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51

Conformational study of a short Pertussis toxin T cell epitope incorporated in a multiple antigen peptide template by CD and two-dimensional NMR : Analysis of the structural effects on the activity of synthetic immunogens

Gennaro ESPOSITO, Federico FOGOLARI, Paolo VIGLINO, Serge CATTARINUSSI, Maria Teresa DE MAGISTRIS, Lorella CHIAPPINELLI, Antonello PESSI

Journal:

Year:

1993

Language:

english

File:

PDF, 1.38 MB

english, 1993

52

Analysis of the Solution Structure of the Homeodomain of Rat Thyroid Transcription Factor 1 by 1H-NMR Spectroscopy and Restrained Molecular Mechanics

Gennaro Esposito, Federico Fogolari, Giuseppe Damante, Silvestro Formisano, Gianluca Tell, Antonio Leonardi, Roberto Di Lauro, Paolo Viglino

Journal:

Year:

1996

Language:

english

File:

PDF, 1.69 MB

english, 1996

53

Mitochondrial F0F1-ATP synthase is a molecular target of 3-iodothyronamine, an endogenous metabolite of thyroid hormone

S Cumero, F Fogolari, R Domenis, R Zucchi, I Mavelli, S Contessi

Journal:

British Journal of Pharmacology

Year:

2012

Language:

english

File:

PDF, 2.45 MB

english, 2012

54

Bluues server: electrostatic properties of wild-type and mutated protein structures

Walsh, I., Minervini, G., Corazza, A., Esposito, G., Tosatto, S. C. E., Fogolari, F.

Journal:

Year:

2012

Language:

english

File:

PDF, 155 KB

english, 2012

55

Presence of Dityrosine Bridges in Thyroglobulin and Their Relationship with Iodination

A. Leonardi, R. Acquaviva, M. Marinaccio, D. Liguoro, F. Fogolari, B. Dijeso, S. Formisano, E. Consiglio

Journal:

Biochemical and Biophysical Research Communications

Year:

1994

File:

PDF, 272 KB

1994

56

Electrostatic effects in homeodomain-DNA interactions

F Fogolari, A.H Elcock, G Esposito, P Viglino, J.M Briggs, J.A McCammon

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 382 KB

english, 1997

57

Electrostatic and non-electrostatic contributions to the binding free energies of anthracycline antibiotics to DNA

Maciej Baginski, Federico Fogolari, James M Briggs

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 471 KB

english, 1997

58

Unfolding and refolding of bovine β-lactoglobulin monitored by hydrogen exchange measurements

L. Ragona, F. Fogolari, S. Romagnoli, L. Zetta, J.L. Maubois, H. Molinari

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 619 KB

english, 1999

59

NMR and circular dichroism studies of the lantibiotic nisin in non-aqueous environments

Henno W. van den Hooven, Federico Fogolari, Harry S. Rollema, Ruud N.H. Konings, Cornelis W. Hilbers, Frank J.M. van de Ven

Journal:

Year:

1993

Language:

english

File:

PDF, 514 KB

english, 1993

60

Structural study of rat thyroid transcription factor 1 homeodomain (TTF-1 HD) by nuclear magnetic resonance

Paolo Viglino, Federico Fogolari, Silvestro Formisano, Nadia Bortolotti, Giuseppe Damante, Roberto Di Lauro, Gennaro Esposito

Journal:

Year:

1993

Language:

english

File:

PDF, 627 KB

english, 1993

61

Analysis of the conformation and stability of rat TTF-1 homeodomain by circular dichroism

Giuseppe Damante, Gianluca Tella, Antonio Leonardi, Federico Fogolari, Nadia Bortolotti, Roberto Di Lauroa, Silvestro Formisano

Journal:

Year:

1994

Language:

english

File:

PDF, 488 KB

english, 1994

62

Single-shot NMR measurement of protein unfolding landscapes

Enrico Rennella, Alessandra Corazza, Luca Codutti, Araldo Causero, Vittorio Bellotti, Monica Stoppini, Paolo Viglino, Federico Fogolari, Gennaro Esposito

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2012

Language:

english

File:

PDF, 1.09 MB

english, 2012

63

The Controlling Roles of Trp60 and Trp95 in β2-Microglobulin Function, Folding and Amyloid Aggregation Properties

Gennaro Esposito, Stefano Ricagno, Alessandra Corazza, Enrico Rennella, Devrim Gümral, Maria Chiara Mimmi, Elena Betto, Carlo E.M. Pucillo, Federico Fogolari, Paolo Viglino, Sara Raimondi, Sofia Giorg

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 1.03 MB

english, 2008

64

Folding and Fibrillogenesis: Clues from β2-Microglobulin

Enrico Rennella, Alessandra Corazza, Sofia Giorgetti, Federico Fogolari, Paolo Viglino, Riccardo Porcari, Laura Verga, Monica Stoppini, Vittorio Bellotti, Gennaro Esposito

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.71 MB

english, 2010

65

Thermodynamic and electrostatic properties of ternary Oxytricha nova TEBP–DNA complex

M. Wojciechowski, F. Fogolari, M. Baginski

Journal:

Journal of Structural Biology

Year:

2005

Language:

english

File:

PDF, 593 KB

english, 2005

66

Monomeric bovine β-lactoglobulin adopts a β-barrel fold at pH 2

F Fogolari, L Ragona, L Zetta, S Romagnoli, K.G De Kruif, H Molinari

Journal:

Year:

1998

Language:

english

File:

PDF, 408 KB

english, 1998

67

Comparative stability analysis of the thyroid transcription factor 1 and Antennapedia homeodomains: evidence for residue 54 in controlling the structural stability of the recognition helix

Gianluca Tell, Renato Acquaviva, Silvestro Formisano, Federico Fogolari, Carlo Pucillo, Giuseppe Damante

Journal:

The International Journal of Biochemistry & Cell Biology

Year:

1999

Language:

english

File:

PDF, 257 KB

english, 1999

68

NMR-based homology model for the solution structure of the C-terminal globular domain of EMILIN1

Giuliana Verdone, Alessandra Corazza, Simon A. Colebrooke, Daniel Cicero, Tommaso Eliseo, Jonathan Boyd, Roberto Doliana, Federico Fogolari, Paolo Viglino, Alfonso Colombatti, Iain D. Campbell, Gennar

Journal:

Journal of Biomolecular NMR

Year:

2009

Language:

english

File:

PDF, 737 KB

english, 2009

69

Protocol for MM/PBSA Molecular Dynamics Simulations of Proteins

Fogolari, Federico, Brigo, Alessandro, Molinari, Henriette

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 148 KB

english, 2003

70

The Projection Analysis of NMR Chemical Shifts Reveals Extended EPAC Autoinhibition Determinants

Selvaratnam, Rajeevan, VanSchouwen, Bryan, Fogolari, Federico, Mazhab-Jafari, Mohammad T., Das, Rahul, Melacini, Giuseppe

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 1.32 MB

english, 2012

71

Modeling of polypeptide chains as C alpha chains, C alpha chains with C beta, and C alpha chains with ellipsoidal lateral chains

Fogolari, F., Esposito, G., Viglino, P., Cattarinussi, S.

Journal:

Biophysical Journal

Year:

1996

Language:

english

File:

PDF, 1.42 MB

english, 1996

72

Biomolecular Electrostatics with the Linearized Poisson-Boltzmann Equation

Fogolari, Federico, Zuccato, Pierfrancesco, Esposito, Gennaro, Viglino, Paolo

Journal:

Biophysical Journal

Year:

1999

Language:

english

File:

PDF, 526 KB

english, 1999

73

Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii

Federico Fogolari, Alessandra Corazza, Vijaylakshmi Yarra, Anusha Jalaru, Paolo Viglino, Gennaro Esposito

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 691 KB

english, 2012

74

Molecular Dynamics Simulation Suggests Possible Interaction Patterns at Early Steps of β2-Microglobulin Aggregation

Fogolari, Federico, Corazza, Alessandra, Viglino, Paolo, Zuccato, Pierfrancesco, Pieri, Lidia, Faccioli, Pietro, Bellotti, Vittorio, Esposito, Gennaro

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 884 KB

english, 2007

75

Equilibrium Unfolding Thermodynamics of β2-Microglobulin Analyzed through Native-State H/D Exchange

Rennella, Enrico, Corazza, Alessandra, Fogolari, Federico, Viglino, Paolo, Giorgetti, Sofia, Stoppini, Monica, Bellotti, Vittorio, Esposito, Gennaro

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 998 KB

english, 2009

76

Effect of grape seeds on the polyphenol bioactive content and elemental composition by ICP-MS of grape juices from Vitis labrusca L.

Toaldo, Isabela Maia, Fogolari, Odinei, Pimentel, Gabriela Cadore, de Gois, Jefferson Santos, Borges, Daniel L.G., Caliari, Vinícius, Bordignon-Luiz, Marilde

Journal:

Lebensmittel-Wissenschaft und-Technologie / Food Science and Technology

Year:

2013

Language:

english

File:

PDF, 518 KB

english, 2013

77

Generalized Born forces: Surface integral formulation

Fogolari, Federico, Corazza, Alessandra, Esposito, Gennaro

Journal:

The Journal of Chemical Physics

Year:

2013

Language:

english

File:

PDF, 895 KB

english, 2013

78

A differential equation for the Generalized Born radii

Fogolari, Federico, Corazza, Alessandra, Esposito, Gennaro

Journal:

Physical Chemistry Chemical Physics

Year:

2013

Language:

english

File:

PDF, 2.35 MB

english, 2013

79

NMR Solution Structure of Viscotoxin C1 from Viscum Album Species Coloratum ohwi : Toward a Structure−Function Analysis of Viscotoxins †

Romagnoli, Silvia, Fogolari, Federico, Catalano, Maddalena, Zetta, Lucia, Schaller, Gerhard, Urech, Konrad, Giannattasio, Matteo, Ragona, Laura, Molinari, Henriette

Journal:

Year:

2003

Language:

english

File:

PDF, 451 KB

english, 2003

80

Fast structure similarity searches among protein models: efficient clustering of protein fragments

Federico Fogolari, Alessandra Corazza, Paolo Viglino…

Journal:

Algorithms for Molecular Biology

Year:

2012

Language:

english

File:

PDF, 312 KB

english, 2012

81

NMR structural characterization of the reaction product between d(GpG) and the octahedral antitumor complex trans-RuCl2(DMSO)4

Esposito, Gennaro, Cauci, Sabina, Fogolari, Federico, Alessio, Enzo, Scocchi, Marco, Quadrifoglio, Franco, Viglino, Paolo

Journal:

Year:

1992

Language:

english

File:

PDF, 1.16 MB

english, 1992

82

Gli “agoranomi„ di Pathyris-Crocodilopoli (Tebaide)

Journal:

Year:

1921

File:

PDF, 588 KB

1921

83

Phytochemical Polyphenol Extraction and Elemental Composition ofVitis labruscaL. Grape Juices Through Optimization of Pectinolytic Activity

Toaldo, Isabela Maia, de Gois, Jefferson Santos, Fogolari, Odinei, Hamann, Daniele, Borges, Daniel L. G., Bordignon-Luiz, Marilde T.

Journal:

Food and Bioprocess Technology

Year:

2014

Language:

english

File:

PDF, 2.06 MB

english, 2014

84

Modulation of F-ATP synthase by pH: Role of His112 protonation of OSCP

Antoniel, Manuela, Spolaore, Barbara, Giorgio, Valentina, Fogolari, Federico, Petronilli, Valeria, Bernardi, Paolo, Lippe, Giovanna

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2014

Language:

english

File:

PDF, 69 KB

english, 2014

85

p K a Shift Effects on Backbone Amide Base-Catalyzed Hydrogen Exchange Rates in Peptides

Fogolari, Federico, Esposito, Gennaro, Viglino, Paolo, Briggs, James M., McCammon, J. Andrew

Journal:

Journal of the American Chemical Society

Year:

1998

Language:

english

File:

PDF, 75 KB

english, 1998

86

Investigations of Sso7d Catalytic Residues by NMR Titration Shifts and Electrostatic Calculations †

Consonni, Roberto, Arosio, Ivana, Belloni, Barbara, Fogolari, Federico, Fusi, Paola, Shehi, Erlet, Zetta, Lucia

Journal:

Year:

2003

Language:

english

File:

PDF, 252 KB

english, 2003

87

Determining the Energy Landscape of Proteins by a Fast Isotope Exchange NMR Approach

Rennella, Enrico, Corazza, Alessandra, Codutti, Luca, Bellotti, Vittorio, Stoppini, Monica, Viglino, Paolo, Fogolari, Federico, Esposito, Gennaro

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 1.20 MB

english, 2012

88

Native-unlike Long-lived Intermediates along the Folding Pathway of the Amyloidogenic Protein 2-Microglobulin Revealed by Real-time Two-dimensional NMR

Corazza, A., Rennella, E., Schanda, P., Mimmi, M. C., Cutuil, T., Raimondi, S., Giorgetti, S., Fogolari, F., Viglino, P., Frydman, L., Gal, M., Bellotti, V., Brutscher, B., Esposito, G.

Journal:

Journal of Biological Chemistry

Year:

2010

Language:

english

File:

PDF, 2.67 MB

english, 2010

89

Peptide Models of Folding Initiation Sites of Bovine β-Lactoglobulin: Identification of Nativelike Hydrophobic Interactions Involving G and H Strands †

Ragona, Laura, Catalano, Maddalena, Zetta, Lucia, Longhi, Renato, Fogolari, Federico, Molinari, Henriette

Journal:

Year:

2002

Language:

english

File:

PDF, 201 KB

english, 2002

90

Structure, Folding Dynamics, and Amyloidogenesis of D76N 2-Microglobulin: ROLES OF SHEAR FLOW, HYDROPHOBIC SURFACES, AND -CRYSTALLIN

Mangione, P. P., Esposito, G., Relini, A., Raimondi, S., Porcari, R., Giorgetti, S., Corazza, A., Fogolari, F., Penco, A., Goto, Y., Lee, Y.-H., Yagi, H., Cecconi, C., Naqvi, M. M., Gillmore, J. D., H

Journal:

Journal of Biological Chemistry

Year:

2013

Language:

english

File:

PDF, 3.94 MB

english, 2013

91

Reduction of conformational mobility and aggregation in W60G β 2 -microglobulin: assessment by 15 N NMR relaxation

Gümral, Devrim, Fogolari, Federico, Corazza, Alessandra, Viglino, Paolo, Giorgetti, Sofia, Stoppini, Monica, Bellotti, Vittorio, Esposito, Gennaro

Journal:

Magnetic Resonance in Chemistry

Year:

2013

Language:

english

File:

PDF, 1.49 MB

english, 2013

92

Dimers of mitochondrial ATP synthase form the permeability transition pore

Giorgio, V., von Stockum, S., Antoniel, M., Fabbro, A., Fogolari, F., Forte, M., Glick, G. D., Petronilli, V., Zoratti, M., Szabo, I., Lippe, G., Bernardi, P.

Journal:

Proceedings of the National Academy of Sciences

Year:

2013

Language:

english

File:

PDF, 745 KB

english, 2013

93

Probing the Influence of Citrate-Capped Gold Nanoparticles on an Amyloidogenic Protein

Brancolini, Giorgia, Corazza, Alessandra, Vuano, Marco, Fogolari, Federico, Mimmi, Maria Chiara, Bellotti, Vittorio, Stoppini, Monica, Corni, Stefano, Esposito, Gennaro

Journal:

Year:

2015

Language:

english

File:

PDF, 2.15 MB

english, 2015

94

Accuracy assessment of the linear Poisson-Boltzmann equation and reparametrization of the OBC generalized Born model for nucleic acids and nucleic acid-protein complexes

Fogolari, Federico, Corazza, Alessandra, Esposito, Gennaro

Journal:

Journal of Computational Chemistry

Year:

2015

Language:

english

File:

PDF, 1.15 MB

english, 2015

95

Monitoring the Interaction between 2-Microglobulin and the Molecular Chaperone B-crystallin by NMR and Mass Spectrometry: B-CRYSTALLIN DISSOCIATES 2-MICROGLOBULIN OLIGOMERS

Esposito, G., Garvey, M., Alverdi, V., Pettirossi, F., Corazza, A., Fogolari, F., Polano, M., Mangione, P. P., Giorgetti, S., Stoppini, M., Rekas, A., Bellotti, V., Heck, A. J. R., Carver, J. A.

Journal:

Journal of Biological Chemistry

Year:

2013

Language:

english

File:

PDF, 3.37 MB

english, 2013

96

SIRT1 gene expression upon genotoxic damage is regulated by APE1 through nCaRE-promoter elements

Antoniali, G., Lirussi, L., D'Ambrosio, C., Dal Piaz, F., Vascotto, C., Casarano, E., Marasco, D., Scaloni, A., Fogolari, F., Tell, G.

Journal:

Molecular Biology of the Cell

Year:

2014

Language:

english

File:

PDF, 1.81 MB

english, 2014

97

Free Energies Calculated According to Manning's Polyelectrolyte Model Compared with Poisson Boltzmann Predictions

Fogolari, Federico, Cattarinussi, Serge, Esposito, Gennaro, Viglino, Paolo

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1993

Language:

english

File:

PDF, 320 KB

english, 1993

98

Effect of Tetracyclines on the Dynamics of Formation and Destructuration of 2-Microglobulin Amyloid Fibrils

Giorgetti, S., Raimondi, S., Pagano, K., Relini, A., Bucciantini, M., Corazza, A., Fogolari, F., Codutti, L., Salmona, M., Mangione, P., Colombo, L., De Luigi, A., Porcari, R., Gliozzi, A., Stefani, M

Journal:

Journal of Biological Chemistry

Year:

2011

Language:

english

File:

PDF, 3.92 MB

english, 2011

99

Role of Dynamics in the Autoinhibition and Activation of the Exchange Protein Directly Activated by Cyclic AMP (EPAC)

VanSchouwen, B., Selvaratnam, R., Fogolari, F., Melacini, G.

Journal:

Journal of Biological Chemistry

Year:

2011

Language:

english

File:

PDF, 4.79 MB

english, 2011

100

Structural and Dynamics Characteristics of Acylphosphatase from Sulfolobus solfataricus in the Monomeric State and in the Initial Native-like Aggregates

Pagano, K., Bemporad, F., Fogolari, F., Esposito, G., Viglino, P., Chiti, F., Corazza, A.

Journal:

Journal of Biological Chemistry

Year:

2010

Language:

english

File:

PDF, 3.52 MB

english, 2010