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51

Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors

Laurence Florens, Michael J. Carozza, Selene K. Swanson, Marjorie Fournier, Michael K. Coleman, Jerry L. Workman, Michael P. Washburn

Journal:

Year:

2006

Language:

english

File:

PDF, 331 KB

english, 2006

52

Statistical Analysis of Membrane Proteome Expression Changes in Saccharomyces c erevisiae

Zybailov, Boris, Mosley, Amber L., Sardiu, Mihaela E., Coleman, Michael K., Florens, Laurence, Washburn, Michael P.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 241 KB

english, 2006

53

Carbon Dioxide Induced Silk Protein Gelation for Biomedical Applications

Floren, Michael L., Spilimbergo, Sara, Motta, Antonella, Migliaresi, Claudio

Journal:

Biomacromolecules

Year:

2012

Language:

english

File:

PDF, 3.33 MB

english, 2012

54

The Little Elongation Complex Functions at Initiation and Elongation Phases of snRNA Gene Transcription

Hu, Deqing, Smith, Edwin R., Garruss, Alexander S., Mohaghegh, Nima, Varberg, Joseph M., Lin, Chengqi, Jackson, Jessica, Gao, Xin, Saraf, Anita, Florens, Laurence, Washburn, Michael P., Eissenberg, Jo

Journal:

Year:

2013

Language:

english

File:

PDF, 3.37 MB

english, 2013

55

Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange

Smolle, Michaela, Venkatesh, Swaminathan, Gogol, Madelaine M, Li, Hua, Zhang, Ying, Florens, Laurence, Washburn, Michael P, Workman, Jerry L

Journal:

Nature Structural and Molecular Biology

Year:

2012

Language:

english

File:

PDF, 1.18 MB

english, 2012

56

Anthropogenic Disturbance Changes the Structure of Arboreal Tropical ant Communities

Andreas Floren, Ansgar Freking, Michael Biehl and K. Eduard Linsenmair

Journal:

Year:

2001

Language:

english

File:

PDF, 1.80 MB

english, 2001

57

Correlation of Relative Abundance Ratios Derived from Peptide Ion Chromatograms and Spectrum Counting for Quantitative Proteomic Analysis Using Stable Isotope Labeling

Zybailov, Boris, Coleman, Michael K., Florens, Laurence, Washburn, Michael P.

Journal:

Analytical Chemistry

Year:

2005

Language:

english

File:

PDF, 142 KB

english, 2005

58

Polysome profiling reveals translational control of gene expression in the human malaria parasitePlasmodium falciparum

Bunnik, Evelien M, Chung, Duk-Won, Hamilton, Michael, Ponts, Nadia, Saraf, Anita, Prudhomme, Jacques, Florens, Laurence, Le Roch, Karine G

Journal:

Year:

2013

Language:

english

File:

PDF, 1.16 MB

english, 2013

59

Analysis of the heterochromatin protein 1 (HP1) interactome in Drosophila

Ryu, Hyun-Wook, Lee, Dong Hoon, Florens, Laurence, Swanson, Selene K., Washburn, Michael P., Kwon, So Hee

Journal:

Journal of Proteomics

Year:

2014

Language:

english

File:

PDF, 1.64 MB

english, 2014

60

INTS3 Controls the hSSBl -Mediated DNA Damage Response

Jeffrey R. Skaar, Derek J. Richard, Anita Saraf, Alfredo Toschi, Emma Bolderson, Laurence Florens, Michael P. Washburn, Kum Kum Khanna and Michele Pagano

Journal:

The Journal of Cell Biology

Year:

2009

Language:

english

File:

PDF, 1.72 MB

english, 2009

61

Regulation of the CRL4Cdt2 Ubiquitin Ligase and Cell-Cycle Exit by the SCFFbxo11 Ubiquitin Ligase

Rossi, Mario, Duan, Shanshan, Jeong, Yeon-Tae, Horn, Moritz, Saraf, Anita, Florens, Laurence, Washburn, Michael P., Antebi, Adam, Pagano, Michele

Journal:

Year:

2013

Language:

english

File:

PDF, 865 KB

english, 2013

62

Improving Proteomics Mass Accuracy by Dynamic Offline Lock Mass

Zhang, Ying, Wen, Zhihui, Washburn, Michael P., Florens, Laurence

Journal:

Analytical Chemistry

Year:

2011

Language:

english

File:

PDF, 1.53 MB

english, 2011

63

Purification of a Human SRCAP Complex That Remodels Chromatin by Incorporating the Histone Variant H2A.Z into Nucleosomes †

Ruhl, Donald D., Jin, Jingji, Cai, Yong, Swanson, Selene, Florens, Laurence, Washburn, Michael P., Conaway, Ronald C., Conaway, Joan Weliky, Chrivia, John C.

Journal:

Year:

2006

Language:

english

File:

PDF, 182 KB

english, 2006

64

Swi/Snf dynamics on stress-responsive genes is governed by competitive bromodomain interactions

Dutta, Arnob, Gogol, Madelaine, Kim, Jeong-Hoon, Smolle, Michaela, Venkatesh, Swaminathan, Gilmore, Joshua, Florens, Laurence, Washburn, Michael P., Workman, Jerry L.

Journal:

Genes & Development

Year:

2014

Language:

english

File:

PDF, 3.22 MB

english, 2014

65

Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors

Zybailov, Boris L., Florens, Laurence, Washburn, Michael P.

Journal:

Molecular BioSystems

Year:

2007

Language:

english

File:

PDF, 494 KB

english, 2007

66

Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein

Hrecka, Kasia, Hao, Caili, Gierszewska, Magda, Swanson, Selene K., Kesik-Brodacka, Malgorzata, Srivastava, Smita, Florens, Laurence, Washburn, Michael P., Skowronski, Jacek

Journal:

Year:

2011

Language:

english

File:

PDF, 440 KB

english, 2011

67

Synergism of Matrix Stiffness and Vascular Endothelial Growth Factor on Mesenchymal Stem Cells for Vascular Endothelial Regeneration

Wingate, Kathryn, Floren, Michael, Tan, Yan, Tseng, Pi Ou Nancy, Tan, Wei

Journal:

Tissue Engineering Part A

Year:

2014

Language:

english

File:

PDF, 459 KB

english, 2014

68

Suberoylanilide Hydroxamic Acid (SAHA)-Induced Dynamics of a Human Histone Deacetylase Protein Interaction Network

Sardiu, Mihaela E., Smith, Karen T., Groppe, Brad D., Gilmore, Joshua M., Saraf, Anita, Egidy, Rhonda, Peak, Allison, Seidel, Chris W., Florens, Laurence, Workman, Jerry L., Washburn, Michael P.

Journal:

Molecular & Cellular Proteomics

Year:

2014

Language:

english

File:

PDF, 1.22 MB

english, 2014

69

Degradation of Cep68 and PCNT cleavage mediate Cep215 removal from the PCM to allow centriole separation, disengagement and licensing

Pagan, Julia K., Marzio, Antonio, Jones, Mathew J. K., Saraf, Anita, Jallepalli, Prasad V., Florens, Laurence, Washburn, Michael P., Pagano, Michele

Journal:

Nature Cell Biology

Year:

2014

Language:

english

File:

PDF, 5.94 MB

english, 2014

70

Characterization of Human Cyclin-Dependent Kinase 12 (CDK12) and CDK13 Complexes in C-Terminal Domain Phosphorylation, Gene Transcription, and RNA Processing

Liang, Kaiwei, Gao, Xin, Gilmore, Joshua M., Florens, Laurence, Washburn, Michael P., Smith, Edwin, Shilatifard, Ali

Journal:

Molecular and Cellular Biology

Year:

2015

Language:

english

File:

PDF, 4.63 MB

english, 2015

71

FBXL2- and PTPL1-mediated degradation of p110-free p85β regulatory subunit controls the PI(3)K signalling cascade

Kuchay, Shafi, Duan, Shanshan, Schenkein, Emily, Peschiaroli, Angelo, Saraf, Anita, Florens, Laurence, Washburn, Michael P., Pagano, Michele

Journal:

Nature Cell Biology

Year:

2013

Language:

english

File:

PDF, 1.98 MB

english, 2013

72

Zic2 Is an Enhancer-Binding Factor Required for Embryonic Stem Cell Specification

Luo, Zhuojuan, Gao, Xin, Lin, Chengqi, Smith, Edwin R., Marshall, Stacy A., Swanson, Selene K., Florens, Laurence, Washburn, Michael P., Shilatifard, Ali

Journal:

Year:

2015

Language:

english

File:

PDF, 2.69 MB

english, 2015

73

The Integrator complex controls the termination of transcription at diverse classes of gene targets

Skaar, Jeffrey R, Ferris, Andrea L, Wu, Xiaolin, Saraf, Anita, Khanna, Kum Kum, Florens, Laurence, Washburn, Michael P, Hughes, Stephen H, Pagano, Michele

Journal:

Year:

2015

Language:

english

File:

PDF, 1.81 MB

english, 2015

74

Endoplasmic Reticulum Stress-responsive Transcription Factor ATF6α Directs Recruitment of the Mediator of RNA Polymerase II Transcription and Multiple Histone Acetyltransferase Complexes

Sela, Dotan, Chen, Lu, Martin-Brown, Skylar, Washburn, Michael P., Florens, Laurence, Conaway, Joan Weliky, Conaway, Ronald C.

Journal:

Journal of Biological Chemistry

Year:

2012

Language:

english

File:

PDF, 2.62 MB

english, 2012

75

Improving Label-Free Quantitative Proteomics Strategies by Distributing Shared Peptides and Stabilizing Variance

Zhang, Ying, Wen, Zhihui, Washburn, Michael P., Florens, Laurence

Journal:

Analytical Chemistry

Year:

2015

Language:

english

File:

PDF, 857 KB

english, 2015

76

The Effect of Unobserved Heterogeneity in Stochastic Frontier Estimation: Comparison of Cross Section and Panel with Simulated Data for the Postal Sector

Cazals, Catherine, Dudley, Paul, Florens, Jean-Pierre, Jones, Michael

Journal:

Review of Network Economics

Year:

2011

Language:

english

File:

PDF, 614 KB

english, 2011

77

CyclinA2-Cyclin-dependent Kinase Regulates SAMHD1 Protein Phosphohydrolase Domain

Yan, Junpeng, Hao, Caili, DeLucia, Maria, Swanson, Selene, Florens, Laurence, Washburn, Michael P., Ahn, Jinwoo, Skowronski, Jacek

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 3.27 MB

english, 2015

78

Three-dimensional, soft neotissue arrays as high throughput platforms for the interrogation of engineered tissue environments

Floren, Michael, Tan, Wei

Journal:

Year:

2015

Language:

english

File:

PDF, 4.58 MB

english, 2015

79

TRIM29 regulates the assembly of DNA repair proteins into damaged chromatin

Masuda, Yasushi, Takahashi, Hidehisa, Sato, Shigeo, Tomomori-Sato, Chieri, Saraf, Anita, Washburn, Michael P., Florens, Laurence, Conaway, Ronald C., Conaway, Joan W., Hatakeyama, Shigetsugu

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 3.19 MB

english, 2015

80

Assembly of the Elongin A Ubiquitin Ligase Is Regulated by Genotoxic and Other Stresses

Weems, Juston C., Slaughter, Brian D., Unruh, Jay R., Hall, Shawn M., McLaird, Merry B., Gilmore, Joshua M., Washburn, Michael P., Florens, Laurence, Yasukawa, Takashi, Aso, Teijiro, Conaway, Joan W.,

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 2.21 MB

english, 2015

81

Nuclear cGMP-Dependent Kinase Regulates Gene Expression via Activity-Dependent Recruitment of a Conserved Histone Deacetylase Complex

Hao, Yan, Xu, Ningyi, Box, Andrew C., Schaefer, Laura, Kannan, Kasthuri, Zhang, Ying, Florens, Laurence, Seidel, Christopher, Washburn, Michael P., Wiegraebe, Winfried, Mak, Ho Yi, Chisholm, Andrew D.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.51 MB

english, 2011

82

The tumour antigen PRAME is a subunit of a Cul2 ubiquitin ligase and associates with active NFY promoters

Costessi, Adalberto, Mahrour, Nawel, Tijchon, Esther, Stunnenberg, Rieka, Stoel, Marieke A, Jansen, Pascal W, Sela, Dotan, Martin-Brown, Skylar, Washburn, Michael P, Florens, Laurence, Conaway, Joan W

Journal:

The EMBO Journal

Year:

2011

Language:

english

File:

PDF, 625 KB

english, 2011

83

Lentiviral Vpx Accessory Factor Targets VprBP/DCAF1 Substrate Adaptor for Cullin 4 E3 Ubiquitin Ligase to Enable Macrophage Infection

Srivastava, Smita, Swanson, Selene K., Manel, Nicolas, Florens, Laurence, Washburn, Michael P., Skowronski, Jacek, Luban, Jeremy

Journal:

Year:

2008

Language:

english

File:

PDF, 559 KB

english, 2008

84

Cyclin-dependent Kinase-mediated Sox2 Phosphorylation Enhances the Ability of Sox2 to Establish the Pluripotent State

Ouyang, Juan, Yu, Wei, Liu, Jing, Zhang, Nian, Florens, Laurence, Chen, Jiekai, Liu, He, Washburn, Michael, Pei, Duanqing, Xie, Ting

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 9.37 MB

english, 2015

85

Human mesenchymal stem cells cultured on silk hydrogels with variable stiffness and growth factor differentiate into mature smooth muscle cell phenotype

Floren, Michael, Bonani, Walter, Dharmarajan, Anirudh, Motta, Antonella, Migliaresi, Claudio, Tan, Wei

Journal:

Acta Biomaterialia

Year:

2015

Language:

english

File:

PDF, 4.02 MB

english, 2015

86

Moco biosynthesis and the ATAC acetyltransferase engage translation initiation by inhibiting latent PKR activity

Suganuma, Tamaki, Swanson, Selene K., Florens, Laurence, Washburn, Michael P., Workman, Jerry L.

Journal:

Journal of Molecular Cell Biology

Year:

2015

Language:

english

File:

PDF, 1.00 MB

english, 2015

87

The spliceosomal protein SF3B5 is a novel component of Drosophila SAGA that functions in gene expression independent of splicing

Stegeman, Rachel, Spreacker, Peyton J., Swanson, Selene K., Stephenson, Robert, Florens, Laurence, Washburn, Michael P., Weake, Vikki M.

Journal:

Journal of Molecular Biology

Year:

2016

Language:

english

File:

PDF, 2.08 MB

english, 2016

88

The Enok acetyltransferase complex interacts with Elg1 and negatively regulates PCNA unloading to promote the G1/S transition

Huang, Fu, Saraf, Anita, Florens, Laurence, Kusch, Thomas, Swanson, Selene K., Szerszen, Leanne T., Li, Ge, Dutta, Arnob, Washburn, Michael P., Abmayr, Susan M., Workman, Jerry L.

Journal:

Genes & Development

Year:

2016

Language:

english

File:

PDF, 572 KB

english, 2016

89

Corrigendum to “Three-dimensional, soft neotissue arrays as high throughput platforms for the interrogation of engineered tissue environments” [Biomaterials 59 (2015) 39–52]

Floren, Michael, Tan, Wei

Journal:

Year:

2015

Language:

english

File:

PDF, 126 KB

english, 2015

90

Dynamic and combinatorial landscape of histone modifications during the intra-erythrocytic developmental cycle of the malaria parasite

Saraf, Anita, Cervantes, Serena, Bunnik, Evelien M, Ponts, Nadia Paule, Sardiu, Mihaela E, Chung, Duk-Won Doug, Prudhomme, Jacques, Varberg, Joseph, Wen, Zhihui, Washburn, Michael Paul, Florens, Laure

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 2.07 MB

english, 2016

91

HIV-1 and HIV-2 exhibit divergent interactions with HLTF and UNG2 DNA repair proteins

Hrecka, Kasia, Hao, Caili, Shun, Ming-Chieh, Kaur, Sarabpreet, Swanson, Selene K., Florens, Laurence, Washburn, Michael P., Skowronski, Jacek

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.78 MB

english, 2016

92

Noninvasive Inductive Stent Heating

Floren, Michael G., G??nther, Rolf W., Schmitz-Rode, Thomas

Journal:

Investigative Radiology

Year:

2004

Language:

english

File:

PDF, 931 KB

english, 2004

93

Structure-based optimization of potent, selective and orally bioavailable CDK8 inhibitors discovered by high throughput screening

Czodrowski, Paul, Mallinger, Aurélie, Wienke, Dirk, Esdar, Christina, Poeschke, Oliver, Busch, Michael, Rohdich, Felix, Eccles, Suzanne A., Ortiz Ruiz, Maria Jesus, Schneider, Richard, Raynaud, Floren

Journal:

Journal of Medicinal Chemistry

Year:

2016

Language:

english

File:

PDF, 1.71 MB

english, 2016

94

Cytoplasmic ATXN7L3B Interferes with Nuclear Functions of the SAGA Deubiquitinase Module

Li, Wenqian, Atanassov, Boyko S., Lan, Xianjiang, Mohan, Ryan D., Swanson, Selene K., Farria, Aimee T., Florens, Laurence, Washburn, Michael P., Workman, Jerry L., Dent, Sharon Y.R.

Journal:

Molecular and Cellular Biology

Year:

2016

Language:

english

File:

PDF, 1.09 MB

english, 2016

95

Myeloid Leukemia Factor acts in a chaperone complex to regulate transcription factor stability and gene expression

Dyer, Jamie O., Dutta, Arnob, Gogol, Madelaine, Weake, Vikki M., Dialynas, George, Wu, Xilan, Seidel, Christopher, Zhang, Ying, Florens, Laurence, Washburn, Michael P., Abmayr, Susan M., Workman, Jerr

Journal:

Journal of Molecular Biology

Year:

2016

Language:

english

File:

PDF, 905 KB

english, 2016

96

Role for the MED21-MED7 Hinge in Assembly of the Mediator-RNA Polymerase II Holoenzyme

Sato, Shigeo, Tomomori-Sato, Chieri, Tsai, Kuang-Lei, Yu, Xiaodi, Sardiu, Mihaela, Saraf, Anita, Washburn, Michael P., Florens, Laurence, Asturias, Francisco J., Conaway, Ronald C., Conaway, Joan W.

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 2.04 MB

english, 2016

97

Advancement of mass spectrometry-based proteomics technologies to explore triple negative breast cancer

Miah, Sayem, Banks, Charles, Adams, Mark, Florens, Laurence, Lukong, Kiven, Washburn, Michael

Journal:

Molecular BioSystems

Year:

2016

Language:

english

File:

PDF, 1.93 MB

english, 2016

98

USP44 Is an Integral Component of N-CoR that Contributes to Gene Repression by Deubiquitinating Histone H2B

Lan, Xianjiang, Atanassov, Boyko S., Li, Wenqian, Zhang, Ying, Florens, Laurence, Mohan, Ryan D., Galardy, Paul J., Washburn, Michael P., Workman, Jerry L., Dent, Sharon Y.R.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.34 MB

english, 2016

99

Mussel-Inspired Polydopamine for Bio-Surface Functionalization

Ding, Yonghui, Floren, Michael, Tan, Wei

Journal:

Biosurface and Biotribology

Year:

2016

Language:

english

File:

PDF, 2.68 MB

english, 2016

100

The membrane-associated proteins FCHo and SGIP are allosteric activators of the AP2 clathrin adaptor complex

Hollopeter, Gunther, Lange, Jeffrey J, Zhang, Ying, Vu, Thien N, Gu, Mingyu, Ailion, Michael, Lambie, Eric J, Slaughter, Brian D, Unruh, Jay R, Florens, Laurence, Jorgensen, Erik M

Journal:

Year:

2014

Language:

english

File:

PDF, 5.10 MB

english, 2014