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51

sbv IMPROVER Diagnostic Signature Challenge

Hoeng, Julia, Stolovitzky, Gustavo, Peitsch, Manuel C

Journal:

Systems Biomedicine

Year:

2013

Language:

english

File:

PDF, 171 KB

english, 2013

52

sbv IMPROVER Diagnostic Signature Challenge

Norel, Raquel, Bilal, Erhan, Conrad-Chemineau, Nathalie, Bonneau, Richard, de la Fuente, Alberto, Jurisica, Igor, Marbach, Daniel, Meyer, Pablo, Rice, J Jeremy, Tuller, Tamir, Stolovitzky, Gustavo

Journal:

Systems Biomedicine

Year:

2013

Language:

english

File:

PDF, 3.36 MB

english, 2013

53

Dynamics of DNA translocation in a solid-state nanopore immersed in aqueous glycerol

Luan, Binquan, Wang, Deqiang, Zhou, Ruhong, Harrer, Stefan, Peng, Hongbo, Stolovitzky, Gustavo

Journal:

Year:

2012

Language:

english

File:

PDF, 998 KB

english, 2012

54

sbv IMPROVER Diagnostic Signature Challenge

Rhrissorrakrai, Kahn, Rice, J Jeremy, Boue, Stephanie, Talikka, Marja, Bilal, Erhan, Martin, Florian, Meyer, Pablo, Norel, Raquel, Xiang, Yang, Stolovitzky, Gustavo, Hoeng, Julia, Peitsch, Manuel C

Journal:

Systems Biomedicine

Year:

2013

Language:

english

File:

PDF, 1.15 MB

english, 2013

55

Spatial localization of the first and last enzymes effectively connects active metabolic pathways in bacteria

Meyer, Pablo, Cecchi, Guillermo, Stolovitzky, Gustavo

Journal:

BMC Systems Biology

Year:

2014

Language:

english

File:

PDF, 1.72 MB

english, 2014

56

Extended Kalman Filter for Estimation of Parameters in Nonlinear State-Space Models of Biochemical Networks

Sun, Xiaodian, Jin, Li, Xiong, Momiao, Stolovitzky, Gustavo

Journal:

Year:

2008

Language:

english

File:

PDF, 453 KB

english, 2008

57

Regulating the Transport of DNA through Biofriendly Nanochannels in a Thin Solid Membrane

Wang, Deqiang, Harrer, Stefan, Luan, Binquan, Stolovitzky, Gustavo, Peng, Hongbo, Afzali-Ardakani, Ali

Journal:

Scientific Reports

Year:

2014

Language:

english

File:

PDF, 1.51 MB

english, 2014

58

[ACM Press the fourth annual international conference - Tokyo, Japan (2000..-..)] Proceedings of the fourth annual international conference on Computational molecular biology - RECOMB '00 - Systematic and automated discovery of patterns in PROSITE families

Hart, Reece, Royyuru, Ajay K., Stolovitzky, Gustavo, Califano, Andrea

Year:

2000

Language:

english

File:

PDF, 743 KB

english, 2000

59

Preface: RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2014 Special Issue

Califano, AnDrea, Kellis, Manolis, Stolovitzky, Gustavo

Journal:

Journal of Computational Biology

Year:

2015

Language:

english

File:

PDF, 37 KB

english, 2015

60

Revealing strengths and weaknesses of methods for gene network inference

Daniel Marbach, Robert J. Prill, Thomas Schaffter, Claudio Mattiussi, Dario Floreano, Gustavo Stolovitzky and Charles R Cantor

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.58 MB

english, 2010

61

Crowdsourcing biomedical research: leveraging communities as innovation engines

Saez-Rodriguez, Julio, Costello, James C., Friend, Stephen H., Kellen, Michael R., Mangravite, Lara, Meyer, Pablo, Norman, Thea, Stolovitzky, Gustavo

Journal:

Nature Reviews Genetics

Year:

2016

Language:

english

File:

PDF, 659 KB

english, 2016

62

Mnemonics for variability: Remembering food delay.

Brunner, Dani, Fairhurst, Stephen, Stolovitzky, Gustavo, Gibbon, John

Journal:

Journal of Experimental Psychology: Animal Behavior Processes

Year:

1997

Language:

english

File:

PDF, 1.66 MB

english, 1997

63

Identification of a Global Gene Expression Signature of B-Chronic Lymphocytic Leukemia1 1 Mayo Comprehensive Cancer Center , National Cancer Institute CA91542 ( awarded to N . E . Kay ), and generous philanthropic support provided Identification of a Glob

Spencer, Edson, Jelinek, Diane F, Tschumper, Renee C, Stolovitzky, Gustavo a, Iturria, Stephen J, Tu, Yuhai, Lepre, Jorge, Shah, Nigam, Kay, Neil E

Journal:

Molecular cancer research : MCR

Year:

2003

Language:

english

File:

PDF, 530 KB

english, 2003

64

Bioinformatics: The Machine Learning Approach Bioinformatics: The Machine Learning Approach , Pierre Baldi and Søren Brunak MIT Press, Cambridge, Mass., 2001 [1998]. $49.95 (452 pp.). ISBN 0-262-02506-X

Stolovitzky, Gustavo A.

Journal:

Year:

2002

Language:

english

File:

PDF, 94 KB

english, 2002

65

Broken flow symmetry explains the dynamics of small particles in deterministic lateral displacement arrays

Kim, Sung-Cheol, Wunsch, Benjamin H., Hu, Huan, Smith, Joshua T., Austin, Robert H., Stolovitzky, Gustavo

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 7.84 MB

english, 2017

66

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (3 – 7 January 2018)] Biocomputing 2018 - Characterization of drug-induced splicing complexity in prostate cancer cell line using long read technology

Chen, Xintong, Houten, Sander, Allette, Kimaada, Sebra, Robert P., Stolovitzky, Gustavo, Losic, Bojan

Language:

english

File:

PDF, 1.92 MB

english

67

A flexible ontology for inference of emergent whole cell function from relationships between subcellular processes

Hansen, Jens, Meretzky, David, Woldesenbet, Simeneh, Stolovitzky, Gustavo, Iyengar, Ravi

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 3.43 MB

english, 2017

68

Bio-inspired silicon nanospikes fabricated by metal-assisted chemical etching for antibacterial surfaces

Hu, Huan, Siu, Vince S., Gifford, Stacey M., Kim, Sungcheol, Lu, Minhua, Meyer, Pablo, Stolovitzky, Gustavo A.

Journal:

Applied Physics Letters

Year:

2017

Language:

english

File:

PDF, 3.32 MB

english, 2017

69

A Bayesian Network Driven Approach to Model the Transcriptional Response to Nitric Oxide in Saccharomyces cerevisiae

Zhu, Jingchun, Jambhekar, Ashwini, Sarver, Aaron, DeRisi, Joseph, Stolovitzky, Gustavo

Journal:

Year:

2006

Language:

english

File:

PDF, 381 KB

english, 2006

70

Optimal Signal Processing in Small Stochastic Biochemical Networks

Ziv, Etay, Nemenman, Ilya, Wiggins, Chris H., Stolovitzky, Gustavo

Journal:

Year:

2007

Language:

english

File:

PDF, 711 KB

english, 2007

71

The Information Coded in the Yeast Response Elements Accounts for Most of the Topological Properties of Its Transcriptional Regulation Network

Balcan, Duygu, Kabakçıoğlu, Alkan, Mungan, Muhittin, Erzan, Ayşe, Stolovitzky, Gustavo

Journal:

Year:

2007

Language:

english

File:

PDF, 334 KB

english, 2007

72

Topological Analysis of MAPK Cascade for Kinetic ErbB Signaling

Nakakuki, Takashi, Yumoto, Noriko, Naka, Takashi, Shirouzu, Mikako, Yokoyama, Shigeyuki, Hatakeyama, Mariko, Stolovitzky, Gustavo

Journal:

Year:

2008

Language:

english

File:

PDF, 651 KB

english, 2008

73

Reconstitution of Mdm2-Dependent Post-Translational Modifications of p53 in Yeast

Di Ventura, Barbara, Funaya, Charlotta, Antony, Claude, Knop, Michael, Serrano, Luis, Stolovitzky, Gustavo

Journal:

Year:

2008

Language:

english

File:

PDF, 536 KB

english, 2008

74

Metabolic Dynamics in Skeletal Muscle during Acute Reduction in Blood Flow and Oxygen Supply to Mitochondria: In-Silico Studies Using a Multi-Scale, Top-Down Integrated Model

Dash, Ranjan K., Li, Yanjun, Kim, Jaeyeon, Beard, Daniel A., Saidel, Gerald M., Cabrera, Marco E., Stolovitzky, Gustavo

Journal:

Year:

2008

Language:

english

File:

PDF, 677 KB

english, 2008

75

Reverse Engineering Time Discrete Finite Dynamical Systems: A Feasible Undertaking?

Delgado-Eckert, Edgar, Stolovitzky, Gustavo

Journal:

Year:

2009

Language:

english

File:

PDF, 289 KB

english, 2009

76

Reassortment Patterns in Swine Influenza Viruses

Khiabanian, Hossein, Trifonov, Vladimir, Rabadan, Raul, Stolovitzky, Gustavo

Journal:

Year:

2009

Language:

english

File:

PDF, 2.94 MB

english, 2009

77

Accurate and Reliable Cancer Classification Based on Probabilistic Inference of Pathway Activity

Su, Junjie, Yoon, Byung-Jun, Dougherty, Edward R., Stolovitzky, Gustavo

Journal:

Year:

2009

Language:

english

File:

PDF, 698 KB

english, 2009

78

Front Instabilities and Invasiveness of Simulated 3D Avascular Tumors

Poplawski, Nikodem J., Shirinifard, Abbas, Agero, Ubirajara, Gens, J. Scott, Swat, Maciej, Glazier, James A., Stolovitzky, Gustavo

Journal:

Year:

2010

Language:

english

File:

PDF, 1.20 MB

english, 2010

79

When the Optimal Is Not the Best: Parameter Estimation in Complex Biological Models

Fernández Slezak, Diego, Suárez, Cecilia, Cecchi, Guillermo A., Marshall, Guillermo, Stolovitzky, Gustavo, Flower, Darren R.

Journal:

Year:

2010

Language:

english

File:

PDF, 2.13 MB

english, 2010

80

Simulation Studies as Designed Experiments: The Comparison of Penalized Regression Models in the “Large p, Small n” Setting

Chaibub Neto, Elias, Bare, J. Christopher, Margolin, Adam A., Stolovitzky, Gustavo

Journal:

Year:

2014

Language:

english

File:

PDF, 1.09 MB

english, 2014

81

Noise-Driven Causal Inference in Biomolecular Networks

Prill, Robert J., Vogel, Robert, Cecchi, Guillermo A., Altan-Bonnet, Grégoire, Stolovitzky, Gustavo, de la Fuente, Alberto

Journal:

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015

82

Dynamics of collective performance in collaboration networks

Amelkin, Victor, Askarisichani, Omid, Kim, Young Ji, Malone, Thomas W., Singh, Ambuj K., Stolovitzky, Gustavo

Journal:

Year:

2018

Language:

english

File:

PDF, 6.57 MB

english, 2018

83

Faithfulness-boost effect: Loyal teammate selection correlates with skill acquisition improvement in online games

Landfried, Gustavo, Fernández Slezak, Diego, Mocskos, Esteban, Stolovitzky, Gustavo

Journal:

Year:

2019

File:

PDF, 5.74 MB

2019

84

ChIP-on-chip significance analysis reveals large-scale binding and regulation by human transcription factor oncogenes

Margolin, Adam, Palomero, Teresa, Sumazin, Pavel, Califano, Andrea, Ferrando, Adolfo, Stolovitzky, Gustavo

Journal:

Nature Precedings

Year:

2007

Language:

english

File:

PDF, 878 KB

english, 2007

85

NeTFactor, a framework for identifying transcriptional regulators of gene expression-based biomarkers

Ahsen, Mehmet Eren, Chun, Yoojin, Grishin, Alexander, Grishina, Galina, Stolovitzky, Gustavo, Pandey, Gaurav, Bunyavanich, Supinda

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 2.15 MB

english, 2019

86

ChIP-on-chip significance analysis reveals large-scale binding and regulation by human transcription factor oncogenes

Margolin, Adam, Palomero, Teresa, Sumazin, Pavel, Califano, Andrea, Ferrando, Adolfo, Stolovitzky, Gustavo

Journal:

Nature Precedings

Year:

2007

File:

PDF, 878 KB

2007

87

NeTFactor, a framework for identifying transcriptional regulators of gene expression-based biomarkers

Ahsen, Mehmet Eren, Chun, Yoojin, Grishin, Alexander, Grishina, Galina, Stolovitzky, Gustavo, Pandey, Gaurav, Bunyavanich, Supinda

Journal:

Scientific Reports

Year:

2019

File:

PDF, 2.15 MB

2019

88

Deterministic Lateral Displacement: Challenges and Perspectives

Hochstetter, Axel, Vernekar, Rohan, Austin, Robert H., Becker, Holger, Beech, Jason P., Fedosov, Dmitry A., Gompper, Gerhard, Kim, Sung-Cheol, Smith, Joshua T., Stolovitzky, Gustavo, Tegenfeldt, Jonas

Journal:

Year:

2020

File:

PDF, 1.74 MB

2020