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51

Diversification of bacterial genome content through distinct mechanisms over different timescales

Croucher, Nicholas J., Coupland, Paul G., Stevenson, Abbie E., Callendrello, Alanna, Bentley, Stephen D., Hanage, William P.

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 5.39 MB

english, 2014

52

Estimation of system reliability from stress-strength relationship

Hanagal, David D.

Journal:

Communication in Statistics- Theory and Methods

Year:

1996

Language:

english

File:

PDF, 753 KB

english, 1996

53

O03.4 Genomic Epidemiology of Neisseria Gonorrhoeae with Reduced Susceptibility to Cefixime in the United States

Grad, Y H, Kirkcaldy, R, Trees, D, Dordel, J, Goldstein, E, Weinstock, H, Parkhill, J, Hanage, W P, Bentley, S, Lipsitch, M

Journal:

Sexually Transmitted Infections

Year:

2013

Language:

english

File:

PDF, 48 KB

english, 2013

54

Making sense of differences in pneumococcal serotype replacement

Lewnard, Joseph A, Hanage, William P

Journal:

The Lancet Infectious Diseases

Year:

2019

File:

PDF, 652 KB

2019

55

Using Genetic Distance from Archived Samples for the Prediction of Antibiotic Resistance in Escherichia coli

MacFadden, Derek R., Coburn, Bryan, BÅinda, Karel, Corbeil, Antoine, Daneman, Nick, Fisman, David, Lee, Robyn S., Lipsitch, Marc, McGeer, Allison, Melano, Roberto G., Mubareka, Samira, Hanage, Willia

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2020

File:

PDF, 1.03 MB

2020

56

Modeling heterogeneity for bivariate survival data by the compound Poisson distribution with random scale

David D. Hanagal

Journal:

Statistics & Probability Letters

Year:

2010

Language:

english

File:

PDF, 236 KB

english, 2010

57

Selection of a better component in bivariate exponential models

David D. Hanagal

Journal:

Statistical Methods & Applications

Year:

1996

Language:

english

File:

PDF, 343 KB

english, 1996

58

Restricted Gene Flow among Hospital Subpopulations of Enterococcus faecium

Willems, R. J. L., Top, J., van Schaik, W., Leavis, H., Bonten, M., Siren, J., Hanage, W. P., Corander, J.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.07 MB

english, 2012

59

Tests for bivaroate exponentiality against bifra alternatives based on censored samples

Hanagal, David D., Ramanathan, T.V.

Journal:

Communication in Statistics- Theory and Methods

Year:

1998

Language:

english

File:

PDF, 394 KB

english, 1998

60

OPTIMAL GEOMETRIC PROCESS REPLACEMENT POLICIES BASED ON NUMBER OF DOWN TIMES

HANAGAL, DAVID D., KANADE, RUPALI A.

Journal:

International Journal of Reliability Quality and Safety Engineering

Year:

2011

Language:

english

File:

PDF, 279 KB

english, 2011

61

Optimal Replacement Policy Based on the Number of Down Times

Hanagal, David D., Kanade, Rupali A.

Journal:

Economic Quality Control

Year:

2010

Language:

english

File:

PDF, 413 KB

english, 2010

62

Estimating the hospitalization burden associated with influenza and respiratory syncytial virus in New York City, 2003-2011

Goldstein, Edward, Greene, Sharon K., Olson, Donald R., Hanage, William P., Lipsitch, Marc

Journal:

Influenza and Other Respiratory Viruses

Year:

2015

Language:

english

File:

PDF, 124 KB

english, 2015

63

Pneumococcal protein antigen serology varies with age and may predict antigenic profile of colonizing isolates

Azarian, T, Grant, LR, Georgieva, M, Hammitt, LL, Reid, R, Bentley, SD, Goldblatt, D, Santosham, M, Weatherholtz, R, Burbidge, P, Goklish, N, Thompson, CM, Hanage, WP, O’Brien, KL, Lipsitch, M

Journal:

The Journal of Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 738 KB

english, 2016

64

Hyper-Recombination, Diversity, and Antibiotic Resistance in Pneumococcus

Hanage, W. P., Fraser, C., Tang, J., Connor, T. R., Corander, J.

Journal:

Year:

2009

Language:

english

File:

PDF, 387 KB

english, 2009

65

Large sample tests for testing symmetry and independence in some bivariate exponential models

Hanagal, David D., Kale, B.K.

Journal:

Communication in Statistics- Theory and Methods

Year:

1992

Language:

english

File:

PDF, 529 KB

english, 1992

66

Compound negative binomial shared frailty models for bivariate survival data

Hanagal, David D., Dabade, Alok D.

Journal:

Statistics & Probability Letters

Year:

2013

Language:

english

File:

PDF, 366 KB

english, 2013

67

Invasiveness of Serotypes and Clones of Streptococcus pneumoniae among Children in Finland

Hanage, W. P., Kaijalainen, T. H., Syrjanen, R. K., Auranen, K., Leinonen, M., Makela, P. H., Spratt, B. G.

Journal:

Infection and Immunity

Year:

2005

Language:

english

File:

PDF, 59 KB

english, 2005

68

Parametric Bivariate Regression Analysis Based on Censored Samples: A Weibull Model

Hanagal, David D.

Journal:

Economic Quality Control

Year:

2004

Language:

english

File:

PDF, 126 KB

english, 2004

69

Heterogeneity in the Frequency and Characteristics of Homologous Recombination in Pneumococcal Evolution

Mostowy, Rafal, Croucher, Nicholas J., Hanage, William P., Harris, Simon R., Bentley, Stephen, Fraser, Christophe, Cooper, Vaughn S.

Journal:

Year:

2014

Language:

english

File:

PDF, 3.29 MB

english, 2014

70

Gamma frailty models for bivariate survival data

Hanagal, David D., Pandey, Arvind

Journal:

Journal of Statistical Computation and Simulation

Year:

2015

Language:

english

File:

PDF, 574 KB

english, 2015

71

Correlated Gamma Frailty Models for Bivariate Survival Data

Hanagal, David D., Pandey, Arvind, Ganguly, Ayon

Journal:

Communications in Statistics - Simulation and Computation

Year:

2015

Language:

english

File:

PDF, 607 KB

english, 2015

72

NIH Public Access

Wroe, Peter C, Lee, Grace M, Finkelstein, Jonathan A, Pelton, Stephen I, Hanage, William P, Lipsitch, Marc, Stevenson, Abbie E, Rifas-shiman, Sheryl L, Kleinman, K E N, Dutta-linn, Maya, Hinrichsen, V

Year:

2013

Language:

english

File:

PDF, 553 KB

english, 2013

73

What is the mechanism for persistent coexistence of drug-susceptible and drug-resistant strains of Streptococcus pneumoniae?

Colijn, C., Cohen, T., Fraser, C., Hanage, W., Goldstein, E., Givon-Lavi, N., Dagan, R., Lipsitch, M.

Journal:

Journal of The Royal Society Interface

Year:

2010

Language:

english

File:

PDF, 715 KB

english, 2010

74

Book Reviews

Journal:

International Small Business Journal

Year:

1995

File:

PDF, 360 KB

1995

75

Analysis of Bivariate Survival Data using Shared Inverse Gaussian Frailty Model

Hanagal, David D., Sharma, Richa

Journal:

Communication in Statistics- Theory and Methods

Year:

2015

Language:

english

File:

PDF, 992 KB

english, 2015

76

Frequency-dependent selection in vaccine-associated pneumococcal population dynamics

Corander, Jukka, Fraser, Christophe, Gutmann, Michael U., Arnold, Brian, Hanage, William P., Bentley, Stephen D., Lipsitch, Marc, Croucher, Nicholas J.

Journal:

Nature Ecology & Evolution

Year:

2017

Language:

english

File:

PDF, 1.83 MB

english, 2017

77

Effects of Streptococcus pneumoniae Strain Background on Complement Resistance

Hyams, Catherine, Opel, Sophia, Hanage, William, Yuste, Jose, Bax, Katie, Henriques-Normark, Birgitta, Spratt, Brian G., Brown, Jeremy S., DeLeo, Frank R.

Journal:

Year:

2011

Language:

english

File:

PDF, 531 KB

english, 2011

78

Prevalence, seasonality and antibiotic susceptibility of thermophilic Campylobacters in ceca and carcasses of poultry birds in the live-bird market

Saba, F D Parkar, Dhara, Sachdev, Nadine,, Aniket, Kamble, Gayatri, Suresh, Hitendra,, David, Hanagal, Yogesh, Shouche, Balu, Kapadnis

Journal:

African Journal of Microbiology Research

Year:

2013

Language:

english

File:

PDF, 489 KB

english, 2013

79

Bayesian Estimation of Bivariate Exponential Distributions Based on Linex and Quadratic Loss Functions: A Survival Approach with Censored Samples

Angali, Kambiz Ahmadi, Latifi, S. Mahmoud, Hanagal, David D.

Journal:

Communications in Statistics - Simulation and Computation

Year:

2014

Language:

english

File:

PDF, 140 KB

english, 2014

80

Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data

Worby, Colin J., Lipsitch, Marc, Hanage, William P., Koelle, Katia

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 855 KB

english, 2014

81

Low Effective Dispersal of Asexual Genotypes in Heterogeneous Landscapes by the Endemic Pathogen Penicillium marneffei

Fisher, Matthew C., Hanage, William P., de Hoog, Sybren, Johnson, Elizabeth, Smith, Michael D., White, Nicholas J., Vanittanakom, Nongnuch

Journal:

Year:

2005

Language:

english

File:

PDF, 210 KB

english, 2005

82

Impact of Host Heterogeneity on the Efficacy of Interventions to Reduce Staphylococcus aureus Carriage

Chang, Qiuzhi, Lipsitch, Marc, Hanage, William P.

Journal:

Infection Control and Hospital Epidemiology

Year:

2016

Language:

english

File:

PDF, 566 KB

english, 2016

83

Immunization, Antibiotic Use, and Pneumococcal Colonization Over a 15-Year Period

Lee, Grace M., Kleinman, Ken, Pelton, Stephen, Lipsitch, Marc, Huang, Susan S., Lakoma, Matt, Dutta-Linn, Maya, Rett, Melisa, Hanage, William P., Finkelstein, Jonathan A.

Journal:

Year:

2017

Language:

english

File:

PDF, 860 KB

english, 2017

84

Fine-scale haplotype structure reveals strong signatures of positive selection in a recombining bacterial pathogen

Arnold, Brian, Sohail, Mashaal, Wadsworth, Crista, Corander, Jukka, Hanage, William P, Sunyaev, Shamil, Grad, Yonatan H, Pond, Sergei Kosakovsky

Journal:

Molecular Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 2.99 MB

english, 2019

85

Correlated gamma frailty models for bivariate survival data based on reversed hazard rate

Hanagal, David D., Pandey, Arvind

Journal:

International Journal of Data Science

Year:

2017

File:

PDF, 162 KB

2017

86

Estimation of reliability of a component subjected to bivariate exponential stress

David D. Hanagal

Journal:

Statistical Papers

Year:

1999

Language:

english

File:

PDF, 283 KB

english, 1999

87

No coexistence for free: Neutral null models for multistrain pathogens

Marc Lipsitch, Caroline Colijn, Ted Cohen, William P. Hanage, Christophe Fraser

Journal:

Year:

2009

Language:

english

File:

PDF, 663 KB

english, 2009

88

Population genomics of post-vaccine changes in pneumococcal epidemiology

Croucher, Nicholas J, Finkelstein, Jonathan A, Pelton, Stephen I, Mitchell, Patrick K, Lee, Grace M, Parkhill, Julian, Bentley, Stephen D, Hanage, William P, Lipsitch, Marc

Journal:

Nature Genetics

Year:

2013

Language:

english

File:

PDF, 1.81 MB

english, 2013

89

Carried Pneumococci in Massachusetts Children

Hanage, William P., Bishop, Cynthia J., Huang, Susan S., Stevenson, Abbie E., Pelton, Stephen I., Lipsitch, Marc, Finkelstein, Jonathan A.

Journal:

Pediatric Infectious Disease Journal

Year:

2011

Language:

english

File:

PDF, 1.42 MB

english, 2011

90

Shared gamma frailty models based on reversed hazard rate for modeling Australian twin data

Hanagal, David D., Bhambure, Susmita M.

Journal:

Communication in Statistics- Theory and Methods

Year:

2017

Language:

english

File:

PDF, 105 KB

english, 2017

91

Evolution via recombination: Cell-to-cell contact facilitates larger recombination events in Streptococcus pneumoniae

Cowley, Lauren A., Petersen, Fernanda C., Junges, Roger, Jimson D. Jimenez, Med, Morrison, Donald A., Hanage, William P., Matic, Ivan

Journal:

Year:

2018

Language:

english

File:

PDF, 8.01 MB

english, 2018

92

Comparing Patient Risk Factors, Sequence Type, and Resistance Loci Identification Approaches for Predicting Antibiotic Resistance in Escherichia coli Bloodstream Infections

MacFadden, Derek R., Melano, Roberto G., Coburn, Bryan, Tijet, Nathalie, Hanage, William P., Daneman, Nick

Journal:

Journal of Clinical Microbiology

Year:

2019

Language:

english

File:

PDF, 986 KB

english, 2019

93

SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases

Wu, Fuqing, Zhang, Jianbo, Xiao, Amy, Gu, Xiaoqiong, Lee, Wei Lin, Armas, Federica, Kauffman, Kathryn, Hanage, William, Matus, Mariana, Ghaeli, Newsha, Endo, Noriko, Duvallet, Claire, Poyet, Mathilde,

Journal:

Year:

2020

File:

PDF, 901 KB

2020

94

Population structure in the Neisseria, and the biological significance of fuzzy species

Corander, J., Connor, T. R., O'Dwyer, C. A., Kroll, J. S., Hanage, W. P.

Journal:

Journal of The Royal Society Interface

Year:

2012

Language:

english

File:

PDF, 414 KB

english, 2012

95

Impact of 13-Valent Pneumococcal Conjugate Vaccination on Streptococcus pneumoniae Carriage in Young Children in Massachusetts

Lee, G. M., Kleinman, K., Pelton, S. I., Hanage, W., Huang, S. S., Lakoma, M., Dutta-Linn, M., Croucher, N. J., Stevenson, A., Finkelstein, J. A.

Journal:

Journal of the Pediatric Infectious Diseases Society

Year:

2014

Language:

english

File:

PDF, 567 KB

english, 2014

96

Graduate retention and the regional economy

Johnson, David, Vergé, Lauré Pere, Hanage, Richard

Journal:

Entrepreneurship & Regional Development

Year:

1993

Language:

english

File:

PDF, 688 KB

english, 1993

97

Book Reviews

Year:

1997

File:

PDF, 478 KB

1997

98

Response--Influenza

Fraser, C., Donnelly, C. A., Cauchemez, S., Hanage, W. P., van Kerkhove, M. D., Hollingsworth, T. D., Griffin, J., Baggaley, R. F., Jenkins, H. E., Lyons, E. J., Jombart, T., Hinsley, W. R., Grassly,

Journal:

Year:

2009

Language:

english

File:

PDF, 258 KB

english, 2009

99

Penicillin Resistance of Nonvaccine Type Pneumococcus before and after PCV13 Introduction, United States

Andam, Cheryl P., Worby, Colin J., Gierke, Ryan, McGee, Lesley, Pilishvili, Tamara, Hanage, William P.

Journal:

Emerging Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 1.50 MB

english, 2017

100

Testing whether the survival function is multivariate new better than used

David D. Hanagal

Journal:

Statistical Papers

Year:

1998

Language:

english

File:

PDF, 257 KB

english, 1998

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