, 2011

9

A Catalog of Reference Genomes from the Human Microbiome

Nelson, K. E., Weinstock, G. M., Highlander, S. K., Worley, K. C., Creasy, H. H., Wortman, J. R., Rusch, D. B., Mitreva, M., Sodergren, E., Chinwalla, A. T., Feldgarden, M., Gevers, D., Haas, B. J., M

Journal:

Year:

2010

Language:

english

File:

PDF, 1.41 MB

english, 2010

10

Enzyme-Mediated Resistance to Antibiotics: Mechanisms, Dissemination, and Prospects for Inhibition.Edited by Robert A. Bonomo and Marcelo Tolmasky

Review by: Reviewed by Michael Feldgarden

Journal:

Quarterly Review of Biology

Year:

2008

Language:

english

File:

PDF, 275 KB

english, 2008

11

High Levels of Colicin Resistance in Escherichia coli

Michael Feldgarden and Margaret A. Riley

Journal:

Year:

1998

Language:

english

File:

PDF, 993 KB

english, 1998

12

The Phenotypic and Fitness Effects of Colicin Resistance in Escherichia coli K-12

Michael Feldgarden and Margaret A. Riley

Journal:

Year:

1999

Language:

english

File:

PDF, 1.22 MB

english, 1999

13

Allorecognition in Colonial Marine Invertebrates: Does Selection Favor Fusion with Kin or Fusion with Self?

Michael Feldgarden and Philip O. Yund

Journal:

Biological Bulletin

Year:

1992

Language:

english

File:

PDF, 221 KB

english, 1992

14

Identification of 50 Class D -Lactamases and 65 Acinetobacter-Derived Cephalosporinases in Acinetobacter spp.

Perichon, B., Goussard, S., Walewski, V., Krizova, L., Cerqueira, G., Murphy, C., Feldgarden, M., Wortman, J., Clermont, D., Nemec, A., Courvalin, P.

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2014

Language:

english

File:

PDF, 3.40 MB

english, 2014

15

Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics

Beres, S. B., Carroll, R. K., Shea, P. R., Sitkiewicz, I., Martinez-Gutierrez, J. C., Low, D. E., McGeer, A., Willey, B. M., Green, K., Tyrrell, G. J., Goldman, T. D., Feldgarden, M., Birren, B. W., F

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 816 KB

english, 2010

16

High-Quality Draft Genome Sequences of 28 Enterococcus sp. Isolates

Palmer, K. L., Carniol, K., Manson, J. M., Heiman, D., Shea, T., Young, S., Zeng, Q., Gevers, D., Feldgarden, M., Birren, B., Gilmore, M. S.

Journal:

Journal of Bacteriology

Year:

2010

Language:

english

File:

PDF, 42 KB

english, 2010

17

The Genomic Diversification of the Whole Acinetobacter Genus: Origins, Mechanisms, and Consequences

Touchon, M., Cury, J., Yoon, E.-J., Krizova, L., Cerqueira, G. C., Murphy, C., Feldgarden, M., Wortman, J., Clermont, D., Lambert, T., Grillot-Courvalin, C., Nemec, A., Courvalin, P., Rocha, E. P. C.

Journal:

Genome Biology and Evolution

Year:

2014

Language:

english

File:

PDF, 1.54 MB

english, 2014

18

Gradual evolution in bacteria: evidence from Bacillus systematics

Journal:

Year:

2003

Language:

english

File:

PDF, 148 KB

english, 2003

19

Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011

Grad, Y. H., Lipsitch, M., Feldgarden, M., Arachchi, H. M., Cerqueira, G. C., FitzGerald, M., Godfrey, P., Haas, B. J., Murphy, C. I., Russ, C., Sykes, S., Walker, B. J., Wortman, J. R., Young, S., Ze

Journal:

Proceedings of the National Academy of Sciences

Year:

2012

Language:

english

File:

PDF, 290 KB

english, 2012

20

Can phage defence maintain colicin plasmids in Escherichia coli

Feldgarden, M., Golden, S., Wilson, H., Riley, M. A.

Journal:

Microbiology (Society for General Microbiology)

Year:

1995

Language:

english

File:

PDF, 1.12 MB

english, 1995

21

Draft Genome Sequences of Staphylococcus aureus Sequence Type 34 (ST34) and ST42 Hybrids

Thomas, J. C., Godfrey, P. A., Feldgarden, M., Robinson, D. A.

Journal:

Journal of Bacteriology

Year:

2012

Language:

english

File:

PDF, 91 KB

english, 2012

22

Comparative Genomics of Enterococci: Variation in Enterococcus faecalis, Clade Structure in E. faecium, and Defining Characteristics of E. gallinarum and E. casseliflavus

Palmer, K. L., Godfrey, P., Griggs, A., Kos, V. N., Zucker, J., Desjardins, C., Cerqueira, G., Gevers, D., Walker, S., Wortman, J., Feldgarden, M., Haas, B., Birren, B., Gilmore, M. S.

Journal:

Year:

2012

Language:

english

File:

PDF, 5.62 MB

english, 2012

23

Candidate Targets of Balancing Selection in the Genome of Staphylococcus aureus

Thomas, J. C., Godfrey, P. A., Feldgarden, M., Robinson, D. A.

Journal:

Molecular Biology and Evolution

Year:

2012

Language:

english

File:

PDF, 326 KB

english, 2012

24

Comparative Genomics of Vancomycin-Resistant Staphylococcus aureus Strains and Their Positions within the Clade Most Commonly Associated with Methicillin-Resistant S. aureus Hospital-Acquired Infection in the United States

Kos, V. N., Desjardins, C. A., Griggs, A., Cerqueira, G., Van Tonder, A., Holden, M. T. G., Godfrey, P., Palmer, K. L., Bodi, K., Mongodin, E. F., Wortman, J., Feldgarden, M., Lawley, T., Gill, S. R.,

Journal:

Year:

2012

Language:

english

File:

PDF, 1.47 MB

english, 2012

25

Whole-Genome Sequences of 94 Environmental Isolates of Bacillus cereus Sensu Lato

Van der Auwera, G. A., Feldgarden, M., Kolter, R., Mahillon, J.

Journal:

Genome Announcements

Year:

2013

Language:

english

File:

PDF, 168 KB

english, 2013

26

SIZE DOESN'T MATTER: MICROBIAL SELECTION EXPERIMENTS ADDRESS ECOLOGICAL PHENOMENA

Feldgarden, Michael, Stoebel, Daniel M., Brisson, Dustin, Dykhuizen, Daniel E.

Journal:

Year:

2003

Language:

english

File:

PDF, 99 KB

english, 2003

27

To Thine Own Self be True? Yes! Thou Canst Not Then be False to Any Other. A Reply to Grosberg

Philip O. Yund and Michael Feldgarden

Journal:

Biological Bulletin

Year:

1992

Language:

english

File:

PDF, 147 KB

english, 1992

28

Comment on: Resistance gene naming and numbering: is it a new gene or not?

Jacoby, George A., Bonomo, Robert A., Bradford, Patricia A., Bush, Karen, Doi, Yohei, Feldgarden, Michael, Haft, Daniel, Klimke, William, Nordmann, Patrice, Palzkill, Timothy, Poirel, Laurent, Prasad,

Journal:

Journal of Antimicrobial Chemotherapy

Year:

2016

Language:

english

File:

PDF, 81 KB

english, 2016

29

Size Doesn't Matter: Microbial Selection Experiments Address Ecological Phenomena

Michael Feldgarden, Daniel M. Stoebel, Dustin Brisson and Daniel E. Dykhuizen

Journal:

Year:

2003

Language:

english

File:

PDF, 1.76 MB

english, 2003

30

NEW DEVELOPMENTS IN TAX ADMINISTRATION and PERSION PLANS || SELF-EMPLOYED RETIREMENT PLANS

ROBERT FELDGARDEN

Journal:

National Tax Journal

Year:

1974

Language:

english

File:

PDF, 673 KB

english, 1974

31

Adaptation of Escherichia coli traversing from the faecal environment to the urinary tract

Nielsen, Karen L., Stegger, Marc, Godfrey, Paul A., Feldgarden, Michael, Andersen, Paal S., Frimodt-Møller, Niels

Journal:

International Journal of Medical Microbiology

Year:

2016

Language:

english

File:

PDF, 1.24 MB

english, 2016

32

Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks

Cerqueira, Gustavo C., Earl, Ashlee M., Ernst, Christoph M., Grad, Yonatan H., Dekker, John P., Feldgarden, Michael, Chapman, Sinéad B., Reis-Cunha, João L., Shea, Terrance P., Young, Sarah, Zeng, Qia

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.63 MB

english, 2017

33

HIGH LEVELS OF COLICIN RESISTANCE IN ESCHERICHIA COLI

Feldgarden, Michael, Riley, Margaret A.

Journal:

Year:

1998

Language:

english

File:

PDF, 1.07 MB

english, 1998

34

THE PHENOTYPIC AND FITNESS EFFECTS OF COLICIN RESISTANCE IN ESCHERICHIA COLI K-12

Feldgarden, Michael, Riley, Margaret A.

Journal:

Year:

1999

Language:

english

File:

PDF, 941 KB

english, 1999

35

Whole-genome Comparison of Urinary Pathogenic Escherichia coli and Faecal Isolates of UTI Patients and Healthy Controls

Nielsen, Karen Leth, Stegger, Marc, Kiil, Kristoffer, Godfrey, Paul A., Feldgarden, Michael, Lilje, Berit, Andersen, Paal S., Frimodt-Møller, Niels

Journal:

International Journal of Medical Microbiology

Year:

2017

Language:

english

File:

PDF, 1.22 MB

english, 2017

36

Genomics of Corynebacterium striatum, an emerging multi-drug resistant pathogen of immunocompromised patients

Nudel, Kathleen, Zhao, Xiaomin, Basu, Sankha, Dong, Xiaoxi, Hoffmann, Maria, Feldgarden, Michael, Allard, Marc, Klompas, Michael, Bry, Lynn

Journal:

Clinical Microbiology and Infection

Year:

2018

Language:

english

File:

PDF, 2.69 MB

english, 2018

37

Proposal for assignment of allele numbers for mobile colistin resistance (mcr) genes

Partridge, Sally R, Di Pilato, Vincenzo, Doi, Yohei, Feldgarden, Michael, Haft, Daniel H, Klimke, William, Kumar-Singh, Samir, Liu, Jian-Hua, Malhotra-Kumar, Surbhi, Prasad, Arjun, Rossolini, Gian Mar

Journal:

Journal of Antimicrobial Chemotherapy

Year:

2018

Language:

english

File:

PDF, 175 KB

english, 2018

38

Phylogenomic Classification and the Evolution of Clonal Complex 5 Methicillin-Resistant Staphylococcus aureus in the Western Hemisphere

Challagundla, Lavanya, Reyes, Jinnethe, Rafiqullah, Iftekhar, Sordelli, Daniel O., Echaniz-Aviles, Gabriela, Velazquez-Meza, Maria E., Castillo-Ramírez, Santiago, Fittipaldi, Nahuel, Feldgarden, Micha

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 1.45 MB

english, 2018

39

Integrating Susceptibility Data from Two Surveillance Programs with Unique Methodological Techniques: The Antibiogram Resistance Method or Isolate-Based Resistance Monitoring (ARMOR) Study Group

Epstein, Benjamin J., Gums, John G., Turner, Phillip J., Feldgarden, Michael, Hou, Wei

Journal:

Hospital Pharmacy

Year:

2007

Language:

english

File:

PDF, 221 KB

english, 2007

40

Validating the NCBI AMRFinder Tool and Resistance Gene Database Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of NARMS Isolates

Feldgarden, Michael, Brover, Vyacheslav, Haft, Daniel H., Prasad, Arjun B., Slotta, Douglas J., Tolstoy, Igor, Tyson, Gregory H., Zhao, Shaohua, Hsu, Chih-Hao, McDermott, Patrick F., Tadesse, Daniel A

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2019

Language:

english

File:

PDF, 1.67 MB

english, 2019

41

Erratum for Feldgarden et al., âValidating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolatesâ

Feldgarden, Michael, Brover, Vyacheslav, Haft, Daniel H., Prasad, Arjun B., Slotta, Douglas J., Tolstoy, Igor, Tyson, Gregory H., Zhao, Shaohua, Hsu, Chih-Hao, McDermott, Patrick F., Tadesse, Daniel A

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2020

File:

PDF, 149 KB

2020