Garegin A. Papoian: search on Z-Library

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51

Remarkable structural transformations of actin bundles are driven by their initial polarity, motor activity, crosslinking, and filament treadmilling

Chandrasekaran, Aravind, Upadhyaya, Arpita, Papoian, Garegin A., Cui, Qiang

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.58 MB

english, 2019

52

Protein fluxes along the filopodium as a framework for understanding the growth-retraction dynamics

Zhuravlev, Pavel I., Papoian, Garegin A.

Journal:

Cell Adhesion & Migration

Year:

2011

Language:

english

File:

PDF, 1.67 MB

english, 2011

53

Multiscale Stochastic Reaction–Diffusion Modeling: Application to Actin Dynamics in Filopodia

Radek Erban, Mark B. Flegg, Garegin A. Papoian

Journal:

Bulletin of Mathematical Biology

Year:

2014

Language:

english

File:

PDF, 905 KB

english, 2014

54

Myosin Motor Dynamics in Filopodia

Zhuravlev, Pavel I., Minakova, Maria, Lan, Yueheng, Papoian, Garegin A.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 36 KB

english, 2011

55

Counterion Atmosphere and Hydration Patterns near a Nucleosome Core Particle

Materese, Christopher K., Savelyev, Alexey, Papoian, Garegin A.

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 3.11 MB

english, 2009

56

Demonstrating aspects of multiscale modeling by studying the permeation pathway of the human ZnT2 zinc transporter

Golan, Yarden, Alhadeff, Raphael, Glaser, Fabian, Ganoth, Assaf, Warshel, Arieh, Assaraf, Yehuda G., Papoian, Garegin A.

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 8.67 MB

english, 2018

57

Energy Landscape Analyses of Disordered Histone Tails Reveal Special Organization of Their Conformational Dynamics

Potoyan, Davit A., Papoian, Garegin A.

Journal:

Journal of the American Chemical Society

Year:

2011

Language:

english

File:

PDF, 3.63 MB

english, 2011

58

Polyelectrolytes in biology and soft matter

Rubinstein, Michael, Papoian, Garegin A.

Journal:

Year:

2012

Language:

english

File:

PDF, 105 KB

english, 2012

59

Structural Heterogeneity and Dynamics of the Unfolded Ensemble

Echeverria, Ignacia, Papoian, Garegin A.

Journal:

Israel Journal of Chemistry

Year:

2014

Language:

english

File:

PDF, 889 KB

english, 2014

60

Hypervalenzbindung in einer, zwei und drei Dimensionen: Erweiterung des Zintl-Klemm-Konzepts auf nichtklassische elektronenreiche Netze

Garegin A. Papoian, Roald Hoffmann

Journal:

Angewandte Chemie

Year:

2000

Language:

german

File:

PDF, 1.82 MB

german, 2000

61

Reverse-engineering of biochemical reaction networks from spatio-temporal correlations of fluorescence fluctuations

Natsuki Tanaka, Garegin A. Papoian

Journal:

Journal of Theoretical Biology

Year:

2010

Language:

english

File:

PDF, 1.29 MB

english, 2010

62

Molecular Renormalization Group Coarse-Graining of Polymer Chains: Application to Double-Stranded DNA

Savelyev, Alexey, Papoian, Garegin A.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 292 KB

english, 2009

63

Characterizing the Binding Landscape Around DNA: Is DNA a Slide?

Echeverria, Ignacia, Papoian, Garegin A.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 40 KB

english, 2015

64

Structural and Dynamic Analysis on Disordered H4 Histone Tail by Modified AWSEM-MD

Wu, Hao, Papoian, Garegin

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 40 KB

english, 2015

65

Deconstructing the Native State: Energy Landscapes, Function, and Dynamics of Globular Proteins

Zhuravlev, Pavel I., Materese, Christopher Kroboth, Papoian, Garegin A.

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 3.83 MB

english, 2009

66

Energy Landscape Analysis Reveals Residual Order in Histone Tail Dynamics

Potoyan, Davit, Papoian, Garegin

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 37 KB

english, 2010

67

AWSEM-MD: Coarse-Grained Protein Structure Prediction using Physical Potentials and Bioinformatically Based Local Structure Biasing

Davtyan, Aram, Zheng, Weihua, Schafer, Nicholas, Wolynes, Peter, Papoian, Garegin

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 36 KB

english, 2012

68

DNA Exit Ramps Are Revealed in the Binding Landscapes Obtained from Simulations in Helical Coordinates

Echeverria, Ignacia, Papoian, Garegin A., Briggs, James M.

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 2.11 MB

english, 2015

69

The interplay between discrete noise and nonlinear chemical kinetics in a signal amplification cascade

Lan, Yueheng, Papoian, Garegin A.

Journal:

The Journal of Chemical Physics

Year:

2006

Language:

english

File:

PDF, 249 KB

english, 2006

70

Intrinsic elasticity of nucleosomes is encoded by histone variants and calibrated by their binding partners

Melters, DaniÃ«l P., Pitman, Mary, Rakshit, Tatini, Dimitriadis, Emilios K., Bui, Minh, Papoian, Garegin A., Dalal, Yamini

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

File:

PDF, 1.81 MB

2019

71

Is DNA’s Rigidity Dominated by Electrostatic or Nonelectrostatic Interactions?

Savelyev, Alexey, Materese, Christopher K., Papoian, Garegin A.

Journal:

Journal of the American Chemical Society

Year:

2011

Language:

english

File:

PDF, 1.63 MB

english, 2011

72

The Stochastic Dynamics of Filopodial Growth

Lan, Yueheng, Papoian, Garegin A.

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 857 KB

english, 2008

73

Electron-Rich Rods as Building Blocks for Sb Strips and Te Sheets

Papoian, Garegin, Hoffmann, Roald

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 240 KB

english, 2001

74

Inter-DNA Electrostatics from Explicit Solvent Molecular Dynamics Simulations

Savelyev, Alexey, Papoian, Garegin A.

Journal:

Journal of the American Chemical Society

Year:

2007

Language:

english

File:

PDF, 109 KB

english, 2007

75

A Comparative Theoretical Study of the Hydrogen, Methyl, and Ethyl Chemisorption on the Pt(111) Surface

Papoian, Garegin, Nørskov, Jens K., Hoffmann, Roald

Journal:

Journal of the American Chemical Society

Year:

2000

Language:

english

File:

PDF, 626 KB

english, 2000

76

Concerted Dihedral Rotations Give Rise to Internal Friction in Unfolded Proteins

Echeverria, Ignacia, Makarov, Dmitrii E., Papoian, Garegin A.

Journal:

Journal of the American Chemical Society

Year:

2014

Language:

english

File:

PDF, 1.02 MB

english, 2014

77

Stochastic Resonant Signaling in Enzyme Cascades

Lan, Yueheng, Papoian, Garegin A.

Journal:

Physical Review Letters

Year:

2007

Language:

english

File:

PDF, 162 KB

english, 2007

78

The Binding Landscapes of the H3/H4 and CENP-A/H4 Dimers

Zhao, Haiqing, Dalal, Yamini, Papoian, Garegin A.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 41 KB

english, 2015

79

Mechanochemical Simulations of Integrated Membrane-Cytoskeletal Systems

Ni, Haoran, Papoian, Garegin A.

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 41 KB

english, 2019

80

The Association Landscape of Ubiquitin Dimerization

Zhao, Haiqing, Fushman, David, Papoian, Garegin A.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 45 KB

english, 2015

81

Minimal Cylinder Analysis Reveals the Mechanical Properties of Oncogenic Nucleosomes

Pitman, Mary, Dalal, Yamini, Papoian, Garegin A.

Journal:

Biophysical Journal

Year:

2020

Language:

english

File:

PDF, 852 KB

english, 2020

82

Electron-Rich Bonding and the Importance of s,p Mixing as One Moves Across a Period: A Lesson from the LiSn System

Ienco, Andrea, Hoffmann, Roald, Papoian, Garegin

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 172 KB

english, 2001

83

Cenp-A Hijacks the Histone Chaperone Network in Cancer--Computational Insights

Pitman, Mary, Dalal, Yamini, Papoian, Garegin A.

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 42 KB

english, 2019

84

Evolution of complex probability distributions in enzyme cascades

Yueheng Lan, Garegin A. Papoian

Journal:

Journal of Theoretical Biology

Year:

2007

Language:

english

File:

PDF, 369 KB

english, 2007

85

Molecular noise of capping protein binding induces macroscopic instability in filopodial dynamics

Zhuravlev, Pavel I., Papoian, Garegin A.

Journal:

Proceedings of the National Academy of Sciences

Year:

2009

Language:

english

File:

PDF, 1.18 MB

english, 2009

86

MEDYAN: Mechanochemical Simulations of Contraction and Polarity Alignment in Actomyosin Networks

Popov, Konstantin, Komianos, James, Papoian, Garegin A., Ermentrout, Bard

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 7.38 MB

english, 2016

87

Recent successes in coarse-grained modeling of DNA

Davit A. Potoyan, Alexey Savelyev, Garegin A. Papoian

Journal:

Wiley Interdisciplinary Reviews: Computational Molecular Science

Year:

2012

Language:

english

File:

PDF, 709 KB

english, 2012

88

Mechano-Chemical Feedbacks Play a Major Role in Regulating Actin Mesh Growth in Lamellipodial Protrusions

Hu, Longhua, Papoian, Garegin A.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 32 KB

english, 2010

89

Hypervalent Bonding in One, Two, and Three Dimensions: Extending the Zintl–Klemm Concept to Nonclassical Electron-Rich Networks

Garegin A. Papoian, Roald Hoffmann

Journal:

Angewandte Chemie International Edition

Year:

2000

Language:

english

File:

PDF, 1.86 MB

english, 2000

90

The physics and bioinformatics of binding and folding—an energy landscape perspective

Garegin A. Papoian, Peter G. Wolynes

Journal:

Year:

2003

Language:

english

File:

PDF, 1.13 MB

english, 2003

91

Nonequilibrium Water Transport in a Nonionic Microemulsion System

Minakova, Maria, Savelyev, Alexey, Papoian, Garegin A.

Journal:

Journal of Physical Chemistry B

Year:

2011

Language:

english

File:

PDF, 3.86 MB

english, 2011

92

Steric Effects Induce Geometric Remodeling of Actin Bundles in Filopodia

Dobramysl, Ulrich, Papoian, Garegin A., Erban, Radek

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 731 KB

english, 2016

93

Exploring the Free Energy Landscape of Nucleosomes

Zhang, Bin, Zheng, Weihua, Papoian, Garegin A., Wolynes, Peter G

Journal:

Journal of the American Chemical Society

Year:

2016

Language:

english

File:

PDF, 3.02 MB

english, 2016

94

The Oligomerization Landscape of Histones

Zhao, Haiqing, Winogradoff, David, Dalal, Yamini, Papoian, Garegin A.

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 1.63 MB

english, 2019

95

Molecular Transport Modulates the Adaptive Response of Branched Actin Networks to an External Force

Hu, Longhua, Papoian, Garegin A.

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 1.76 MB

english, 2013

96

The Acetylation Landscape of the H4 Histone Tail

Winogradoff, David, Echeverria, Ignacia, Papoian, Garegin

Journal:

Biophysical Journal

Year:

2015

File:

PDF, 40 KB

2015

97

Computational Study of Abl Pathway Based Axonal Guidance

Chandrasekaran, Aravind, Papoian, Garegin A., Giniger, Edward

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 40 KB

english, 2019

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