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1

Isolation of exosomes by differential centrifugation: Theoretical analysis of a commonly used protocol

Livshts, Mikhail A., Khomyakova, Elena, Evtushenko, Evgeniy G., Lazarev, Vassili N., Kulemin, Nikolay A., Semina, Svetlana E., Generozov, Edward V., Govorun, Vadim M.

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.02 MB

english, 2015

2

Metabolic Changes of Mycobacterium tuberculosis during the Anti-Tuberculosis Therapy

Bespyatykh, Julia, Shitikov, Egor, Bespiatykh, Dmitry, Guliaev, Andrei, Klimina, Ksenia, Veselovsky, Vladimir, Arapidi, Georgij, Dogonadze, Marine, Zhuravlev, Viacheslav, Ilina, Elena, Govorun, Vadim

Journal:

Year:

2020

Language:

english

File:

PDF, 1.15 MB

english, 2020

3

New method for peptide desorption from abundant blood proteins for plasma/serum peptidome analyses by mass spectrometry

Rustam Ziganshin, Georgii Arapidi, Igor Azarkin, Elena Zaryadieva, Dmitry Alexeev, Vadim Govorun, Vadim Ivanov

Journal:

Journal of Proteomics

Year:

2011

Language:

english

File:

PDF, 989 KB

english, 2011

4

Induced expression of the antimicrobial peptide melittin inhibits experimental infection by Mycoplasma gallisepticum in chickens

Vassili N. Lazarev, Laszlo Stipkovits, Judit Biro, Dora Miklodi, Marina M. Shkarupeta, Galina A. Titova, Tatiana A. Akopian, Vadim M. Govorun

Journal:

Microbes and Infection

Year:

2004

Language:

english

File:

PDF, 175 KB

english, 2004

5

Database search post-processing by neural network: Advanced facilities for identification of components in protein mixtures using mass spectrometric peptide mapping

Petr G. Lokhov, Olga V. Tikhonova, Sergei A. Moshkovskii, Eugene I. Goufman, Marina V. Serebriakova, Boris I. Maksimov, Ilya Yu. Toropyguine, Victor G. Zgoda, Vadim M. Govorun, Alexander I. Archakov

Journal:

Year:

2004

Language:

english

File:

PDF, 222 KB

english, 2004

6

Protein-protein interactions as a target for drugs in proteomics

Alexander I. Archakov, Vadim M. Govorun, Alexander V. Dubanov, Yuri D. Ivanov, Alexander V. Veselovsky, Paul Lewi, Paul Janssen

Journal:

Year:

2003

Language:

english

File:

PDF, 121 KB

english, 2003

7

Nanotechnologies in proteomics

Yuri D. Ivanov, Vadim M. Govorun, Victor A. Bykov, Alexander I. Archakov

Journal:

Year:

2006

Language:

english

File:

PDF, 438 KB

english, 2006

8

Gene-centric view on the human proteome project: The example of the Russian roadmap for chromosome 18

Alexander Archakov, Alexander Aseev, Victor Bykov, Anatoly Grigoriev, Vadim Govorun, Vadim Ivanov, Alexander Khlunov, Andrey Lisitsa, Sergey Mazurenko, Alexander A. Makarov, Elena Ponomarenko, Renad S

Journal:

Year:

2011

Language:

english

File:

PDF, 109 KB

english, 2011

9

Application of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for the study of Helicobacter pylori

Elena N. Ilina, Alexandra D. Borovskaya, Marina V. Serebryakova, Vera V. Chelysheva, Kuvat T. Momynaliev, Thomas Maier, Markus Kostrzewa, Vadim M. Govorun

Journal:

Rapid Communications in Mass Spectrometry

Year:

2010

Language:

english

File:

PDF, 271 KB

english, 2010

10

Comparative evaluation of new typing schemes for urogenital Chlamydia trachomatis isolates

Larisa N. Ikryannikova, Marina M. Shkarupeta, Egor A. Shitikov, Elena N. Il'ina, Vadim M. Govorun

Journal:

FEMS Immunology & Medical Microbiology

Year:

2010

Language:

english

File:

PDF, 245 KB

english, 2010

11

Mycoplasma gallisepticum Produces a Histone-like Protein That Recognizes Base Mismatches in DNA

Kamashev, Dmitri, Oberto, Jacques, Serebryakova, Marina, Gorbachev, Alexey, Zhukova, Yulia, Levitskii, Sergei, Mazur, Alexey K., Govorun, Vadim

Journal:

Year:

2011

Language:

english

File:

PDF, 3.77 MB

english, 2011

12

Cyto-Insectotoxin 1a fromLachesana tarabaeviSpider Venom InhibitsChlamydia trachomatisInfection

Nadezhda F. Polina, Marina M. Shkarupeta, Anna S. Popenko, Alexander A. Vassilevski, Sergey A. Kozlov, Eugene V. Grishin, Vassili N. Lazarev, Vadim M. Govorun

Journal:

Probiotics and Antimicrobial Proteins

Year:

2012

Language:

english

File:

PDF, 438 KB

english, 2012

13

Functional Divergence of Helicobacter pylori Related to Early Gastric Cancer

Momynaliev, Kuvat T., Kashin, Sergey V., Chelysheva, Vera V., Selezneva, Oksana V., Demina, Irina A., Serebryakova, Marya V., Alexeev, Dmitry, Ivanisenko, Vladimir A., Aman, Ewgeniya, Govorun, Vadim M

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 4.94 MB

english, 2010

14

The role of intracellular glutathione in the progression of Chlamydia trachomatis infection

Vassili N. Lazarev, Grigory G. Borisenko, Marina M. Shkarupeta, Irina A. Demina, Marina V. Serebryakova, Maria A. Galyamina, Sergey A. Levitskiy, Vadim M. Govorun

Journal:

Free Radical Biology and Medicine

Year:

2010

Language:

english

File:

PDF, 834 KB

english, 2010

15

Phenylethynylpyrene-labeled oligonucleotide probes for excimer fluorescence SNP analysis of 23S rRNA gene in clarithromycin-resistant Helicobacter pylori strains

Igor A. Prokhorenko, Andrei D. Malakhov, Anna A. Kozlova, Kuvat Momynaliev, Vadim M. Govorun, Vladimir A. Korshun

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2006

Language:

english

File:

PDF, 402 KB

english, 2006

16

Isolation and characterization of a novel indigenous intestinal N4-related coliphage vB_EcoP_G7C

Eugene Kulikov, Andrew M. Kropinski, Alla Golomidova, Erika Lingohr, Vadim Govorun, Marina Serebryakova, Nikolai Prokhorov, Maria Letarova, Anatolij Manykin, Alexandra Strotskaya, Andrey Letarov

Journal:

Year:

2012

Language:

english

File:

PDF, 792 KB

english, 2012

17

Routes to Covalent Catalysis by Reactive Selection for Nascent Protein Nucleophiles

Reshetnyak, Andrey V., Armentano, Maria Francesca, Ponomarenko, Natalia A., Vizzuso, Domenica, Durova, Oxana M., Ziganshin, Rustam, Serebryakova, Marina, Govorun, Vadim, Gololobov, Gennady, Morse, Her

Journal:

Journal of the American Chemical Society

Year:

2007

Language:

english

File:

PDF, 426 KB

english, 2007

18

Non-Stressful Death of 23S rRNA Mutant G2061C Defective in Puromycin Reaction

Petr V. Sergiev, Dmitry V. Lesnyak, Dmitry E. Burakovsky, Maxim Svetlov, Vyacheslav A. Kolb, Marina V. Serebryakova, Irina A. Demina, Vadim M. Govorun, Olga A. Dontsova, Alexey A. Bogdanov

Journal:

Journal of Molecular Biology

Year:

2012

Language:

english

File:

PDF, 1.37 MB

english, 2012

19

Mass-spectrometry based minisequencing method for the rapid detection of drug resistance in Mycobacterium tuberculosis

Larisa N. Ikryannikova, Maxim V. Afanas'ev, Tat'yana A. Akopian, Elena N. Il'ina, Aleksey V. Kuz'min, Elena E. Larionova, Tat'yana G. Smirnova, Larisa N. Chernousova, Vadim M. Govorun

Journal:

Journal of Microbiological Methods

Year:

2007

Language:

english

File:

PDF, 1.04 MB

english, 2007

20

Comparative genome analysis of Ureaplasma parvum clinical isolates

Kuvat Momynaliev, Andrew Klubin, Vera Chelysheva, Oksana Selezneva, Tatyana Akopian, Vadim Govorun

Journal:

Research in Microbiology

Year:

2007

Language:

english

File:

PDF, 395 KB

english, 2007

21

A nascent proteome study combining click chemistry with 2DE

Osterman, Ilya A., Ustinov, Alexey V., Evdokimov, Denis V., Korshun, Vladimir A., Sergiev, Petr V., Serebryakova, Marina V., Demina, Irina A., Galyamina, Maria A., Govorun, Vadim M., Dontsova, Olga A.

Journal:

Year:

2013

Language:

english

File:

PDF, 745 KB

english, 2013

22

Antimicrobial peptide from spider venom inhibitsChlamydia trachomatisinfection at an early stage

Lazarev, Vassili N., Shkarupeta, Marina M., Polina, Nadezhda F., Kostrjukova, Elena S., Vassilevski, Alexander A., Kozlov, Sergey A., Grishin, Eugene V., Govorun, Vadim M.

Journal:

Archives of Microbiology

Year:

2013

Language:

english

File:

PDF, 1.25 MB

english, 2013

23

Spoligotyping of Mycobacterium tuberculosis complex isolates using hydrogel oligonucleotide microarrays

Bespyatykh, Julia A., Zimenkov, Danila V., Shitikov, Egor A., Kulagina, Elena V., Lapa, Sergey A., Gryadunov, Dmitry A., Ilina, Elena N., Govorun, Vadim M.

Journal:

Infection, Genetics and Evolution

Year:

2014

Language:

english

File:

PDF, 1.04 MB

english, 2014

24

Modified nucleotides m2G966/m5C967 of Escherichia coli 16S rRNA are required for attenuation of tryptophan operon

Prokhorova, Irina V., Osterman, Ilya A., Burakovsky, Dmitry E., Serebryakova, Marina V., Galyamina, Maria A., Pobeguts, Olga V., Altukhov, Ilya, Kovalchuk, Sergey, Alexeev, Dmitry G., Govorun, Vadim M

Journal:

Scientific Reports

Year:

2013

Language:

english

File:

PDF, 396 KB

english, 2013

25

Rural and urban microbiota

Tyakht, Alexander V, Alexeev, Dmitry G, Popenko, Anna S, Kostryukova, Elena S, Govorun, Vadim M

Journal:

Year:

2014

Language:

english

File:

PDF, 738 KB

english, 2014

26

Genome-scale analysis of DNA methylation in colorectal cancer using Infinium HumanMethylation450 BeadChips

Naumov, Vladimir A, Generozov, Edward V, Zaharjevskaya, Natalya B, Matushkina, Darya S, Larin, Andrey K, Chernyshov, Stanislav V, Alekseev, Mikhail V, Shelygin, Yuri A, Govorun, Vadim M

Journal:

Year:

2013

Language:

english

File:

PDF, 2.39 MB

english, 2013

27

Isolation of single Chlamydia-infected cells using laser microdissection

Podgorny, Oleg V., Polina, Nadezhda F., Babenko, Vladislav V., Karpova, Irina Y., Kostryukova, Elena S., Govorun, Vadim M., Lazarev, Vassili N.

Journal:

Journal of Microbiological Methods

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

28

COEXPRESSIONFINDER: A NEW ALGORITHM FOR FINDING GROUPS OF COEXPRESSED GENES

ROGOV, SERGEY I., MOMYNALIEV, KUVAT T., GOVORUN, VADIM M.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2006

Language:

english

File:

PDF, 276 KB

english, 2006

29

Bacterial rose garden for metagenomic SNP-based phylogeny visualization

Alexeev, Dmitry, Bibikova, Tanya, Kovarsky, Boris, Melnikov, Damir, Tyakht, Alexander, Govorun, Vadim

Journal:

Year:

2015

Language:

english

File:

PDF, 1.99 MB

english, 2015

30

Comprehensive analysis of the venom gland transcriptome of the spider Dolomedes fimbriatus

Kozlov, Sergey A., Lazarev, Vassili N., Kostryukova, Elena S., Selezneva, Oksana V., Ospanova, Elena A., Alexeev, Dmitry G., Govorun, Vadim M., Grishin, Eugene V.

Journal:

Scientific Data

Year:

2014

Language:

english

File:

PDF, 166 KB

english, 2014

31

Recombinant fragilysin isoforms cause E-cadherin cleavage of intact cells and do not cleave isolated E-cadherin

Kharlampieva, Daria, Manuvera, Valentin, Podgorny, Oleg, Grafskaia, Ekaterina, Kovalchuk, Sergey, Pobeguts, Olga, Altukhov, Ilya, Govorun, Vadim, Lazarev, Vassili

Journal:

Microbial Pathogenesis

Year:

2015

Language:

english

File:

PDF, 1.10 MB

english, 2015

32

A bacterial homologue YciH of eukaryotic translation initiation factor eIF1 regulates stress-related gene expression and is unlikely to be involved in translation initiation fidelity

Osterman, Ilya A., Evfratov, Sergey A., Dzama, Margarita M., Pletnev, Philipp I., Kovalchuk, Sergey I., Butenko, Ivan O., Pobeguts, Olga V., Golovina, Anna Ya., Govorun, Vadim M., Bogdanov, Alexey A.,

Journal:

Year:

2015

Language:

english

File:

PDF, 1.33 MB

english, 2015

33

Bovine Serum Albumin as a universal suppressor of non-specific peptide binding in vials prior to nano-chromatography coupled mass-spectrometry analysis

Kovalchuk, Sergey I., Anikanov, Nikolay A., Ivanova, Olga M., Ziganshin, Rustam H., Govorun, Vadim M.

Journal:

Analytica Chimica Acta

Year:

2015

Language:

english

File:

PDF, 1.71 MB

english, 2015

34

Analysis of nosocomial Staphylococcus haemolyticus by MLST and MALDI-TOF mass spectrometry

Kornienko, Maria, Ilina, Elena, Lubasovskaya, Ludmila, Priputnevich, Tatiana, Falova, Oksana, Sukchikch, Gennadiy, Govorun, Vadim

Journal:

Infection, Genetics and Evolution

Year:

2015

Language:

english

File:

PDF, 628 KB

english, 2015

35

1099 Changes in Taxonomy and Functions of the Gut Microbiome in Patients With Alcoholic Liver Cirrhosis: New Data

Bakulin, Igor G., Shalikiani, Nino, Alexeev, Dmitry, Tyakht, Alexander, Pavlenko, Alexander, Ilina, Elena, Kostryukova, Elena, Taraskina, Anastasia, Maev, Igor, Skorodumova, Lyubov, Govorun, Vadim

Journal:

Gastroenterology

Year:

2016

Language:

english

File:

PDF, 329 KB

english, 2016

36

Recombinant human peptidoglycan recognition proteins reveal antichlamydial activity

Bobrovsky, Pavel, Manuvera, Valentin, Polina, Nadezhda, Podgorny, Oleg, Prusakov, Kirill, Govorun, Vadim, Lazarev, Vassili

Journal:

Infection and Immunity

Year:

2016

Language:

english

File:

PDF, 2.07 MB

english, 2016

37

Ribosome profiling reveals an adaptation strategy of reduced bacterium to acute stress

Fisunov, Gleb Y., Evsyutina, Daria V., Garanina, Irina A., Arzamasov, Alexander A., Butenko, Ivan O., Altukhov, Ilya A., Nikitina, Anastasia S., Govorun, Vadim M.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.05 MB

english, 2016

38

Corrigendum: Isolation of exosomes by differential centrifugation: Theoretical analysis of a commonly used protocol

Livshits, Mikhail A., Khomyakova, Elena, Evtushenko, Evgeniy G., Lazarev, Vassili N., Kulemin, Nikolay A., Semina, Svetlana E., Generozov, Edward V., Govorun, Vadim M.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 115 KB

english, 2016

39

Data on genome analysis of Mycoplasma gallisepticum during intracellular infection

Matyushkina, Daria, Pobeguts, Olga, Garanina, Irina, Babenko, Vladislav, Vakhitova, Maria, Fisunov, Gleb, Govorun, Vadim

Journal:

Year:

2017

Language:

english

File:

PDF, 254 KB

english, 2017

40

Transcription profiling data set of different states of Mycoplasma gallisepticum

Semashko, Tatiana A., Arzamasov, Alexander A., Fisunov, Gleb Y., Govorun, Vadim M.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.08 MB

english, 2017

41

Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants

Sultanov, Rinat I., Arapidi, Georgij P., Vinogradova, Svetlana V., Govorun, Vadim M., Luster, Duglas G., Ignatov, Alexander N.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.33 MB

english, 2016

42

Proteome analysis of the Mycobacterium tuberculosis Beijing B0/W148 cluster

Bespyatykh, Julia, Shitikov, Egor, Butenko, Ivan, Altukhov, Ilya, Alexeev, Dmitry, Mokrousov, Igor, Dogonadze, Marine, Zhuravlev, Viacheslav, Yablonsky, Peter, Ilina, Elena, Govorun, Vadim

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 788 KB

english, 2016

43

Response induced in Mycoplasma gallisepticum under heat shock might be relevant to infection process

Butenko, Ivan, Vanyushkina, Anna, Pobeguts, Olga, Matyushkina, Daria, Kovalchuk, Sergey, Gorbachev, Alexey, Anikanov, Nicolay, Fisunov, Gleb, Govorun, Vadim

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.15 MB

english, 2017

44

Data-independent proteome profile of Mycoplasma gallisepticum under normal conditions and heat stress

Butenko, Ivan, Pobeguts, Olga, Matyushkina, Daria, Kovalchuk, Sergey, Anikanov, Nicolay, Fisunov, Gleb, Govorun, Vadim

Journal:

Year:

2017

Language:

english

File:

PDF, 248 KB

english, 2017

45

Stress effects of cyanotoxin β-methylamino-L-alanine (BMAA) on cyanobacterial heterocyst formation and functionality

Popova, Alexandra A., Rasmussen, Ulla, Semashko, Tatiana A., Govorun, Vadim M., Koksharova, Olga A.

Journal:

Environmental Microbiology Reports

Year:

2018

Language:

english

File:

PDF, 751 KB

english, 2018

46

Peptidomics dataset: Blood plasma and serum samples of healthy donors fractionated on a set of chromatography sorbents

Arapidi, Georgij, Osetrova, Maria, Ivanova, Olga, Butenko, Ivan, Saveleva, Tatjana, Pavlovich, Polina, Anikanov, Nikolay, Ivanov, Vadim, Govorun, Vadim

Journal:

Year:

2018

Language:

english

File:

PDF, 569 KB

english, 2018

47

Therapy-induced stress response is associated with downregulation of pre-mRNA splicing in cancer cells

Anufrieva, Ksenia S., Shender, Victoria О., Arapidi, Georgij P., Pavlyukov, Marat S., Shakhparonov, Michail I., Shnaider, Polina V., Butenko, Ivan O., Lagarkova, Maria A., Govorun, Vadim M.

Journal:

Genome Medicine

Year:

2018

Language:

english

File:

PDF, 3.09 MB

english, 2018

48

ACI-1 beta-lactamase is widespread across human gut microbiomes in Negativicutes due to transposons harboured by tailed prophages

Rands, Chris M, Starikova, Elizaveta V, Brüssow, Harald, Kriventseva, Evgenia V, Govorun, Vadim M, Zdobnov, Evgeny M

Journal:

Environmental Microbiology

Year:

2018

Language:

english

File:

PDF, 1.56 MB

english, 2018

49

Mutation in ribosomal protein S5 leads to spectinomycin resistance in Neisseria gonorrhoeae

Ilina, Elena N., Malakhova, Maya V., Bodoev, Ivan N., Oparina, Nina Y., Filimonova, Alla V., Govorun, Vadim M.

Journal:

Frontiers in Microbiology

Year:

2013

Language:

english

File:

PDF, 1.30 MB

english, 2013

50

Reconstruction of Transcription Control Networks in Mollicutes by High-Throughput Identification of Promoters

Fisunov, Gleb Y., Garanina, Irina A., Evsyutina, Daria V., Semashko, Tatiana A., Nikitina, Anastasia S., Govorun, Vadim M.

Journal:

Frontiers in Microbiology

Year:

2016

Language:

english

File:

PDF, 3.75 MB

english, 2016