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51

Quantitative Interaction Proteomics and Genome-wide Profiling of Epigenetic Histone Marks and Their Readers

Michiel Vermeulen, H. Christian Eberl, Filomena Matarese, Hendrik Marks, Sergei Denissov, Falk Butter, Kenneth K. Lee, Jesper V. Olsen, Anthony A. Hyman, Henk G. Stunnenberg, Matthias Mann

Journal:

Year:

2010

Language:

english

File:

PDF, 1.59 MB

english, 2010

52

The Transcriptional and Epigenomic Foundations of Ground State Pluripotency

Hendrik Marks, Tüzer Kalkan, Roberta Menafra, Sergey Denissov, Kenneth Jones, Helmut Hofemeister, Jennifer Nichols, Andrea Kranz, A. Francis Stewart, Austin Smith, Hendrik G. Stunnenberg

Journal:

Year:

2012

Language:

english

File:

PDF, 2.26 MB

english, 2012

53

A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos

Robert C. Akkers, Simon J. van Heeringen, Ulrike G. Jacobi, Eva M. Janssen-Megens, Kees-Jan Françoijs, Hendrik G. Stunnenberg, Gert Jan C. Veenstra

Journal:

Developmental Cell

Year:

2009

Language:

english

File:

PDF, 987 KB

english, 2009

54

A TFTC/STAGA Module Mediates Histone H2A and H2B Deubiquitination, Coactivates Nuclear Receptors, and Counteracts Heterochromatin Silencing

Yue Zhao, Guillaume Lang, Saya Ito, Jacques Bonnet, Eric Metzger, Shun Sawatsubashi, Eriko Suzuki, Xavier Le Guezennec, Hendrik G. Stunnenberg, Aleksey Krasnov, Sofia G. Georgieva, Roland Schüle, Ken-

Journal:

Year:

2008

Language:

english

File:

PDF, 1.11 MB

english, 2008

55

Insightful Tales from Single Embryonic Cells

Hendrik Marks, Gert Jan C. Veenstra, Hendrik G. Stunnenberg

Journal:

Year:

2010

Language:

english

File:

PDF, 164 KB

english, 2010

56

Whole-genome DNA methylation profiling using MethylCap-seq

Arie B. Brinkman, Femke Simmer, Kelong Ma, Anita Kaan, Jingde Zhu, Hendrik G. Stunnenberg

Journal:

Year:

2010

Language:

english

File:

PDF, 701 KB

english, 2010

57

Assembly and expression of a synthetic gene encoding the antigen Pfs48/45 of the human malaria parasite Plasmodium falciparum in yeast

Richard L.B Milek, Hendrik G Stunnenberg, Ruud N.H Konings

Journal:

Year:

2000

Language:

english

File:

PDF, 491 KB

english, 2000

58

TAC, a TBP-sans-TAFs Complex Containing the Unprocessed TFIIAαβ Precursor and the TFIIAγ Subunit

Dimitra J. Mitsiou, Hendrik G. Stunnenberg

Journal:

Year:

2000

Language:

english

File:

PDF, 393 KB

english, 2000

59

Uncovering Common Principles in Protein Export of Malaria Parasites

Christof Grüring, Arlett Heiber, Florian Kruse, Sven Flemming, Gianluigi Franci, Sara F. Colombo, Elisa Fasana, Hanno Schoeler, Nica Borgese, Hendrik G. Stunnenberg, Jude M. Przyborski, Tim-Wolf Gilbe

Journal:

Cell Host & Microbe

Year:

2012

Language:

english

File:

PDF, 1.52 MB

english, 2012

60

Placing the Plasmodium falciparum epigenome on the map

Wieteke A.M. Hoeijmakers, Hendrik G. Stunnenberg, Richárd Bártfai

Journal:

Trends in Parasitology

Year:

2012

Language:

english

File:

PDF, 2.62 MB

english, 2012

61

Depletion in nuclei of proteins associated with hnRNA, as a result of inhibition of RNA synthesis

Hendrik G. Stunnenberg, Christos Louis, Constantin E. Sekeris

Journal:

Experimental Cell Research

Year:

1978

Language:

english

File:

PDF, 2.13 MB

english, 1978

62

A myosin-like dimerization helix and an extra-large homeodomain are essential elements of the tripartite DNA binding structure of LFB1

Alfredo Nicosia, Paolo Monaci, Licia Tomei, Raffaele De Francesco, Maurizio Nuzzo, Hendrik Stunnenberg, Riccardo Cortese

Journal:

Year:

1990

Language:

english

File:

PDF, 2.70 MB

english, 1990

63

Promoter melting by a stage-specific vaccinia virus transcription factor is independent of the presence of RNA polymerase

Jan C. Vos, Menno Sasker, Hendrik G. Stunnenberg

Journal:

Year:

1991

Language:

english

File:

PDF, 1.95 MB

english, 1991

64

Cooperativity in transactivation between retinoic acid receptor and TFIID requires an activity analogous to E1A

Anders Berkenstam, Maria del Mar Vivanco Ruiz, Domingo Barettino, Masami Horikoshi, Hendrik G. Stunnenberg

Journal:

Year:

1992

Language:

english

File:

PDF, 2.19 MB

english, 1992

65

An RNA-Seq Strategy to Detect the Complete Coding and Non-Coding Transcriptome Including Full-Length Imprinted Macro ncRNAs

Huang, Ru, Jaritz, Markus, Guenzl, Philipp, Vlatkovic, Irena, Sommer, Andreas, Tamir, Ido M., Marks, Hendrik, Klampfl, Thorsten, Kralovics, Robert, Stunnenberg, Hendrik G., Barlow, Denise P., Pauler,

Journal:

Year:

2011

Language:

english

File:

PDF, 1.30 MB

english, 2011

66

De Novo Mutations in the Genome Organizer CTCF Cause Intellectual Disability

Gregor, Anne, Oti, Martin, Kouwenhoven, Evelyn N., Hoyer, Juliane, Sticht, Heinrich, Ekici, Arif B., Kjaergaard, Susanne, Rauch, Anita, Stunnenberg, Hendrik G., Uebe, Steffen, Vasileiou, Georgia, Reis

Journal:

The American Journal of Human Genetics

Year:

2013

Language:

english

File:

PDF, 1.08 MB

english, 2013

67

CDK2AP1/DOC-1 is a bona fide subunit of the Mi-2/NuRD complex

Spruijt, Cornelia G., Bartels, Stefanie J. J., Brinkman, Arie B., Tjeertes, Jorrit V., Poser, Ina, Stunnenberg, Hendrik G., Vermeulen, Michiel

Journal:

Molecular BioSystems

Year:

2010

Language:

english

File:

PDF, 1.52 MB

english, 2010

68

Transcription regulation and chromatin structure in the pluripotent ground state

Marks, Hendrik, Stunnenberg, Hendrik G.

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

Year:

2014

Language:

english

File:

PDF, 1.22 MB

english, 2014

69

Genomics meets proteomics: identifying the culprits in disease

Stunnenberg, Hendrik G., Hubner, Nina C.

Journal:

Year:

2014

Language:

english

File:

PDF, 797 KB

english, 2014

70

Improved method for PCR-mediated site-directed mutagenesis

Barettino, Domingo, Feigenbutz, Monika, Valcárcel, Rafael, Stunnenberg, Hendrik G.

Journal:

Nucleic Acids Research

Year:

1994

Language:

english

File:

PDF, 863 KB

english, 1994

71

Cloning and expression of a mouse cDNA encoding p59, an immunophilin that associates with the glucocorticoid receptor

Schmitt, Jacky, Pohl, Jens, Stunnenberg, Hendrik G.

Journal:

Year:

1993

Language:

english

File:

PDF, 686 KB

english, 1993

72

Biochemical complementation with RNA in the Xenopus oocyte: A small rna is required for the generation of 3′ histone mRNA termini

Galli, Gabriella, Hofstetter, Hans, Stunnenberg, Hendrik G., Bimstiel, Max L.

Journal:

Year:

1983

Language:

english

File:

PDF, 1.93 MB

english, 1983

73

[Part 1: Biological Sciences] || Bioassay for Components Regulating Eukaryotic Gene Expression: A Chromosomal Factor Involved in the Generation of Histone mRNA 3′Termini

Hendrik G. Stunnenberg and Max L. Birnstiel

Journal:

Proceedings of the National Academy of Sciences

Year:

1982

Language:

english

File:

PDF, 1.29 MB

english, 1982

74

Otx2 and Oct4 Drive Early Enhancer Activation during Embryonic Stem Cell Transition from Naive Pluripotency

Yang, Shen-Hsi, Kalkan, Tüzer, Morissroe, Claire, Marks, Hendrik, Stunnenberg, Hendrik, Smith, Austin, Sharrocks, Andrew D.

Journal:

Year:

2014

Language:

english

File:

PDF, 4.75 MB

english, 2014

75

Fibril Formation by Triblock Copolymers of Silklike β-Sheet Polypeptides and Poly(ethylene glycol)

Smeenk, Jurgen M., Schön, Peter, Otten, Matthijs B. J., Speller, Sylvia, Stunnenberg, Hendrik G., van Hest, Jan C. M.

Journal:

Year:

2006

Language:

english

File:

PDF, 873 KB

english, 2006

76

Age-related variations in the methylome associated with gene expression in human monocytes and T cells

Reynolds, Lindsay M., Taylor, Jackson R., Ding, Jingzhong, Lohman, Kurt, Johnson, Craig, Siscovick, David, Burke, Gregory, Post, Wendy, Shea, Steven, Jacobs Jr., David R., Stunnenberg, Hendrik, Kritch

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 1.34 MB

english, 2014

77

Monoclonal Antibodies Directed against the Amino-Terminal Domain of Human TBP Cross-React with TBP from Other Species

RUPPERT, SUSAN M. LOBO, McCULLOCH, VICKI, MEYER, MARKUS, BAUTISTA, CARMELITA, FALKOWSKI, MARGARET, STUNNENBERG, HENDRIK G., HERNANDEZ, NOURIA

Journal:

Year:

1996

Language:

english

File:

PDF, 12.49 MB

english, 1996

78

H2A.Z/H2B.Z double-variant nucleosomes inhabit the AT-rich promoter regions of the P lasmodium falciparum genome

Hoeijmakers, Wieteke A. M., Salcedo-Amaya, Adriana M., Smits, Arne H., Françoijs, Kees-Jan, Treeck, Moritz, Gilberger, Tim-Wolf, Stunnenberg, Hendrik G., Bártfai, Richárd

Journal:

Molecular Microbiology

Year:

2013

Language:

english

File:

PDF, 572 KB

english, 2013

79

A Quantitative Proteomics Tool To Identify DNA–Protein Interactions in Primary Cells or Blood

Hubner, Nina C., Nguyen, Luan N., Hornig, Nadine C., Stunnenberg, Hendrik G.

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 5.18 MB

english, 2015

80

Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis

Bogdanović, Ozren, Long, Steven W., van Heeringen, Simon J., Brinkman, Arie B., Gómez-Skarmeta, Jose Luis, Stunnenberg, Hendrik G., Jones, Peter L., Veenstra, Gert Jan C.

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 1.65 MB

english, 2011

81

Three Members of the 6-cys Protein Family of Plasmodium Play a Role in Gamete Fertility

van Dijk, Melissa R., van Schaijk, Ben C. L., Khan, Shahid M., van Dooren, Maaike W., Ramesar, Jai, Kaczanowski, Szymon, van Gemert, Geert-Jan, Kroeze, Hans, Stunnenberg, Hendrik G., Eling, Wijnand M.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.54 MB

english, 2010

82

MBD2 and MBD3: elusive functions and mechanisms

Menafra, Roberta, Stunnenberg, Hendrik G.

Journal:

Frontiers in Genetics

Year:

2014

Language:

english

File:

PDF, 826 KB

english, 2014

83

Integrative Analysis of Deep Sequencing Data Identifies Estrogen Receptor Early Response Genes and Links ATAD3B to Poor Survival in Breast Cancer

Ovaska, Kristian, Matarese, Filomena, Grote, Korbinian, Charapitsa, Iryna, Cervera, Alejandra, Liu, Chengyu, Reid, George, Seifert, Martin, Stunnenberg, Hendrik G., Hautaniemi, Sampsa, Tucker-Kellogg,

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 898 KB

english, 2013

84

A Major Role for the Plasmodium falciparum ApiAP2 Protein PfSIP2 in Chromosome End Biology

Flueck, Christian, Bartfai, Richard, Niederwieser, Igor, Witmer, Kathrin, Alako, Blaise T. F., Moes, Suzette, Bozdech, Zbynek, Jenoe, Paul, Stunnenberg, Hendrik G., Voss, Till S., Kim, Kami

Journal:

Year:

2010

Language:

english

File:

PDF, 1.92 MB

english, 2010

85

Epigenetic Regulation of Learning and Memory by Drosophila EHMT/G9a

Kramer, Jamie M., Kochinke, Korinna, Oortveld, Merel A. W., Marks, Hendrik, Kramer, Daniela, de Jong, Eiko K., Asztalos, Zoltan, Westwood, J. Timothy, Stunnenberg, Hendrik G., Sokolowski, Marla B., Ke

Journal:

Year:

2011

Language:

english

File:

PDF, 2.72 MB

english, 2011

86

Human androgen receptor expressed in HeLa cells activates transcription in vitro

De Vos, Piet, Schmitt, Jacky, Verhoeven, Guido, Stunnenberg, Hendrik G.

Journal:

Nucleic Acids Research

Year:

1994

Language:

english

File:

PDF, 2.03 MB

english, 1994

87

Inference of RNA Polymerase II Transcription Dynamics from Chromatin Immunoprecipitation Time Course Data

wa Maina, Ciira, Honkela, Antti, Matarese, Filomena, Grote, Korbinian, Stunnenberg, Hendrik G., Reid, George, Lawrence, Neil D., Rattray, Magnus, Sinha, Saurabh

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 3.03 MB

english, 2014

88

The glucocorticoid receptor hormone binding domain mediates transcriptional activation in vitro in the absence of ligand

Schmitt, Jacky, Stunnenberg, Hendrik G.

Journal:

Nucleic Acids Research

Year:

1993

Language:

english

File:

PDF, 7.15 MB

english, 1993

89

Rapid and Efficient Purification of Native Histidine-Tagged Protein Expressed by Recombinant Vaccinia Virus

Ralf Janknecht, Guy de Martynoff, Jueren Lou, Robert A. Hipskind, Alfred Nordheim and Hendrik G. Stunnenberg

Journal:

Proceedings of the National Academy of Sciences

Year:

1991

Language:

english

File:

PDF, 1.31 MB

english, 1991

90

Cis-acting sequences affecting the length of the poly(A) head of vaccinia virus late transcripts

de Magistris, Luisa, Stunnenberg, Hendrik G.

Journal:

Nucleic Acids Research

Year:

1988

Language:

english

File:

PDF, 3.64 MB

english, 1988

91

GATA3-dependent cellular reprogramming requires activation-domain dependent recruitment of a chromatin remodeler

Takaku, Motoki, Grimm, Sara A., Shimbo, Takashi, Perera, Lalith, Menafra, Roberta, Stunnenberg, Hendrik G., Archer, Trevor K., Machida, Shinichi, Kurumizaka, Hitoshi, Wade, Paul A.

Journal:

Year:

2016

Language:

english

File:

PDF, 3.43 MB

english, 2016

92

Isolation and Functional Characterization of Two Distinct Sexual-Stage-Specific Promoters of the Human Malaria Parasite Plasmodium falciparum

Dechering, Koen J., Kaan, Anita M., Mbacham, Wilfred, Wirth, Dyann F., Eling, Wijnand, Konings, Ruud N. H., Stunnenberg, Hendrik G.

Journal:

Molecular and Cellular Biology

Year:

1999

Language:

english

File:

PDF, 800 KB

english, 1999

93

Epigenetic memory: A macrophage perspective

Logie, Colin, Stunnenberg, Hendrik G.

Journal:

Seminars in Immunology

Year:

2016

Language:

english

File:

PDF, 1.76 MB

english, 2016

94

Information recovery from low coverage whole-genome bisulfite sequencing

Libertini, Emanuele, Heath, Simon C., Hamoudi, Rifat A., Gut, Marta, Ziller, Michael J., Czyz, Agata, Ruotti, Victor, Stunnenberg, Hendrik G., Frontini, Mattia, Ouwehand, Willem H., Meissner, Alexande

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.13 MB

english, 2016

95

Genome-wide epigenomic profiling for biomarker discovery

Dirks, René A. M., Stunnenberg, Hendrik G., Marks, Hendrik

Journal:

Clinical Epigenetics

Year:

2016

Language:

english

File:

PDF, 1.06 MB

english, 2016

96

Tracking the embryonic stem cell transition from ground state pluripotency

Kalkan, Tüzer, Olova, Nelly, Roode, Mila, Mulas, Carla, Lee, Heather J., Nett, Isabelle, Marks, Hendrik, Walker, Rachael, Stunnenberg, Hendrik G., Lilley, Kathryn S., Nichols, Jennifer, Reik, Wolf, Be

Journal:

Development (The Company of Biologists)

Year:

2017

Language:

english

File:

PDF, 4.39 MB

english, 2017

97

Uric acid priming in human monocytes is driven by the AKT–PRAS40 autophagy pathway

Crişan, Tania O., Cleophas, Maartje C. P., Novakovic, Boris, Erler, Kathrin, van de Veerdonk, Frank L., Stunnenberg, Hendrik G., Netea, Mihai G., Dinarello, Charles A., Joosten, Leo A. B.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.22 MB

english, 2017

98

Transcriptional and epigenetic control in mouse pluripotency: lessons from in vivo and in vitro studies

Habibi, Ehsan, Stunnenberg, Hendrik G

Journal:

Current Opinion in Genetics & Development

Year:

2017

Language:

english

File:

PDF, 933 KB

english, 2017

99

Blood monocyte transcriptome and epigenome analyses reveal loci associated with human atherosclerosis

Liu, Yongmei, Reynolds, Lindsay M., Ding, Jingzhong, Hou, Li, Lohman, Kurt, Young, Tracey, Cui, Wei, Huang, Zhiqing, Grenier, Carole, Wan, Ma, Stunnenberg, Hendrik G., Siscovick, David, Hou, Lifang, P

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 1.42 MB

english, 2017

100

I Remember You: Epigenetic Priming in Epithelial Stem Cells

Novakovic, Boris, Stunnenberg, Hendrik G.

Journal:

Year:

2017

Language:

english

File:

PDF, 769 KB

english, 2017