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1

Neutron scattering in the biological sciences: progress and prospects

Ashkar, Rana, Bilheux, Hassina Z., Bordallo, Heliosa, Briber, Robert, Callaway, David J. E., Cheng, Xiaolin, Chu, Xiang-Qiang, Curtis, Joseph E., Dadmun, Mark, Fenimore, Paul, Fushman, David, Gabel, F

Journal:

Acta Crystallographica Section D Structural Biology

Year:

2018

Language:

english

File:

PDF, 3.07 MB

english, 2018

2

Combining structured and unstructured data to identify a cohort of ICU patients who received dialysis

Abhyankar, S., Demner-Fushman, D., Callaghan, F. M., McDonald, C. J.

Journal:

Journal of the American Medical Informatics Association

Year:

2014

Language:

english

File:

PDF, 470 KB

english, 2014

3

Word sense disambiguation by selecting the best semantic type based on Journal Descriptor Indexing: Preliminary experiment

Susanne M. Humphrey, Willie J. Rogers, Halil Kilicoglu, Dina Demner-Fushman, Thomas C. Rindflesch

Journal:

Journal of the American Society for Information Science and Technology

Year:

2006

Language:

english

File:

PDF, 376 KB

english, 2006

4

Determination of the Rotational Diffusion Tensor of Macromolecules in Solution from NMR Relaxation Data with a Combination of Exact and Approximate Methods—Application to the Determination of Interdomain Orientation in Multidomain Proteins

Ranajeet Ghose, David Fushman, David Cowburn

Journal:

Journal of Magnetic Resonance

Year:

2001

Language:

english

File:

PDF, 335 KB

english, 2001

5

Efficient and accurate determination of the overall rotational diffusion tensor of a molecule from 15N relaxation data using computer program ROTDIF

Olivier Walker, Ranjani Varadan, David Fushman

Journal:

Journal of Magnetic Resonance

Year:

2004

Language:

english

File:

PDF, 473 KB

english, 2004

6

Quantum dots in photonic crystals: From quantum information processing to single photon nonlinear optics

Dirk Englund, Ilya Fushman, Andrei Faraon, Jelena Vučković

Journal:

Photonics and Nanostructures - Fundamentals and Applications

Year:

2009

Language:

english

File:

PDF, 991 KB

english, 2009

7

UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text

Dina Demner-Fushman, James G. Mork, Sonya E. Shooshan, Alan R. Aronson

Journal:

Journal of Biomedical Informatics

Year:

2010

Language:

english

File:

PDF, 290 KB

english, 2010

8

General recipe for designing photonic crystal cavities

Englund, Dirk, Fushman, Ilya, Vučković, Jelena

Journal:

Year:

2005

Language:

english

File:

PDF, 1.06 MB

english, 2005

9

Multimodal biomedical image indexing and retrieval using descriptive text and global feature mapping

Simpson, Matthew S., Demner-Fushman, Dina, Antani, Sameer K., Thoma, George R.

Journal:

Information Retrieval

Year:

2014

Language:

english

File:

PDF, 878 KB

english, 2014

10

The Effect of Finite Sampling on the Determination of Orientational Properties: A Theoretical Treatment with Application to Interatomic Vectors in Proteins

Fushman, David, Ghose, Ranajeet, Cowburn, David

Journal:

Journal of the American Chemical Society

Year:

2000

Language:

english

File:

PDF, 135 KB

english, 2000

11

Recovering a Representative Conformational Ensemble from Underdetermined Macromolecular Structural Data

Berlin, Konstantin, Castañeda, Carlos A., Schneidman-Duhovny, Dina, Sali, Andrej, Nava-Tudela, Alfredo, Fushman, David

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 4.01 MB

english, 2013

12

Literature-based biomedical image classification and retrieval

Simpson, Matthew S., You, Daekeun, Rahman, Md Mahmudur, Xue, Zhiyun, Demner-Fushman, Dina, Antani, Sameer, Thoma, George

Journal:

Computerized Medical Imaging and Graphics

Year:

2015

Language:

english

File:

PDF, 1.89 MB

english, 2015

13

Comparative effectiveness research designs: an analysis of terms and coverage in Medical Subject Headings (MeSH) and Emtree

Bekhuis, Tanja, Demner-Fushman, Dina, Crowley, Rebecca S.

Journal:

Journal of the Medical Library Association JMLA

Year:

2013

Language:

english

File:

PDF, 920 KB

english, 2013

14

Impact of Cl− and Na+ ions on simulated structure and dynamics of βARK1 PH domain

Stefania Pfeiffer, David Fushman, David Cowburn

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 303 KB

english, 1999

15

Backbone dynamics of proteins studied by two-dimensional heteronuclear NMR spectroscopy and molecular dynamics simulations

David Fushman, Rüdiger Weisemann, Harald Thüring, Oliver Ohlenschläger, Heinz Rüterjans

Journal:

International Journal of Quantum Chemistry

Year:

1996

Language:

english

File:

PDF, 883 KB

english, 1996

16

Segmental Isotopic Labeling of Ubiquitin Chains To Unravel Monomer-Specific Molecular Behavior

Dr. Carlos A. Castañeda, Liat Spasser, Dr. Sudhir N. Bavikar, Prof. Ashraf Brik, Prof. David Fushman

Journal:

Angewandte Chemie

Year:

2011

Language:

english

File:

PDF, 882 KB

english, 2011

17

Segmental Isotopic Labeling of Ubiquitin Chains To Unravel Monomer-Specific Molecular Behavior

Dr. Carlos A. Castañeda, Liat Spasser, Dr. Sudhir N. Bavikar, Prof. Ashraf Brik, Prof. David Fushman

Journal:

Angewandte Chemie International Edition

Year:

2011

Language:

english

File:

PDF, 865 KB

english, 2011

18

Ultrahigh molecular-weight polyethylene–chalk composites resulting from in situ polymerization

V. M. Gorelik, E. A. Fushman, V. A. Topolkaraev, F. S. Dyachkovsky, L. A. Shestenina, L. F. Borisova, V. I. Sergeev

Journal:

Journal of Applied Polymer Science

Year:

1990

Language:

english

File:

PDF, 1.18 MB

english, 1990

19

Long-Lived States to Monitor Protein Unfolding by Proton NMR

Aurélien Bornet, Dr. Puneet Ahuja, Dr. Riddhiman Sarkar, Laetitia Fernandes, Sonia Hadji, Shirley Y. Lee, Dr. Aydin Haririnia, Prof. David Fushman, Prof. Geoffrey Bodenhausen, Prof. Paul R. Vasos

Journal:

Year:

2011

Language:

english

File:

PDF, 970 KB

english, 2011

20

Cover Picture: Long-Lived States to Monitor Protein Unfolding by Proton NMR (ChemPhysChem 15/2011)

Aurélien Bornet, Dr. Puneet Ahuja, Dr. Riddhiman Sarkar, Laetitia Fernandes, Sonia Hadji, Shirley Y. Lee, Dr. Aydin Haririnia, Prof. David Fushman, Prof. Geoffrey Bodenhausen, Prof. Paul R. Vasos

Journal:

Year:

2011

File:

PDF, 1.10 MB

2011

21

Direct measurement of the transverse and longitudinal 15N chemical shift anisotropy–dipolar cross-correlation rate constants using 1H-coupled HSQC spectra

Jennifer B. Hall, David Fushman

Journal:

Magnetic Resonance in Chemistry

Year:

2003

Language:

english

File:

PDF, 149 KB

english, 2003

22

Analysis of interdomain dynamics in a two-domain protein using residual dipolar couplings together with 15N relaxation data

Yaroslav Ryabov, David Fushman

Journal:

Magnetic Resonance in Chemistry

Year:

2006

Language:

english

File:

PDF, 1.70 MB

english, 2006

23

The Virtual NMR Spectrometer: A Computer Program for Efficient Simulation of NMR Experiments Involving Pulsed Field Gradients

Peter Nicholas, David Fushman, Vladislav Ruchinsky, David Cowburn

Journal:

Journal of Magnetic Resonance

Year:

2000

Language:

english

File:

PDF, 177 KB

english, 2000

24

Study of exchange reactions in soluble systems of the Ziegler-Natta type

L.N. Sosnovskaja, E.A. Fushman, L.F. Borisova, N. Shupik

Journal:

Journal of Molecular Catalysis

Year:

1980

Language:

english

File:

PDF, 703 KB

english, 1980

25

Study of the structure and reactivity of the complexes of cyclopentadienyl titanium derivatives with alkylaluminium halides

V.E. Lvovsky, E.A. Fushman, F.S. Dyachkovsky

Journal:

Journal of Molecular Catalysis

Year:

1980

Language:

english

File:

PDF, 839 KB

english, 1980

26

Condensed E. coli cultures for highly efficient production of proteins containing unnatural amino acids

Jia Liu, Carlos A. Castañeda, Bryan J. Wilkins, David Fushman, T. Ashton Cropp

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2010

Language:

english

File:

PDF, 482 KB

english, 2010

27

Polyubiquitin chains: polymeric protein signals

Cecile M Pickart, David Fushman

Journal:

Current Opinion in Chemical Biology

Year:

2004

Language:

english

File:

PDF, 540 KB

english, 2004

28

An image feature-based approach to automatically find images for application to clinical decision support

R. Joe Stanley, Soumya De, Dina Demner-Fushman, Sameer Antani, George R. Thoma

Journal:

Computerized Medical Imaging and Graphics

Year:

2011

Language:

english

File:

PDF, 565 KB

english, 2011

29

Improvement and analysis of computational methods for prediction of residual dipolar couplings

Konstantin Berlin, Dianne P. O’Leary, David Fushman

Journal:

Journal of Magnetic Resonance

Year:

2009

Language:

english

File:

PDF, 412 KB

english, 2009

30

DFT study of the activation of dimethylzirconocenes by aluminium-containing activators

Leila Yu. Ustynyuk, Elga A. Fushman, Svetlana S. Lalayan

Journal:

Mendeleev Communications

Year:

2010

Language:

english

File:

PDF, 235 KB

english, 2010

31

Determining domain orientation in macromolecules by using spin-relaxation and residual dipolar coupling measurements

David Fushman, Ranjani Varadan, Michael Assfalg, Olivier Walker

Journal:

Progress in Nuclear Magnetic Resonance Spectroscopy

Year:

2004

Language:

english

File:

PDF, 1.07 MB

english, 2004

32

Interactive publication: The document as a research tool

George R. Thoma, Glenn Ford, Sameer Antani, Dina Demner-Fushman, Michael Chung, Matthew Simpson

Journal:

Web Semantics: Science, Services and Agents on the World Wide Web

Year:

2010

Language:

english

File:

PDF, 525 KB

english, 2010

33

Various strategies of using residual dipolar couplings in NMR-driven protein docking: Application to Lys48-linked di-ubiquitin and validation against 15N-relaxation data

Aalt D.J. van Dijk, David Fushman, Alexandre M.J.J. Bonvin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 527 KB

english, 2005

34

Interdomain mobility in di-ubiquitin revealed by NMR

Yaroslav Ryabov, David Fushman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 512 KB

english, 2006

35

Fast approximations of the rotational diffusion tensor and their application to structural assembly of molecular complexes

Konstantin Berlin, Dianne P. O'Leary, David Fushman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 2.75 MB

english, 2011

36

Kinetic Properties of the Two-Level Systems in Glasses with Account of Tunneling

Journal:

physica status solidi (b)

Year:

1985

Language:

english

File:

PDF, 628 KB

english, 1985

37

Saturation of Tunneling States in Glasses in the Presence of the Phonon Bottleneck

Journal:

physica status solidi (b)

Year:

1985

Language:

english

File:

PDF, 224 KB

english, 1985

38

Probing the interaction between a single quantum dot and a photonic crystal cavity

Ilya Fushman, Dirk Englund, Andrei Faraon, Jelena Vuckovic

Journal:

physica status solidi (c)

Year:

2008

Language:

english

File:

PDF, 732 KB

english, 2008

39

Backbone dynamics of ribonuclease T1 and its complex with 2′GMP studied by two-dimensional heteronuclear NMR spectroscopy

David Fushman, Rüdiger Weisemann, Harald Thüring, Heinz Rüterjans

Journal:

Journal of Biomolecular NMR

Year:

1994

Language:

english

File:

PDF, 1.30 MB

english, 1994

40

Methods for automatically evaluating answers to complex questions

Jimmy Lin, Dina Demner-Fushman

Journal:

Information Retrieval

Year:

2006

Language:

english

File:

PDF, 521 KB

english, 2006

41

Measurement of15N relaxation in deuterated amide groups in proteins using direct nitrogen detection

Paul R. Vasos, Jennifer B. Hall, Rainer Kümmerle, David Fushman

Journal:

Journal of Biomolecular NMR

Year:

2006

Language:

english

File:

PDF, 391 KB

english, 2006

42

Density functional calculations of15N chemical shifts in solvated dipeptides

Ling Cai, David Fushman, Daniel S. Kosov

Journal:

Journal of Biomolecular NMR

Year:

2008

Language:

english

File:

PDF, 439 KB

english, 2008

43

Density functional calculations of chemical shielding of backbone15N in helical residues of protein G

Ling Cai, David Fushman, Daniel S. Kosov

Journal:

Journal of Biomolecular NMR

Year:

2009

Language:

english

File:

PDF, 325 KB

english, 2009

44

Density functional calculations of backbone15N shielding tensors in beta-sheet and turn residues of protein G

Ling Cai, Daniel S. Kosov, David Fushman

Journal:

Journal of Biomolecular NMR

Year:

2011

Language:

english

File:

PDF, 649 KB

english, 2011

45

1H,13C, and15N resonance assignment of the ubiquitin-like domain from Dsk2p

Tony Chen, Daoning Zhang, Yulia Matiuhin, Michael Glickman, David Fushman

Journal:

Biomolecular NMR Assignments

Year:

2008

Language:

english

File:

PDF, 254 KB

english, 2008

46

Polymerization of ethylene with the system (C5H5)2TiEtCl-AlEtCl2

L.F. Borisova, E.A. Fushman, E.I. Vizen, N.M. Chirkov

Journal:

European Polymer Journal

Year:

1973

Language:

english

File:

PDF, 481 KB

english, 1973

47

DFT study of dimethylzirconocene activation by one or two Al(C6F5)3 molecules, formation of ion pairs and their reactions with ethylene

Leila Yu. Ustynyuk, Elga A. Fushman

Journal:

Mendeleev Communications

Year:

2009

Language:

english

File:

PDF, 348 KB

english, 2009

48

Peptide chemical ligation inside living cells: in vivo generation of a circular protein domain

Julio A Camarero, David Fushman, David Cowburn, Tom W Muir

Journal:

Bioorganic & Medicinal Chemistry

Year:

2001

Language:

english

File:

PDF, 222 KB

english, 2001

49

Atom-by-atom analysis of global downhill protein folding

Sadqi, Mourad, Fushman, David, Muñoz, Victor

Journal:

Year:

2006

Language:

english

File:

PDF, 483 KB

english, 2006

50

Structural Biology: Analysis of 'downhill' protein folding; Analysis of protein-folding cooperativity (Reply)

Sadqi, Mourad, Fushman, David, Muñoz, Victor

Journal:

Year:

2007

Language:

english

File:

PDF, 333 KB

english, 2007

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