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1

Genome-wide atlas of gene expression in the adult mouse brain

Lein, Ed S., Hawrylycz, Michael J., Ao, Nancy, Ayres, Mikael, Bensinger, Amy, Bernard, Amy, Boe, Andrew F., Boguski, Mark S., Brockway, Kevin S., Byrnes, Emi J.

Journal:

Year:

2006

Language:

english

File:

PDF, 2.89 MB

english, 2006

2

An anatomically comprehensive atlas of the adult human brain transcriptome

Hawrylycz, Michael J., Lein, Ed S., Guillozet-Bongaarts, Angela L., Shen, Elaine H., Ng, Lydia, Miller, Jeremy A., van de Lagemaat, Louie N., Smith, Kimberly A., Ebbert, Amanda, Riley, Zackery L., Aba

Journal:

Year:

2012

Language:

english

File:

PDF, 5.33 MB

english, 2012

3

Cell-type-specific consequences of reelin deficiency in the mouse neocortex, hippocampus, and amygdala

Maureen P. Boyle, Amy Bernard, Carol L. Thompson, Lydia Ng, Andrew Boe, Marty Mortrud, Michael J. Hawrylycz, Allan R. Jones, Robert F. Hevner, Ed S. Lein

Journal:

The Journal of Comparative Neurology

Year:

2011

Language:

english

File:

PDF, 19.15 MB

english, 2011

4

Aerobic Glycolysis in the Human Brain Is Associated with Development and Neotenous Gene Expression

Goyal, Manu S., Hawrylycz, Michael, Miller, Jeremy A., Snyder, Abraham Z., Raichle, Marcus E.

Journal:

Cell Metabolism

Year:

2014

Language:

english

File:

PDF, 1.26 MB

english, 2014

5

BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images

Peng, Hanchuan, Hawrylycz, Michael, Roskams, Jane, Hill, Sean, Spruston, Nelson, Meijering, Erik, Ascoli, Giorgio A.

Journal:

Year:

2015

Language:

english

File:

PDF, 782 KB

english, 2015

6

A Geometric Identity for Pappus' Theorem

Michael Hawrylycz

Journal:

Proceedings of the National Academy of Sciences

Year:

1994

Language:

english

File:

PDF, 316 KB

english, 1994

7

[Lecture Notes in Computer Science] Brain Informatics and Health Volume 9919 || A Conversational Agent for an Online Mental Health Intervention

Ascoli, Giorgio A., Hawrylycz, Michael, Ali, Hesham, Khazanchi, Deepak, Shi, Yong

Year:

2016

Language:

english

File:

PDF, 879 KB

english, 2016

8

[Lecture Notes in Computer Science] Brain Informatics and Health Volume 9919 || Influence of Spatial Learning Perspectives on Navigation Through Virtual Reality Environment

Ascoli, Giorgio A., Hawrylycz, Michael, Ali, Hesham, Khazanchi, Deepak, Shi, Yong

Year:

2016

Language:

english

File:

PDF, 1.33 MB

english, 2016

9

Systematic generation of biophysically detailed models for diverse cortical neuron types

Gouwens, Nathan W., Berg, Jim, Feng, David, Sorensen, Staci A., Zeng, Hongkui, Hawrylycz, Michael J., Koch, Christof, Arkhipov, Anton

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 3.08 MB

english, 2018

10

New light on cortical neuropeptides and synaptic network plasticity

Smith, Stephen J, Hawrylycz, Michael, Rossier, Jean, SÃ¼mbÃ¼l, Uygar

Journal:

Current Opinion in Neurobiology

Year:

2020

File:

PDF, 5.68 MB

2020

11

Cell-type-specific consequences of reelin deficiency in the mouse neocortex, hippocampus, and amygdala

Maureen P. Boyle, Amy Bernard, Carol L. Thompson, Lydia Ng, Andrew Boe, Marty Mortrud, Michael J. Hawrylycz, Allan R. Jones, Robert F. Hevner, Ed S. Lein

Journal:

The Journal of Comparative Neurology

Year:

2011

File:

PDF, 411 KB

2011

12

Arguesian Identities in Invariant Theory

Michael Hawrylycz

Journal:

Advances in Mathematics

Year:

1996

Language:

english

File:

PDF, 1.60 MB

english, 1996

13

The lattice of closure relations on a poset

Michael Hawrylycz, Victor Reiner

Journal:

Algebra Universalis

Year:

1993

Language:

english

File:

PDF, 394 KB

english, 1993

14

High-throughput localization of functional elements by quantitative chromatin profiling

Dorschner, Michael O, Hawrylycz, Michael, Humbert, Richard, Wallace, James C, Shafer, Anthony, Kawamoto, Janelle, Mack, Joshua, Hall, Robert, Goldy, Jeff, Sabo, Peter J

Journal:

Year:

2004

Language:

english

File:

PDF, 357 KB

english, 2004

15

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain

Madisen, Linda, Zwingman, Theresa A, Sunkin, Susan M, Oh, Seung Wook, Zariwala, Hatim A, Gu, Hong, Ng, Lydia L, Palmiter, Richard D, Hawrylycz, Michael J, Jones, Allan R

Journal:

Nature Neuroscience

Year:

2009

Language:

english

File:

PDF, 1.40 MB

english, 2009

16

On computing the closest boundary point on the convex hull

Alok Aggarwal, Michael Hawrylycz

Journal:

Information Processing Letters

Year:

1989

Language:

english

File:

PDF, 440 KB

english, 1989

17

NeuroBlast: a 3D spatial homology search tool for gene expression

Lydia Ng, Chris Lau, Rob Young, Sayan Pathak, Leonard Kuan, Andrew Sodt, Madhavi Sutram, Chang-Kyu Lee, Chinh Dang, Michael Hawrylycz

Journal:

BMC Neuroscience

Year:

2007

Language:

english

File:

PDF, 223 KB

english, 2007

18

Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy

Jason W. Bohland, Hemant Bokil, Sayan D. Pathak, Chang-Kyu Lee, Lydia Ng, Christopher Lau, Chihchau Kuan, Michael Hawrylycz, Partha P. Mitra

Journal:

Year:

2010

Language:

english

File:

PDF, 1.51 MB

english, 2010

19

Surface-based mapping of gene expression and probabilistic expression maps in the mouse cortex

Lydia Ng, Chris Lau, Susan M. Sunkin, Amy Bernard, M. Mallar Chakravarty, Ed S. Lein, Allan R. Jones, Michael Hawrylycz

Journal:

Year:

2010

Language:

english

File:

PDF, 1.44 MB

english, 2010

20

Telephone Problems with Failures

Berman, Kenneth A., Hawrylycz, Michael

Journal:

SIAM Journal on Algebraic and Discrete Methods

Year:

1986

Language:

english

File:

PDF, 656 KB

english, 1986

21

Transcripts within silicopredicted RNA structure are enriched everywhere in the mouse brain

Seemann, Stefan E, Sunkin, Susan M, Hawrylycz, Michael J, Ruzzo, Walter L, Gorodkin, Jan

Journal:

Year:

2012

Language:

english

File:

PDF, 710 KB

english, 2012

22

Computational neuroanatomy and co-expression of genes in the adult mouse brain, analysis tools for the Allen Brain Atlas

Pascal Grange, Michael Hawrylycz, Partha P. Mitra

Journal:

Quantitative Biology

Year:

2013

Language:

english

File:

PDF, 565 KB

english, 2013

23

[IEEE 2011 Biomedical Sciences and Engineering Conference (BSEC) - Knoxville, TN, USA (2011.03.15-2011.03.17)] Proceedings of the 2011 Biomedical Sciences and Engineering Conference: Image Informatics and Analytics in Biomedicine - Global exploratory analysis of massive neuroimaging collections using Microsoft Silverlight PivotViewer

Yan, Lei, Zhou, Xiaodong, Lu, Lu, Centeno, Arthur G., Kuan, Leonard, Hawrylycz, Michael, Larimer, Monica, Rosen, Glenn D., Williams, Robert W.

Year:

2011

Language:

english

File:

PDF, 1.30 MB

english, 2011

24

Visualizing the spatial gene expression organization in the brain through non-linear similarity embeddings

Mahfouz, Ahmed, van de Giessen, Martijn, van der Maaten, Laurens, Huisman, Sjoerd, Reinders, Marcel, Hawrylycz, Michael J., Lelieveldt, Boudewijn P.F.

Journal:

Year:

2015

Language:

english

File:

PDF, 5.38 MB

english, 2015

25

Neuroinformatics of the Allen Mouse Brain Connectivity Atlas

Kuan, Leonard, Li, Yang, Lau, Chris, Feng, David, Bernard, Amy, Sunkin, Susan M., Zeng, Hongkui, Dang, Chinh, Hawrylycz, Michael, Ng, Lydia

Journal:

Year:

2015

Language:

english

File:

PDF, 7.93 MB

english, 2015

26

Mapping Social Behavior-Induced Brain Activation at Cellular Resolution in the Mouse

Kim, Yongsoo, Venkataraju, Kannan Umadevi, Pradhan, Kith, Mende, Carolin, Taranda, Julian, Turaga, Srinivas C., Arganda-Carreras, Ignacio, Ng, Lydia, Hawrylycz, Michael J., Rockland, Kathleen S., Seun

Journal:

Year:

2015

Language:

english

File:

PDF, 4.15 MB

english, 2015

27

Exploration and visualization of connectivity in the adult mouse brain

Feng, David, Lau, Chris, Ng, Lydia, Li, Yang, Kuan, Leonard, Sunkin, Susan M., Dang, Chinh, Hawrylycz, Michael

Journal:

Year:

2015

Language:

english

File:

PDF, 8.24 MB

english, 2015

28

Adaptive Image Enhancement for Tracing 3D Morphologies of Neurons and Brain Vasculatures

Zhou, Zhi, Sorensen, Staci, Zeng, Hongkui, Hawrylycz, Michael, Peng, Hanchuan

Journal:

Neuroinformatics

Year:

2015

Language:

english

File:

PDF, 4.57 MB

english, 2015

29

BlastNeuronfor Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies

Wan, Yinan, Long, Fuhui, Qu, Lei, Xiao, Hang, Hawrylycz, Michael, Myers, Eugene W., Peng, Hanchuan

Journal:

Neuroinformatics

Year:

2015

Language:

english

File:

PDF, 2.42 MB

english, 2015

30

Automated Analysis of a Diverse Synapse Population

Busse, Brad, Smith, Stephen, Hawrylycz, Michael

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 5.26 MB

english, 2013

31

Digital Atlasing and Standardization in the Mouse Brain

Hawrylycz, Michael, Baldock, Richard A., Burger, Albert, Hashikawa, Tsutomu, Johnson, G. Allan, Martone, Maryann, Ng, Lydia, Lau, Chris, Larsen, Stephen D., Nissanov, Jonathan, Puelles, Luis, Ruffins,

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 1.62 MB

english, 2011

32

Co-expression Profiling of Autism Genes in the Mouse Brain

Menashe, Idan, Grange, Pascal, Larsen, Eric C., Banerjee-Basu, Sharmila, Mitra, Partha P., Hawrylycz, Michael

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 1.67 MB

english, 2013

33

Canonical genetic signatures of the adult human brain

Hawrylycz, Michael, Miller, Jeremy A, Menon, Vilas, Feng, David, Dolbeare, Tim, Guillozet-Bongaarts, Angela L, Jegga, Anil G, Aronow, Bruce J, Lee, Chang-Kyu, Bernard, Amy, Glasser, Matthew F, Dierker

Journal:

Nature Neuroscience

Year:

2015

Language:

english

File:

PDF, 7.02 MB

english, 2015

34

SPIE Proceedings [SPIE SPIE Medical Imaging - Lake Buena Vista, FL (Saturday 7 February 2009)] Medical Imaging 2009: Biomedical Applications in Molecular, Structural, and Functional Imaging - Gene expression based mouse brain parcellation using Markov random field regularized non-negative matrix factorization

Pathak, Sayan D., Hu, Xiaoping P., Clough, Anne V., Haynor, David R., Thompson, Carol L., Lein, Ed, Hawrylycz, Michael

Year:

2009

Language:

english

File:

PDF, 15.55 MB

english, 2009

35

Reconstructing the brain: from image stacks to neuron synthesis

Shillcock, Julian C., Hawrylycz, Michael, Hill, Sean, Peng, Hanchuan

Journal:

Brain Informatics

Year:

2016

Language:

english

File:

PDF, 550 KB

english, 2016

36

Inferring cortical function in the mouse visual system through large-scale systems neuroscience

Hawrylycz, Michael, Anastassiou, Costas, Arkhipov, Anton, Berg, Jim, Buice, Michael, Cain, Nicholas, Gouwens, Nathan W., Gratiy, Sergey, Iyer, Ramakrishnan, Lee, Jung Hoon, Mihalas, Stefan, Mitelut, C

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.82 MB

english, 2016

37

SPIE Proceedings [SPIE Medical Imaging - San Diego, CA (Saturday 12 February 2005)] Medical Imaging 2005: Image Processing - Gene expression detection and expression visualization in in situ hybridized cross-sectional images of the mouse brain

Pathak, Sayan, Fitzpatrick, J. Michael, Reinhardt, Joseph M., Lein, Ed, Smith, Simon, Haynor, David R., Hawrylycz, Michael

Year:

2005

Language:

english

File:

PDF, 772 KB

english, 2005

38

Dimension Independence in Exterior Algebra

Michael Hawrylycz

Journal:

Proceedings of the National Academy of Sciences

Year:

1995

Language:

english

File:

PDF, 1005 KB

english, 1995

39

[Lecture Notes in Computer Science] Brain Informatics and Health Volume 9919 || Content-Based fMRI Brain Maps Retrieval

Ascoli, Giorgio A., Hawrylycz, Michael, Ali, Hesham, Khazanchi, Deepak, Shi, Yong

Year:

2016

Language:

english

File:

PDF, 417 KB

english, 2016

40

[Lecture Notes in Computer Science] Brain Informatics and Health Volume 9919 || Relation Inference and Type Identification Based on Brain Knowledge Graph

Ascoli, Giorgio A., Hawrylycz, Michael, Ali, Hesham, Khazanchi, Deepak, Shi, Yong

Year:

2016

Language:

english

File:

PDF, 731 KB

english, 2016

41

[Lecture Notes in Computer Science] Brain Informatics and Health Volume 9919 || Thought Chart: Tracking Dynamic EEG Brain Connectivity with Unsupervised Manifold Learning

Ascoli, Giorgio A., Hawrylycz, Michael, Ali, Hesham, Khazanchi, Deepak, Shi, Yong

Year:

2016

Language:

english

File:

PDF, 1.81 MB

english, 2016

42

[Lecture Notes in Computer Science] Brain Informatics and Health Volume 9919 || Clique Identification and Propagation for Multimodal Brain Tumor Image Segmentation

Ascoli, Giorgio A., Hawrylycz, Michael, Ali, Hesham, Khazanchi, Deepak, Shi, Yong

Year:

2016

Language:

english

File:

PDF, 984 KB

english, 2016

43

[Lecture Notes in Computer Science] Brain Informatics and Health Volume 9919 || Pattern Classification and Analysis of Memory Processing in Depression Using EEG Signals

Ascoli, Giorgio A., Hawrylycz, Michael, Ali, Hesham, Khazanchi, Deepak, Shi, Yong

Year:

2016

Language:

english

File:

PDF, 3.41 MB

english, 2016

44

[Lecture Notes in Computer Science] Brain Informatics and Health Volume 9919 || Brain Knowledge Graph Analysis Based on Complex Network Theory

Ascoli, Giorgio A., Hawrylycz, Michael, Ali, Hesham, Khazanchi, Deepak, Shi, Yong

Year:

2016

Language:

english

File:

PDF, 305 KB

english, 2016

45

[Lecture Notes in Computer Science] Brain Informatics and Health Volume 9919 || Acute Stress Detection Using Recurrence Quantification Analysis of Electroencephalogram (EEG) Signals

Ascoli, Giorgio A., Hawrylycz, Michael, Ali, Hesham, Khazanchi, Deepak, Shi, Yong

Year:

2016

Language:

english

File:

PDF, 2.33 MB

english, 2016

46

[Lecture Notes in Computer Science] Brain Informatics and Health Volume 9919 || A Noninvasive Real-Time Solution for Driving Fatigue Detection Based on Left Prefrontal EEG and Eye Blink

Ascoli, Giorgio A., Hawrylycz, Michael, Ali, Hesham, Khazanchi, Deepak, Shi, Yong

Year:

2016

Language:

english

File:

PDF, 952 KB

english, 2016

47

[Lecture Notes in Computer Science] Brain Informatics and Health Volume 9919 || A Comprehensive Feature and Data Mining Study on Musician Memory Processing Using EEG Signals

Ascoli, Giorgio A., Hawrylycz, Michael, Ali, Hesham, Khazanchi, Deepak, Shi, Yong

Year:

2016

Language:

english

File:

PDF, 1.60 MB

english, 2016

48

[Lecture Notes in Computer Science] Brain Informatics and Health Volume 9919 || Human Emotion Variation Analysis Based on EEG Signal and POMS Scale

Ascoli, Giorgio A., Hawrylycz, Michael, Ali, Hesham, Khazanchi, Deepak, Shi, Yong

Year:

2016

Language:

english

File:

PDF, 2.19 MB

english, 2016

49

[Lecture Notes in Computer Science] Brain Informatics and Health Volume 9919 || Research About Alpha EEG Asymmetry and Self-consciousness in Depression

Ascoli, Giorgio A., Hawrylycz, Michael, Ali, Hesham, Khazanchi, Deepak, Shi, Yong

Year:

2016

Language:

english

File:

PDF, 489 KB

english, 2016

50

[Lecture Notes in Computer Science] Brain Informatics and Health Volume 9919 || A Simple Distance Based Seizure Onset Detection Algorithm Using Common Spatial Patterns

Ascoli, Giorgio A., Hawrylycz, Michael, Ali, Hesham, Khazanchi, Deepak, Shi, Yong

Year:

2016

Language:

english

File:

PDF, 1.49 MB

english, 2016

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