Hashim M Al-Hashimi: search on Z-Library

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51

iRED Analysis of TAR RNA Reveals Motional Coupling, Long-Range Correlations, and a Dynamical Hinge

Musselman, Catherine, Al-Hashimi, Hashim M., Andricioaei, Ioan

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 688 KB

english, 2007

52

Characterizing Complex Dynamics in the Transactivation Response Element Apical Loop and Motional Correlations with the Bulge by NMR, Molecular Dynamics, and Mutagenesis

Dethoff, Elizabeth A., Hansen, Alexandar L., Musselman, Catherine, Watt, Eric D., Andricioaei, Ioan, Al-Hashimi, Hashim M.

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 574 KB

english, 2008

53

Characterizing the Protonation State of Cytosine in Transient G·C Hoogsteen Base Pairs in Duplex DNA

Nikolova, Evgenia N., Goh, Garrett B., Brooks, Charles L., Al-Hashimi, Hashim M.

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 691 KB

english, 2013

54

A General Method for Constructing Atomic-Resolution RNA Ensembles using NMR Residual Dipolar Couplings: The Basis for Interhelical Motions Revealed

Salmon, Loïc, Bascom, Gavin, Andricioaei, Ioan, Al-Hashimi, Hashim M.

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 2.15 MB

english, 2013

55

Probing Transient Hoogsteen Hydrogen Bonds in Canonical Duplex DNA Using NMR Relaxation Dispersion and Single-Atom Substitution

Nikolova, Evgenia N., Gottardo, Federico L., Al-Hashimi, Hashim M.

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 1.58 MB

english, 2012

56

A historical account of hoogsteen base-pairs in duplex DNA

Nikolova, Evgenia N., Zhou, Huiqing, Gottardo, Federico L., Alvey, Heidi S., Kimsey, Isaac J., Al-Hashimi, Hashim M.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.50 MB

english, 2013

57

Conservation and Functional Importance of Carbon–Oxygen Hydrogen Bonding in AdoMet-Dependent Methyltransferases

Horowitz, Scott, Dirk, Lynnette M.A., Yesselman, Joseph D., Nimtz, Jennifer S., Adhikari, Upendra, Mehl, Ryan A., Scheiner, Steve, Houtz, Robert L., Al-Hashimi, Hashim M., Trievel, Raymond C.

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 2.75 MB

english, 2013

58

Influence of Dimethylsulfoxide on RNA Structure and Ligand Binding

Lee, Janghyun, Vogt, Catherine E., McBrairty, Mitchell, Al-Hashimi, Hashim M.

Journal:

Analytical Chemistry

Year:

2013

Language:

english

File:

PDF, 1.80 MB

english, 2013

59

Increasing occurrences and functional roles for high energy purine-pyrimidine base-pairs in nucleic acids

Kimsey, Isaac, Al-Hashimi, Hashim M

Journal:

Current Opinion in Structural Biology

Year:

2014

Language:

english

File:

PDF, 1.82 MB

english, 2014

60

NMR studies of nucleic acid dynamics

Al-Hashimi, Hashim M.

Journal:

Journal of Magnetic Resonance

Year:

2013

Language:

english

File:

PDF, 3.27 MB

english, 2013

61

Measuring similarity between dynamic ensembles of biomolecules

Yang, Shan, Salmon, Loïc, Al-Hashimi, Hashim M

Journal:

Year:

2014

Language:

english

File:

PDF, 431 KB

english, 2014

62

Examining the Impact of Supercoiling on Sequence-Dependent DNA Structure and Flexibility

Pedini, Heidi S., Al-Hashimi, Hashim M.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 37 KB

english, 2012

63

Evaluating the uncertainty in exchange parameters determined from off-resonance R1ρ relaxation dispersion for systems in fast exchange

Bothe, Jameson R., Stein, Zachary W., Al-Hashimi, Hashim M.

Journal:

Journal of Magnetic Resonance

Year:

2014

Language:

english

File:

PDF, 1.50 MB

english, 2014

64

NMR Dissection of the Detailed Mechanism for Antibiotic Binding to Asite RNA

Chugh, Jeetender, Casiano-Negroni, Anette, Al-Hashimi, Hashim M.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 58 KB

english, 2011

65

A Coarse Grain RNA Model for Exploration of RNA Conformational Space

Mustoe, Anthony M., Al-Hashimi, Hashim M., Brooks, Charles L.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 37 KB

english, 2011

66

Flipping of the Ribosomal A-Site Adenines Provides a Basis for tRNA Selection

Zeng, Xiancheng, Chugh, Jeetender, Casiano-Negroni, Anette, Al-Hashimi, Hashim M., Brooks, Charles L.

Journal:

Journal of Molecular Biology

Year:

2014

Language:

english

File:

PDF, 2.18 MB

english, 2014

67

Characterization of ps-Ms Dynamics in the TAR Apical Loop by NMR

Dethoff, Elizabeth A., Al-Hashimi, Hashim M.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 37 KB

english, 2011

68

An RNA Structural Ensemble Derived by Combining MD and Elongated NMR RDCs Provides Evidence for Adaptive Recognition via Conformational Selection

Frank, Aaron T., Stelzer, Andrew, Andricioaei, Ioan, Al-Hashimi, Hashim

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 38 KB

english, 2009

69

Linking RNA Secondary Structure to the Free Energy of Tertiary Structure Folding through Coarse-Grained Models

Mustoe, Anthony M., Al-Hashimi, Hashim M., Brooks, Charles L.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 111 KB

english, 2014

70

Atomic Movies of RNA Dynamics Reveal Basis for Conformational Adaptation

Al-Hashimi, Hashim

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 37 KB

english, 2009

71

Manipulating Unconventional CH-Based Hydrogen Bonding in a Methyltransferase via Noncanonical Amino Acid Mutagenesis

Horowitz, Scott, Adhikari, Upendra, Dirk, Lynnette M. A., Del Rizzo, Paul A., Mehl, Ryan A., Houtz, Robert L., Al-Hashimi, Hashim M., Scheiner, Steve, Trievel, Raymond C.

Journal:

ACS Chemical Biology

Year:

2014

Language:

english

File:

PDF, 956 KB

english, 2014

72

Insights into Domain–Domain Motions in Proteins and RNA from Solution NMR

Ravera, Enrico, Salmon, Loïc, Fragai, Marco, Parigi, Giacomo, Al-Hashimi, Hashim, Luchinat, Claudio

Journal:

Accounts of Chemical Research

Year:

2014

Language:

english

File:

PDF, 4.70 MB

english, 2014

73

Widespread transient Hoogsteen base pairs in canonical duplex DNA with variable energetics

Alvey, Heidi S., Gottardo, Federico L., Nikolova, Evgenia N., Al-Hashimi, Hashim M.

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 453 KB

english, 2014

74

Ultrahigh Resolution Characterization of Domain Motions and Correlations by Multialignment and Multireference Residual Dipolar Coupling NMR

Fisher, Charles K., Zhang, Qi, Stelzer, Andrew, Al-Hashimi, Hashim M.

Journal:

Journal of Physical Chemistry B

Year:

2008

Language:

english

File:

PDF, 1.06 MB

english, 2008

75

Amphipathic Small Molecules Mimic the Binding Mode and Function of Endogenous Transcription Factors

Buhrlage, Sara J., Bates, Caleb A., Rowe, Steven P., Minter, Aaron R., Brennan, Brian B., Majmudar, Chinmay Y., Wemmer, David E., Al-Hashimi, Hashim, Mapp, Anna K.

Journal:

ACS Chemical Biology

Year:

2009

Language:

english

File:

PDF, 2.36 MB

english, 2009

76

Probing Sequence-Specific DNA Flexibility in A-Tracts and Pyrimidine-Purine Steps by Nuclear Magnetic Resonance 13 C Relaxation and Molecular Dynamics Simulations

Nikolova, Evgenia N., Bascom, Gavin D., Andricioaei, Ioan, Al-Hashimi, Hashim M.

Journal:

Year:

2012

Language:

english

File:

PDF, 2.43 MB

english, 2012

77

Modulating Protein Structure with Fluorous Amino Acids: Increased Stability and Native-like Structure Conferred on a 4-Helix Bundle Protein by Hexafluoroleucine

Lee, Hyang-Yeol, Lee, Kyung-Hoon, Al-Hashimi, Hashim M., Marsh, E. Neil G.

Journal:

Journal of the American Chemical Society

Year:

2006

Language:

english

File:

PDF, 214 KB

english, 2006

78

Dynamics of Large Elongated RNA by NMR Carbon Relaxation

Hansen, Alexandar L., Al-Hashimi, Hashim M.

Journal:

Journal of the American Chemical Society

Year:

2007

Language:

english

File:

PDF, 484 KB

english, 2007

79

Using Fluorine Nuclear Magnetic Resonance To Probe the Interaction of Membrane-Active Peptides with the Lipid Bilayer

Buer, Benjamin C., Chugh, Jeetender, Al-Hashimi, Hashim M., Marsh, E. Neil G.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.40 MB

english, 2010

80

Alignment of the HTLV−I Rex Peptide Bound to Its Target RNA Aptamer from Magnetic Field-Induced Residual Dipolar Couplings and Intermolecular Hydrogen Bonds

Al-Hashimi, Hashim M., Gorin, Andrey, Majumdar, Ananya, Patel, Dinshaw J.

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 103 KB

english, 2001

81

Field- and Phage-Induced Dipolar Couplings in a Homodimeric DNA Quadruplex: Relative Orientation of G·(C−A) Triad and G-Tetrad Motifs and Direct Determination of C2 Symmetry Axis Orientation

Al-Hashimi, Hashim M., Majumdar, Ananya, Gorin, Andrey, Kettani, Abdelali, Skripkin, Eugene, Patel, Dinshaw J.

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 195 KB

english, 2001

82

Extending the Range of Microsecond-to-Millisecond Chemical Exchange Detected in Labeled and Unlabeled Nucleic Acids by Selective Carbon R 1ρ NMR Spectroscopy

Hansen, Alexandar L., Nikolova, Evgenia N., Casiano-Negroni, Anette, Al-Hashimi, Hashim M.

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 502 KB

english, 2009

83

Structural and Dynamic Analysis of Residual Dipolar Coupling Data for Proteins

Tolman, Joel R., Al-Hashimi, Hashim M., Kay, Lewis E., Prestegard, James H.

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 121 KB

english, 2001

84

Sequence-Specific B-DNA Flexibility Modulates Z-DNA Formation

Bothe, Jameson R., Lowenhaupt, Ky, Al-Hashimi, Hashim M.

Journal:

Journal of the American Chemical Society

Year:

2011

Language:

english

File:

PDF, 1.06 MB

english, 2011

85

Probing Na + -Induced Changes in the HIV-1 TAR Conformational Dynamics Using NMR Residual Dipolar Couplings: New Insights into the Role of Counterions and Electrostatic Interactions in Adaptive Recognition †

Casiano-Negroni, Anette, Sun, Xiaoyan, Al-Hashimi, Hashim M.

Journal:

Year:

2007

Language:

english

File:

PDF, 631 KB

english, 2007

86

Probing Motions between Equivalent RNA Domains Using Magnetic Field Induced Residual Dipolar Couplings: Accounting for Correlations between Motions and Alignment

Zhang, Qi, Throolin, Rachel, Pitt, Stephen W., Serganov, Alexander, Al-Hashimi, Hashim M.

Journal:

Journal of the American Chemical Society

Year:

2003

Language:

english

File:

PDF, 71 KB

english, 2003

87

Coarse Grained Models Reveal Essential Contributions of Topological Constraints to the Conformational Free Energy of RNA Bulges

Mustoe, Anthony M., Al-Hashimi, Hashim M., Brooks, Charles L.

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 2.12 MB

english, 2014

88

Referencing Strategy for the Direct Comparison of Nuclear Magnetic Resonance and Molecular Dynamics Motional Parameters in RNA

Musselman, Catherine, Zhang, Qi, Al-Hashimi, Hashim, Andricioaei, Ioan

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 2.60 MB

english, 2010

89

Incorporation of CC Steps into Z-DNA: Interplay between B–Z Junction and Z-DNA Helical Formation

Bothe, Jameson R., Lowenhaupt, Ky, Al-Hashimi, Hashim M.

Journal:

Year:

2012

Language:

english

File:

PDF, 3.09 MB

english, 2012

90

Approximate Reconstruction of Continuous Spatially Complex Domain Motions by Multialignment NMR Residual Dipolar Couplings

Fisher, Charles K., Al-Hashimi, Hashim M.

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 995 KB

english, 2009

91

Determining Stoichiometry in Homomultimeric Nucleic Acid Complexes Using Magnetic Field Induced Residual Dipolar Couplings

Al-Hashimi, Hashim M., Tolman, Joel R., Majumdar, Ananya, Gorin, Andrey, Patel, Dinshaw J.

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 34 KB

english, 2001

92

Using Fluorine Nuclear Magnetic Resonance To Probe Changes in the Structure and Dynamics of Membrane-Active Peptides Interacting with Lipid Bilayers

Suzuki, Yuta, Buer, Benjamin C., Al-Hashimi, Hashim M., Marsh, E. Neil G.

Journal:

Year:

2011

Language:

english

File:

PDF, 3.79 MB

english, 2011

93

Conformational Analysis of a Flexible Oligosaccharide Using Residual Dipolar Couplings

Tian, Fang, Al-Hashimi, Hashim M., Craighead, John L., Prestegard, James H.

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 167 KB

english, 2001

94

RNA structure: Adding a second dimension

Petzold, Katja, Al-Hashimi, Hashim M.

Journal:

Nature Chemistry

Year:

2011

Language:

english

File:

PDF, 326 KB

english, 2011

95

An RNA tertiary switch by modifying how helices are tethered

Laura R Ganser,Anthony M Mustoe,Hashim M Al-Hashimi

Journal:

Year:

2014

Language:

english

File:

PDF, 222 KB

english, 2014

96

Carbon Sequestration in Synechococcus Sp.: From Molecular Machines to Hierarchical Modeling

Heffelfinger, Grant S., Martino, Anthony, Gorin, Andrey, Xu, Ying, Rintoul, Mark D., Geist, Al, Al-Hashimi, Hashim M., Davidson, George S., Faulon, Jean Loup, Frink, Laurie J., Haaland, David M., Hart

Journal:

Omics A Journal of Integrative Biology

Year:

2002

Language:

english

File:

PDF, 485 KB

english, 2002

97

Guanine to Inosine Substitution Leads to Large Increases in the Population of a Transient G·C Hoogsteen Base Pair

Nikolova, Evgenia N., Stull, Frederick, Al-Hashimi, Hashim M.

Journal:

Year:

2014

Language:

english

File:

PDF, 457 KB

english, 2014

98

3D maps of RNA interhelical junctions

Bailor, Maximillian H, Mustoe, Anthony M, Brooks, Charles L, Al-Hashimi, Hashim M

Journal:

Bioentrepreneur

Year:

2011

Language:

english

File:

PDF, 1.83 MB

english, 2011

99

Dynamic Motions of the HIV-1 Frameshift Site RNA

Mouzakis, Kathryn D., Dethoff, Elizabeth A., Tonelli, Marco, Al-Hashimi, Hashim, Butcher, Samuel E.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 1.61 MB

english, 2015

100

Visualizing transient Watson–Crick-like mispairs in DNA and RNA duplexes

Kimsey, Isaac J., Petzold, Katja, Sathyamoorthy, Bharathwaj, Stein, Zachary W., Al-Hashimi, Hashim M.

Journal:

Year:

2015

Language:

english

File:

PDF, 4.25 MB

english, 2015

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