Gautam A. Dantas: search on Z-Library

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1

Close Encounters of Three Kinds: Bacteriophages, Commensal Bacteria, and Host Immunity

Keen, Eric C., Dantas, Gautam

Journal:

Trends in Microbiology

Year:

2018

Language:

english

File:

PDF, 2.54 MB

english, 2018

2

Bacterial phylogeny structures soil resistomes across habitats

Forsberg, Kevin J., Patel, Sanket, Gibson, Molly K., Lauber, Christian L., Knight, Rob, Fierer, Noah, Dantas, Gautam

Journal:

Year:

2014

Language:

english

File:

PDF, 3.33 MB

english, 2014

3

Tackling antibiotic resistance

Bush, Karen, Courvalin, Patrice, Dantas, Gautam, Davies, Julian, Eisenstein, Barry, Huovinen, Pentti, Jacoby, George A., Kishony, Roy, Kreiswirth, Barry N., Kutter, Elizabeth

Journal:

Nature Reviews Microbiology

Year:

2011

Language:

english

File:

PDF, 131 KB

english, 2011

4

Missing Microbes: How the Overuse of Antibiotics is Fueling our Modern Plagues. By Martin J. Blaser. 288 pp. New York: Henry Holt and Company. 2014. $28.00 (cloth), $16.00 (paper), $14.99 (e-book).

Journal:

American Journal of Human Biology

Year:

2015

Language:

english

File:

PDF, 50 KB

english, 2015

5

Functional selections of soil metagenomes identify tolerance genes against lignocellulose-derived inhibitors

Forsberg, Kevin J., Patel, Sanket, Witt, Evan, Wang, Bin, Ellison, Tyler, Dantas, Gautam

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 949 KB

english, 2015

6

Next-generation approaches to understand and combat the antibiotic resistome

Crofts, Terence S., Gasparrini, Andrew J., Dantas, Gautam

Journal:

Nature Reviews Microbiology

Year:

2017

Language:

english

File:

PDF, 996 KB

english, 2017

7

Multiscale Evolutionary Dynamics of Host-Associated Microbiomes

Ferreiro, Aura, Crook, Nathan, Gasparrini, Andrew J., Dantas, Gautam

Journal:

Year:

2018

Language:

english

File:

PDF, 1.25 MB

english, 2018

8

Functional Characterization of Bacteria Isolated from Ancient Arctic Soil Exposes Diverse Resistance Mechanisms to Modern Antibiotics

Perron, Gabriel G., Whyte, Lyle, Turnbaugh, Peter J., Goordial, Jacqueline, Hanage, William P., Dantas, Gautam, Desai, Michael M., Brown, Sam Paul

Journal:

Year:

2015

Language:

english

File:

PDF, 1.94 MB

english, 2015

9

Spatiotemporal dynamics of multidrug resistant bacteria on intensive care unit surfaces

D’Souza, Alaric W., Potter, Robert F., Wallace, Meghan, Shupe, Angela, Patel, Sanket, Sun, Xiaoqing, Gul, Danish, Kwon, Jennie H., Andleeb, Saadia, Burnham, Carey-Ann D., Dantas, Gautam

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 3.52 MB

english, 2019

10

ChemInform Abstract: Synthesis of Polyazamacrocyclic Compounds via Modified Richman—Atkins Cyclization of β-Trimethylsilylethanesulfonamides.

Rebecca C. Hoye, Jack E. Richman, Gautam A. Dantas, Marissa F. Lightbourne, L. Scott Shinneman

Journal:

Year:

2001

File:

PDF, 33 KB

2001

11

1H,13C and15N Resonance Assignments of URNdesign, a Computationally Redesigned RRM Protein

Neil Dobson, Gautam Dantas, Gabriele Varani

Journal:

Journal of Biomolecular NMR

Year:

2005

Language:

english

File:

PDF, 197 KB

english, 2005

12

High-Resolution Structural Validation of the Computational Redesign of Human U1A Protein

Neil Dobson, Gautam Dantas, David Baker, Gabriele Varani

Journal:

Year:

2006

Language:

english

File:

PDF, 449 KB

english, 2006

13

Mis-translation of a Computationally Designed Protein Yields an Exceptionally Stable Homodimer: Implications for Protein Engineering and Evolution

Gautam Dantas, Alexander L. Watters, Bradley M. Lunde, Ziad M. Eletr, Nancy G. Isern, Toby Roseman, Jan Lipfert, Sebastian Doniach, Martin Tompa, Brian Kuhlman, Barry L. Stoddard, Gabriele Varani, Dav

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 1.15 MB

english, 2006

14

High-resolution Structural and Thermodynamic Analysis of Extreme Stabilization of Human Procarboxypeptidase by Computational Protein Design

Gautam Dantas, Colin Corrent, Steve L. Reichow, James J. Havranek, Ziad M. Eletr, Nancy G. Isern, Brian Kuhlman, Gabriele Varani, Ethan A. Merritt, David Baker

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.71 MB

english, 2007

15

Antibiotics and the resistant microbiome

Morten OA Sommer, Gautam Dantas

Journal:

Current Opinion in Microbiology

Year:

2011

Language:

english

File:

PDF, 626 KB

english, 2011

16

A Large Scale Test of Computational Protein Design: Folding and Stability of Nine Completely Redesigned Globular Proteins

Gautam Dantas, Brian Kuhlman, David Callender, Michelle Wong, David Baker

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.96 MB

english, 2003

17

Context matters — the complex interplay between resistome genotypes and resistance phenotypes

Gautam Dantas, Morten OA Sommer

Journal:

Current Opinion in Microbiology

Year:

2012

Language:

english

File:

PDF, 275 KB

english, 2012

18

Experimental Approaches for Defining Functional Roles of Microbes in the Human Gut

Dantas, Gautam, Sommer, Morten O.A., Degnan, Patrick H., Goodman, Andrew L.

Journal:

Annual Review of Microbiology

Year:

2013

Language:

english

File:

PDF, 473 KB

english, 2013

19

Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology

Gibson, Molly K, Forsberg, Kevin J, Dantas, Gautam

Journal:

The ISME Journal

Year:

2015

Language:

english

File:

PDF, 922 KB

english, 2015

20

Synthesis of Polyazamacrocyclic Compounds via Modified Richman−Atkins Cyclization of β-Trimethylsilylethanesulfonamides

Hoye, Rebecca C., Richman, Jack E., Dantas, Gautam A., Lightbourne, Marissa F., Shinneman, L. Scott

Journal:

Journal of Organic Chemistry

Year:

2001

Language:

english

File:

PDF, 57 KB

english, 2001

21

A functional metagenomic approach for expanding the synthetic biology toolbox for biomass conversion

Sommer, Morten OA, Church, George M, Dantas, Gautam

Journal:

Molecular Systems Biology

Year:

2010

Language:

english

File:

PDF, 798 KB

english, 2010

22

The human microbiome harbors a diverse reservoir of antibiotic resistance genes

Sommer, Morten O.A., Church, George M., Dantas, Gautam

Journal:

Year:

2010

Language:

english

File:

PDF, 449 KB

english, 2010

23

The Tetracycline Destructases: A Novel Family of Tetracycline-Inactivating Enzymes

Forsberg, Kevin J., Patel, Sanket, Wencewicz, Timothy A., Dantas, Gautam

Journal:

Chemistry & Biology

Year:

2015

Language:

english

File:

PDF, 2.72 MB

english, 2015

24

Antibiotics and the developing infant gut microbiota and resistome

Gibson, Molly K, Crofts, Terence S, Dantas, Gautam

Journal:

Current Opinion in Microbiology

Year:

2015

Language:

english

File:

PDF, 334 KB

english, 2015

25

KPC and NDM-1 Genes in Related Enterobacteriaceae Strains and Plasmids from Pakistan and the United States

Pesesky, Mitchell W., Hussain, Tahir, Wallace, Meghan, Wang, Bin, Andleeb, Saadia, Burnham, Carey-Ann D., Dantas, Gautam

Journal:

Emerging Infectious Diseases

Year:

2015

Language:

english

File:

PDF, 237 KB

english, 2015

26

Erratum: Gut resistome development in healthy twin pairs in the first year of life

Moore, Aimee M., Ahmadi, Sara, Patel, Sanket, Gibson, Molly K., Wang, Bin, Ndao, I. Malick, Deych, Elena, Shannon, William, Tarr, Phillip I., Warner, Barbara B., Dantas, Gautam

Journal:

Year:

2015

Language:

english

File:

PDF, 334 KB

english, 2015

27

Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice

Andrew L. Goodman, George Kallstrom, Jeremiah J. Faith, Alejandro Reyes, Aimee Moore, Gautam Dantas and Jeffrey I. Gordon

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.66 MB

english, 2011

28

Comparative transcriptomics elucidates adaptive phenol tolerance and utilization in lipid-accumulating Rhodococcus opacus PD630

Yoneda, Aki, Henson, William R., Goldner, Nicholas K., Park, Kun Joo, Forsberg, Kevin J., Kim, Soo Ji, Pesesky, Mitchell W., Foston, Marcus, Dantas, Gautam, Moon, Tae Seok

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 6.65 MB

english, 2016

29

The effects of antibiotics on the microbiome throughout development and alternative approaches for therapeutic modulation

Langdon, Amy, Crook, Nathan, Dantas, Gautam

Journal:

Genome Medicine

Year:

2016

Language:

english

File:

PDF, 817 KB

english, 2016

30

Gut resistome development in healthy twin pairs in the first year of life

Moore, Aimee M., Ahmadi, Sara, Patel, Sanket, Gibson, Molly K., Wang, Bin, Ndao, I. Malick, Deych, Elena, Shannon, William, Tarr, Phillip I., Warner, Barbara B., Dantas, Gautam

Journal:

Year:

2015

Language:

english

File:

PDF, 1.06 MB

english, 2015

31

Transcriptomic analysis illuminates genes involved in chlorophyll synthesis after nitrogen starvation inAcaryochlorissp. CCMEE 5410

Yoneda, Aki, Wittmann, Bruce J., King, Jeremy D., Blankenship, Robert E., Dantas, Gautam

Journal:

Photosynthesis Research

Year:

2016

Language:

english

File:

PDF, 2.24 MB

english, 2016

32

Antibiotic perturbation of the preterm infant gut microbiome and resistome

Gasparrini, Andrew J., Crofts, Terence S., Gibson, Molly K., Tarr, Phillip I., Warner, Barbara B., Dantas, Gautam

Journal:

Year:

2016

Language:

english

File:

PDF, 981 KB

english, 2016

33

The rapid spread of carbapenem-resistant Enterobacteriaceae

Potter, Robert F., D’souza, Alaric W., Dantas, Gautam

Journal:

Drug Resistance Updates

Year:

2016

Language:

english

File:

PDF, 439 KB

english, 2016

34

Developmental dynamics of the preterm infant gut microbiota and antibiotic resistome

Gibson, Molly K., Wang, Bin, Ahmadi, Sara, Burnham, Carey-Ann D., Tarr, Phillip I., Warner, Barbara B., Dantas, Gautam

Journal:

Nature Microbiology

Year:

2016

Language:

english

File:

PDF, 856 KB

english, 2016

35

Genomic and functional techniques to mine the microbiome for novel antimicrobials and antimicrobial resistance genes

Adu-Oppong, Boahemaa, Gasparrini, Andrew J., Dantas, Gautam

Journal:

Annals of the New York Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 363 KB

english, 2016

36

Novel resistance functions uncovered using functional metagenomic investigations of resistance reservoirs

Pehrsson, Erica C., Forsberg, Kevin J., Gibson, Molly K., Ahmadi, Sara, Dantas, Gautam

Journal:

Frontiers in Microbiology

Year:

2013

Language:

english

File:

PDF, 1.50 MB

english, 2013

37

Plasticity, dynamics, and inhibition of emerging tetracycline resistance enzymes

Park, Jooyoung, Gasparrini, Andrew J, Reck, Margaret R, Symister, Chanez T, Elliott, Jennifer L, Vogel, Joseph P, Wencewicz, Timothy A, Dantas, Gautam, Tolia, Niraj H

Journal:

Nature Chemical Biology

Year:

2017

Language:

english

File:

PDF, 2.92 MB

english, 2017

38

Draft Genome Sequence of the bla OXA-436 - and bla NDM-1 -Harboring Shewanella putrefaciens SA70 Isolate

Potter, Robert F., D’Souza, Alaric W., Wallace, Meghan A., Shupe, Angela, Patel, Sanket, Gul, Danish, Kwon, Jennie H., Andleeb, Saadia, Burnham, Carey-Ann D., Dantas, Gautam

Journal:

Genome Announcements

Year:

2017

Language:

english

File:

PDF, 128 KB

english, 2017

39

Structural and Functional Survey of Environmental Aminoglycoside Acetyltransferases Reveals Novel Functionality of Resistance Enzymes

Xu, Zhiyu, Stogios, Peter J, Quaile, Andrew, Forsberg, Kevin, Patel, Sanket, Skarina, Tatiana, Houliston, Scott, Arrowsmith, Cheryl, Dantas, Gautam, Savchenko, Alexei

Journal:

ACS Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 25.27 MB

english, 2017

40

Draft Genome Sequence of a Salmonella enterica Serovar Typhi Strain Resistant to Fourth-Generation Cephalosporin and Fluoroquinolone Antibiotics

Gul, Danish, Potter, Robert F., Riaz, Hurmat, Ashraf, Shifa Tariq, Wallace, Meghan A., Munir, Tehmina, Ali, Amjad, Burnham, Carey-Ann, Dantas, Gautam, Andleeb, Saadia

Journal:

Genome Announcements

Year:

2017

Language:

english

File:

PDF, 125 KB

english, 2017

41

Draft Genome Sequence of the Naturally Competent Bacillus simplex Strain WY10

Keen, Eric C., Bliskovsky, Valery V., Adhya, Sankar L., Dantas, Gautam

Journal:

Genome Announcements

Year:

2017

Language:

english

File:

PDF, 123 KB

english, 2017

42

bla IMP-27 on transferable plasmids in Proteus mirabilis and Providencia rettgeri

Potter, Robert F., Wallace, Meghan A., McMullen, Allison R., Prusa, Jerome, Stallings, Christina L., Burnham, Carey-Ann D., Dantas, Gautam

Journal:

Clinical Microbiology and Infection

Year:

2018

Language:

english

File:

PDF, 332 KB

english, 2018

43

Longitudinal Analysis of ICU Surface Multidrug-resistant Organism Contamination in the US and Pakistan

Kwon, Jennie H, D’ Souza, Alaric, Potter, Robert, Wallace, Meghan, Shupe, Angela, Patel, Sanket, Gul, Danish, Andleeb, Saadia, Burnham, Carey-Ann D, Dantas, Gautam

Journal:

Open Forum Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 556 KB

english, 2017

44

Checkpoint Checkmate: Microbiota Modulation of Cancer Immunotherapy

Keen, Eric C., Crofts, Terence S., Dantas, Gautam

Journal:

Clinical Chemistry

Year:

2018

Language:

english

File:

PDF, 84 KB

english, 2018

45

2322

Elizabeth Langdon, Amy, Bulow, Christopher, Reske, Kim, Sun, Sherry, Hink, Tiffany, Jones, Courtney, Burnham, Carey-Ann D., Dubberke, Erik R., Dantas, Gautam

Journal:

Journal of Clinical and Translational Science

Year:

2017

Language:

english

File:

PDF, 53 KB

english, 2017

46

Autologous Fecal Microbiota Transplantation as a Strategy to Prevent Colonization With Multidrug-Resistant Organisms Following Antimicrobial Therapy

Bulow, Christopher, D'Souza, Alaric, Hink, Tiffany, Wallace, Meghan, Reske, Kimberly, Sun, Xiaoqing, Kwon, Jennie H., Burnham, Carey-Ann D., Dantas, Gautam, Dubberke, Erik R.

Journal:

Open Forum Infectious Diseases

Year:

2015

Language:

english

File:

PDF, 132 KB

english, 2015

47

Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis

Krueger, Andrew S., Munck, Christian, Dantas, Gautam, Church, George M., Galagan, James, Lehár, Joseph, Sommer, Morten O. A., Fong, Stephen S.

Journal:

Year:

2016

Language:

english

File:

PDF, 3.56 MB

english, 2016

48

Characterization of Wild and Captive Baboon Gut Microbiota and Their Antibiotic Resistomes

Tsukayama, Pablo, Boolchandani, Manish, Patel, Sanket, Pehrsson, Erica C., Gibson, Molly K., Chiou, Kenneth L., Jolly, Clifford J., Rogers, Jeffrey, Phillips-Conroy, Jane E., Dantas, Gautam, Lozupone,

Journal:

Year:

2018

Language:

english

File:

PDF, 2.30 MB

english, 2018

49

Functional Metagenomic Investigations of the Human Intestinal Microbiota

Moore, Aimee M., Munck, Christian, Sommer, Morten O. A., Dantas, Gautam

Journal:

Frontiers in Microbiology

Year:

2011

Language:

english

File:

PDF, 431 KB

english, 2011

50

Evaluation of Machine Learning and Rules-Based Approaches for Predicting Antimicrobial Resistance Profiles in Gram-negative Bacilli from Whole Genome Sequence Data

Pesesky, Mitchell W., Hussain, Tahir, Wallace, Meghan, Patel, Sanket, Andleeb, Saadia, Burnham, Carey-Ann D., Dantas, Gautam

Journal:

Frontiers in Microbiology

Year:

2016

Language:

english

File:

PDF, 2.85 MB

english, 2016