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51

Sediment Microbial Diversity in Urban Piedmont North Carolina Watersheds Receiving Wastewater Input

Clinton, Sandra, Johnson, James, Lambirth, Kevin, Sun, Shan, Brouwer, Cory, Keen, Olya, Redmond, Molly, Fodor, Anthony, Gibas, Cynthia

Journal:

Year:

2020

File:

PDF, 3.95 MB

2020

52

Simultaneous Quantification of Multiple Bacteria by the BactoChip Microarray Designed to Target Species-Specific Marker Genes

Ballarini, Annalisa, Segata, Nicola, Huttenhower, Curtis, Jousson, Olivier, Gibas, Cynthia

Journal:

Year:

2013

Language:

english

File:

PDF, 869 KB

english, 2013

53

ChemInform Abstract: Physico-Chemical Foundations Underpinning Microarray and Next Generation Sequencing Experiments

Harrison, Andrew, Binder, Hans, Buhot, Arnaud, Burden, Conrad J., Carlon, Enrico, Gibas, Cynthia, Gamble, Lara J., Halperin, Avraham, Hooyberghs, Jef, Kreil, David P., et al., et al.

Journal:

Year:

2013

File:

PDF, 18 KB

2013

54

pH Dependence of Antibody/Lysozyme Complexation †

Gibas, Cynthia J., Subramaniam, Shankar, McCammon, J. Andrew, Braden, Bradford C., Poljak, Roberto J.

Journal:

Year:

1997

Language:

english

File:

PDF, 1.23 MB

english, 1997

55

Transcriptional Analysis of Prebiotic Uptake and Catabolism by Lactobacillus acidophilus NCFM

Andersen, Joakim Mark, Barrangou, Rodolphe, Hachem, Maher Abou, Lahtinen, Sampo J., Goh, Yong-Jun, Svensson, Birte, Klaenhammer, Todd R., Gibas, Cynthia

Journal:

Year:

2012

Language:

english

File:

PDF, 693 KB

english, 2012

56

Role of an Electrostatic Network of Residues in the Enzymatic Action of the Rhizomucor miehei Lipase Family †

Herrgård, Sanna, Gibas, Cynthia J., Subramaniam, Shankar

Journal:

Year:

2000

Language:

english

File:

PDF, 311 KB

english, 2000

57

Draft Genome Sequence of Vibrio toranzoniae Strain CECT 7225 T

Lasa, Aide, Gibas, Cynthia J., Romalde, Jesus L.

Journal:

Genome Announcements

Year:

2016

Language:

english

File:

PDF, 154 KB

english, 2016

58

Toward an Efficient Method of Identifying Core Genes for Evolutionary and Functional Microbial Phylogenies

Segata, Nicola, Huttenhower, Curtis, Gibas, Cynthia

Journal:

Year:

2011

Language:

english

File:

PDF, 1.75 MB

english, 2011

59

Comparison of the Sequence-Dependent Fluorescence of the Cyanine Dyes Cy3, Cy5, DyLight DY547 and DyLight DY647 on Single-Stranded DNA

Kretschy, Nicole, Somoza, Mark M., Gibas, Cynthia

Journal:

Year:

2014

Language:

english

File:

PDF, 393 KB

english, 2014

60

Computing the Partition Function for Kinetically Trapped RNA Secondary Structures

Lorenz, William A., Clote, Peter, Gibas, Cynthia

Journal:

Year:

2011

Language:

english

File:

PDF, 864 KB

english, 2011

61

Extensive Modulation of the Transcription Factor Transcriptome during Somatic Embryogenesis in Arabidopsis thaliana

Gliwicka, Marta, Nowak, Katarzyna, Balazadeh, Salma, Mueller-Roeber, Bernd, Gaj, Malgorzata D., Gibas, Cynthia

Journal:

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

62

Insights into Transcriptomes of Big and Low Sagebrush

Huynh, Mark D., Page, Justin T., Richardson, Bryce A., Udall, Joshua A., Gibas, Cynthia

Journal:

Year:

2015

Language:

english

File:

PDF, 764 KB

english, 2015

63

A Novel Exophiala Species Associated With Disseminated Granulomatous Inflammation in a Captive Eastern Hellbender (Cryptobranchus alleganiensis alleganiensis)

Hopf, Cynthia, Graham, Erin A., Gibas, Connie F. C., Sanders, Carmita, Mele, James, Fan, Hongxin, Garner, Michael M., Wiederhold, Nathan P., Ossiboff, Robert, Abou-Madi, Noha

Journal:

Frontiers in Veterinary Science

Year:

2020

File:

PDF, 1.04 MB

2020

64

Background correction using dinucleotide affinities improves the performance of GCRMA

Raad Z Gharaibeh, Anthony A Fodor, Cynthia J Gibas

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 454 KB

english, 2008

65

Phylogeny of Vibrio vulnificus from the Analysis of the Core-Genome: Implications for Intra-Species Taxonomy

Roig, Francisco J., González-Candelas, Fernando, Sanjuán, Eva, Fouz, Belén, Feil, Edward J., Llorens, Carlos, Baker-Austin, Craig, Oliver, James D., Danin-Poleg, Yael, Gibas, Cynthia J., Kashi, Yechez

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 3.53 MB

english, 2018

66

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

Supek, Fran, Bošnjak, Matko, Škunca, Nives, Šmuc, Tomislav, Gibas, Cynthia

Journal:

Year:

2011

Language:

english

File:

PDF, 1.81 MB

english, 2011

67

Deep-Sequencing Analysis of the Mouse Transcriptome Response to Infection with Brucella melitensis Strains of Differing Virulence

Wang, Fangkun, Hu, Sen, Liu, Wenxing, Qiao, Zujian, Gao, Yuzhe, Bu, Zhigao, Gibas, Cynthia

Journal:

Year:

2011

Language:

english

File:

PDF, 991 KB

english, 2011

68

Semantic Assembly and Annotation of Draft RNAseq Transcripts without a Reference Genome

Ptitsyn, Andrey, Temanni, Ramzi, Bouchard, Christelle, Anderson, Peter A. V., Gibas, Cynthia

Journal:

Year:

2015

Language:

english

File:

PDF, 1.70 MB

english, 2015

69

Information Limited Oligonucleotide Amplification Assay for Affinity-Based, Parallel Detection Studies

Bokkasam, Harish, Ott, Albrecht, Gibas, Cynthia

Journal:

Year:

2016

Language:

english

File:

PDF, 1.64 MB

english, 2016

70

Consistent Errors in First Strand cDNA Due to Random Hexamer Mispriming

van Gurp, Thomas P., McIntyre, Lauren M., Verhoeven, Koen J. F., Gibas, Cynthia

Journal:

Year:

2013

Language:

english

File:

PDF, 270 KB

english, 2013

71

PD5: A General Purpose Library for Primer Design Software

Riley, Michael C., Aubrey, Wayne, Young, Michael, Clare, Amanda, Gibas, Cynthia

Journal:

Year:

2013

Language:

english

File:

PDF, 1.22 MB

english, 2013

72

Software Note: Using probe secondary structure information to enhance Affymetrix GeneChip background estimates

Raad Z. Gharaibeh, Anthony A. Fodor, Cynthia J. Gibas

Journal:

Computational Biology and Chemistry

Year:

2007

Language:

english

File:

PDF, 505 KB

english, 2007

73

Transcriptomics and Comparative Analysis of Three Antarctic Notothenioid Fishes

Shin, Seung Chul, Kim, Su Jin, Lee, Jong Kyu, Ahn, Do Hwan, Kim, Min Gyu, Lee, Hyoungseok, Lee, Jungeun, Kim, Bum-Keun, Park, Hyun, Gibas, Cynthia

Journal:

Year:

2012

Language:

english

File:

PDF, 1.20 MB

english, 2012

74

Guest Editors Introduction to the Special Section on Bioinformatics Research and Applications

Cai, Zhipeng, Eulenstein, Oliver, Gibas, Cynthia

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 84 KB

english, 2014

75

Light saturation curves show competence of the water splitting complex in inactive Photosystem II reaction centers

Ladislav Nedbal, Cynthia Gibas, John Whitmarsh

Journal:

Photosynthesis Research

Year:

1991

Language:

english

File:

PDF, 847 KB

english, 1991

76

Molecular and Genomic Characterization of Vibrio mimicus Isolated from a Frozen Shrimp Processing Facility in Mexico

Guardiola-Avila, Iliana, Acedo-Felix, Evelia, Sifuentes-Romero, Itzel, Yepiz-Plascencia, Gloria, Gomez-Gil, Bruno, Noriega-Orozco, Lorena, Gibas, Cynthia

Journal:

Year:

2016

Language:

english

File:

PDF, 2.45 MB

english, 2016

77

Continuum Electrostatic Methods Applied to pH-Dependent Properties of Antibody–Antigen Association

Cynthia J. Gibas, Per Jambeck, Shankar Subramaniam

Journal:

Year:

2000

Language:

english

File:

PDF, 530 KB

english, 2000

78

Application of Equilibrium Models of Solution Hybridization to Microarray Design and Analysis

Gharaibeh, Raad Z., Newton, Joshua M., Weller, Jennifer W., Gibas, Cynthia J., Khodursky, Arkady B.

Journal:

Year:

2010

Language:

english

File:

PDF, 347 KB

english, 2010

79

SNP Detection in mRNA in Living Cells Using Allele Specific FRET Probes

Dahan, Liya, Huang, Lingyan, Kedmi, Ranit, Behlke, Mark A., Peer, Dan, Gibas, Cynthia

Journal:

Year:

2013

Language:

english

File:

PDF, 1.38 MB

english, 2013

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