Hoadley, Katherine: search on Z-Library

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1

Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin

Hoadley, Katherine A., Yau, Christina, Wolf, Denise M., Cherniack, Andrew D., Tamborero, David, Ng, Sam, Leiserson, Max D.M., Niu, Beifang, McLellan, Michael D., Uzunangelov, Vladislav, Zhang, Jiashan

Journal:

Year:

2014

Language:

english

File:

PDF, 4.59 MB

english, 2014

2

Joint and individual variation explained (JIVE) for integrated analysis of multiple data types

Lock, Eric F., Hoadley, Katherine A., Marron, J. S., Nobel, Andrew B.

Journal:

The Annals of Applied Statistics

Year:

2013

Language:

english

File:

PDF, 1.34 MB

english, 2013

3

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

Liu, Jianfang, Lichtenberg, Tara, Hoadley, Katherine A., Poisson, Laila M., Lazar, Alexander J., Cherniack, Andrew D., Kovatich, Albert J., Benz, Christopher C., Levine, Douglas A., Lee, Adrian V., Om

Journal:

Year:

2018

Language:

english

File:

PDF, 6.22 MB

english, 2018

4

Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1

Roel G.W. Verhaak, Katherine A. Hoadley, Elizabeth Purdom, Victoria Wang, Yuan Qi, Matthew D. Wilkerson, C. Ryan Miller, Li Ding, Todd Golub, Jill P. Mesirov, Gabriele Alexe, Michael Lawrence, Michael

Journal:

Year:

2010

Language:

english

File:

PDF, 1.31 MB

english, 2010

5

Genomic Analysis of Immune Cell Infiltrates Across 11 Tumor Types

Iglesia, Michael D., Parker, Joel S., Hoadley, Katherine A., Serody, Jonathan S., Perou, Charles M., Vincent, Benjamin G.

Journal:

JNCI Journal of the National Cancer Institute

Year:

2016

Language:

english

File:

PDF, 2.59 MB

english, 2016

6

Quantitative MRI radiomics in the prediction of molecular classifications of breast cancer subtypes in the TCGA/TCIA data set

Li, Hui, Zhu, Yitan, Burnside, Elizabeth S, Huang, Erich, Drukker, Karen, Hoadley, Katherine A, Fan, Cheng, Conzen, Suzanne D, Zuley, Margarita, Net, Jose M, Sutton, Elizabeth, Whitman, Gary J, Morris

Journal:

npj Breast Cancer

Year:

2016

Language:

english

File:

PDF, 1.53 MB

english, 2016

7

Use of Molecular Tools to Identify Patients With Indolent Breast Cancers With Ultralow Risk Over 2 Decades

Esserman, Laura J., Yau, Christina, Thompson, Carlie K., van 't Veer, Laura J., Borowsky, Alexander D., Hoadley, Katherine A., Tobin, Nicholas P., Nordenskjöld, Bo, Fornander, Tommy, Stål, Olle, Benz,

Journal:

Year:

2017

Language:

english

File:

PDF, 441 KB

english, 2017

8

Pathological response in a triple negative breast cancer cohort treated with neoadjuvant carboplatin and docetaxel according to Lehmann's refined classification

Echavarría, Isabel, López-Tarruella, Sara, Picornell, Antoni C., Garcia-Saenz, Jose A, Jerez-Gilarranz, Yolanda, Hoadley, Katherine A., Gomez, Henry, Moreno, Fernando, del Monte-Millán, Maria, Marquez

Journal:

Clinical Cancer Research

Year:

2018

Language:

english

File:

PDF, 875 KB

english, 2018

9

Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer

Hoadley, Katherine A., Yau, Christina, Hinoue, Toshinori, Wolf, Denise M., Lazar, Alexander J., Drill, Esther, Shen, Ronglai, Taylor, Alison M., Cherniack, Andrew D., Thorsson, Vésteinn, Akbani, Rehan

Journal:

Year:

2018

Language:

english

File:

PDF, 7.49 MB

english, 2018

10

Bladder Cancer Molecular Taxonomy: Summary from a Consensus Meeting

Lerner, Seth P., McConkey, David J., Hoadley, Katherine A., Chan, Keith S., Kim, William Y., Radvanyi, François, Höglund, Mattias, Real, Francisco X.

Journal:

Year:

2016

Language:

english

File:

PDF, 422 KB

english, 2016

11

Intratumor Heterogeneity of the Estrogen Receptor and the Long-term Risk of Fatal Breast Cancer

Lindström, Linda S, Yau, Christina, Czene, Kamila, Thompson, Carlie K, Hoadley, Katherine A, van't Veer, Laura J, Balassanian, Ron, Bishop, John W, Carpenter, Philip M, Chen, Yunn-Yi, Datnow, Brian, H

Journal:

JNCI Journal of the National Cancer Institute

Year:

2018

Language:

english

File:

PDF, 708 KB

english, 2018

12

Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer

Robertson, A. Gordon, Kim, Jaegil, Al-Ahmadie, Hikmat, Bellmunt, Joaquim, Guo, Guangwu, Cherniack, Andrew D., Hinoue, Toshinori, Laird, Peter W., Hoadley, Katherine A., Akbani, Rehan, Castro, Mauro A.

Journal:

Year:

2018

Language:

english

File:

PDF, 102 KB

english, 2018

13

Development of an immuno tandem mass spectrometry (iMALDI) assay for EGFR diagnosis

Jian Jiang, Carol E. Parker, Katherine A. Hoadley, Charles M. Perou, Gunnar Boysen, Christoph H. Borchers

Journal:

PROTEOMICS - Clinical Applications

Year:

2007

Language:

english

File:

PDF, 380 KB

english, 2007

14

RNA expression analysis of formalin-fixed paraffin-embedded tumors

Penland, Shannon K, Keku, Temitope O, Torrice, Chad, He, Xiaping, Krishnamurthy, Janakiraman, Hoadley, Katherine A, Woosley, John T, Thomas, Nancy E, Perou, Charles M, Sandler, Robert S, Sharpless, No

Journal:

Laboratory Investigation

Year:

2007

Language:

english

File:

PDF, 5.13 MB

english, 2007

15

EGFR associated expression profiles vary with breast tumor subtype

Katherine A Hoadley, Victor J Weigman, Cheng Fan, Lynda R Sawyer, Xiaping He, Melissa A Troester, Carolyn I Sartor, Thais Rieger-House, Philip S Bernard, Lisa A Carey, Charles M Perou

Journal:

Year:

2007

Language:

english

File:

PDF, 1.31 MB

english, 2007

16

Gene expression patterns associated with p53 status in breast cancer

Melissa A Troester, Jason I Herschkowitz, Daniel S Oh, Xiaping He, Katherine A Hoadley, Claire S Barbier, Charles M Perou

Journal:

Year:

2006

Language:

english

File:

PDF, 652 KB

english, 2006

17

Impact of stromal microenvironment on metabolic phenotypes in breast cancer: evidence for stroma-influenced Warburg effect

Brauer, Heather, Makowski, Liza, Hoadley, Katherine A, Lang, Lindsay J, Freemerman, Alex J, Perou, Charles M, Troester, Melissa A

Journal:

BMC Proceedings

Year:

2012

Language:

english

File:

PDF, 170 KB

english, 2012

18

Correction: An integration of complementary strategies for gene-expression analysis to reveal novel therapeutic opportunities for breast cancer

Andrea H Bild, Joel S Parker, Adam M Gustafson, Chaitanya R Acharya, Katherine A Hoadley, Carey Anders, P Kelly Marcom, Lisa A Carey, Anil Potti, Joseph R Nevins, Charles M Perou

Journal:

Breast Cancer Research

Year:

2011

Language:

english

File:

PDF, 106 KB

english, 2011

19

The molecular diversity of Luminal A breast tumors

Ciriello, Giovanni, Sinha, Rileen, Hoadley, Katherine A., Jacobsen, Anders S., Reva, Boris, Perou, Charles M., Sander, Chris, Schultz, Nikolaus

Journal:

Breast Cancer Research and Treatment

Year:

2013

Language:

english

File:

PDF, 1.04 MB

english, 2013

20

BreakTrans: uncovering the genomic architecture of gene fusions

Chen, Ken, Navin, Nicholas E, Wang, Yong, Schmidt, Heather K, Wallis, John W, Niu, Beifang, Fan, Xian, Zhao, Hao, McLellan, Michael D, Hoadley, Katherine A, Mardis, Elaine R, Ley, Timothy J, Perou, Ch

Journal:

Year:

2013

Language:

english

File:

PDF, 406 KB

english, 2013

21

Toxicogenomics || Prediction of Toxicant-Specific Gene Expression Signatures after Chemotherapeutic Treatment of Breast Cell Lines

Melissa A. Troester, Katherine A. Hoadley, Joel S. Parker and Charles M. Perou

Journal:

Environmental Health Perspectives

Year:

2004

Language:

english

File:

PDF, 2.30 MB

english, 2004

22

Molecular features of the basal-like breast cancer subtype based onBRCA1mutation status

Aleix Prat,Cristina Cruz,Katherine A. Hoadley…

Journal:

Breast Cancer Research and Treatment

Year:

2014

Language:

english

File:

PDF, 398 KB

english, 2014

23

Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling

Wei Zhao,Xiaping He,Katherine A Hoadley,Joel S Parker,David Neil Hayes…

Journal:

Year:

2014

Language:

english

File:

PDF, 349 KB

english, 2014

24

Proteomic profiling of patient-derived glioblastoma xenografts identifies a subset with activated EGFR: implications for drug development

Brown, Kristine E., Chagoya, Gustavo, Kwatra, Shawn G., Yen, Timothy, Keir, Stephen T., Cooter, Mary, Hoadley, Katherine A., Rasheed, Ahmed, Lipp, Eric S., Mclendon, Roger, Ali-Osman, Francis, Bigner,

Journal:

Journal of Neurochemistry

Year:

2015

Language:

english

File:

PDF, 376 KB

english, 2015

25

Response and survival of breast cancer intrinsic subtypes following multi-agent neoadjuvant chemotherapy

Prat, Aleix, Fan, Cheng, Fernández, Aranzazu, Hoadley, Katherine A., Martinello, Rossella, Vidal, Maria, Viladot, Margarita, Pineda, Estela, Arance, Ana, Muñoz, Montserrat, Paré, Laia, Cheang, Maggie

Journal:

Year:

2015

Language:

english

File:

PDF, 1.21 MB

english, 2015

26

Oncometabolite D-2-Hydroxyglutarate Inhibits ALKBH DNA Repair Enzymes and Sensitizes IDH Mutant Cells to Alkylating Agents

Wang, Pu, Wu, Jing, Ma, Shenghong, Zhang, Lei, Yao, Jun, Hoadley, Katherine A., Wilkerson, Matthew D., Perou, Charles M., Guan, Kun-Liang, Ye, Dan, Xiong, Yue

Journal:

Year:

2015

Language:

english

File:

PDF, 3.66 MB

english, 2015

27

MR Imaging Radiomics Signatures for Predicting the Risk of Breast Cancer Recurrence as Given by Research Versions of MammaPrint, Oncotype DX, and PAM50 Gene Assays

Li, Hui, Zhu, Yitan, Burnside, Elizabeth S., Drukker, Karen, Hoadley, Katherine A., Fan, Cheng, Conzen, Suzanne D., Whitman, Gary J., Sutton, Elizabeth J., Net, Jose M., Ganott, Marie, Huang, Erich, M

Journal:

Year:

2016

Language:

english

File:

PDF, 1003 KB

english, 2016

28

The Cancer Genome Atlas Project on Muscle-invasive Bladder Cancer

Lerner, Seth P., Weinstein, John, Kwiatkowski, David, Kim, Jaegil, Robertson, Gordon, Hoadley, Katherine A., Akbani, Rehan, Creighton, Chad

Journal:

European Urology Focus

Year:

2015

Language:

english

File:

PDF, 382 KB

english, 2015

29

Identification of mRNA isoform switching in breast cancer

Zhao, Wei, Hoadley, Katherine A., Parker, Joel S., Perou, Charles M.

Journal:

Year:

2016

Language:

english

File:

PDF, 3.69 MB

english, 2016

30

Nuclear Localized LSR: A Novel Regulator of Breast Cancer Behavior and Tumorigenesis

Reaves, Denise K., Hoadley, Katherine A., Fagan-Solis, Katerina D., Jima, Dereje D., Bereman, Michael, Thorpe, Lynnelle, Hicks, Jyla, McDonald, David, Troester, Melissa A., Perou, Charles M., Fleming,

Journal:

Molecular Cancer Research

Year:

2017

Language:

english

File:

PDF, 7.68 MB

english, 2017

31

DNA defects, epigenetics, and gene expression in cancer-adjacent breast: a study from The Cancer Genome Atlas

Troester, Melissa A, Hoadley, Katherine A, D’Arcy, Monica, Cherniack, Andrew D, Stewart, Chip, Koboldt, Daniel C, Robertson, A Gordon, Mahurkar, Swapna, Shen, Hui, Wilkerson, Matthew D, Sandhu, Rupnin

Journal:

npj Breast Cancer

Year:

2016

Language:

english

File:

PDF, 1.81 MB

english, 2016

32

Amplification ofSOX4promotes PI3K/Akt signaling in human breast cancer

Mehta, Gaurav A., Parker, Joel S., Silva, Grace O., Hoadley, Katherine A., Perou, Charles M., Gatza, Michael L.

Journal:

Breast Cancer Research and Treatment

Year:

2017

Language:

english

File:

PDF, 2.85 MB

english, 2017

33

Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH -Mutant Molecular Profiles

Farshidfar, Farshad, Zheng, Siyuan, Gingras, Marie-Claude, Newton, Yulia, Shih, Juliann, Robertson, A. Gordon, Hinoue, Toshinori, Hoadley, Katherine A., Gibb, Ewan A., Roszik, Jason, Covington, Kyle R

Journal:

Year:

2017

Language:

english

File:

PDF, 7.32 MB

english, 2017

34

Age at diagnosis, obesity, smoking, and molecular subtypes in muscle-invasive bladder cancer

Sun, Xuezheng, Hoadley, Katherine A., Kim, William Y., Furberg, Helena, Olshan, Andrew F., Troester, Melissa A.

Journal:

Cancer Causes & Control

Year:

2017

Language:

english

File:

PDF, 617 KB

english, 2017

35

Patterns of cell cycle checkpoint deregulation associated with intrinsic molecular subtypes of human breast cancer cells

Bower, Jacquelyn J., Vance, Leah D., Psioda, Matthew, Smith-Roe, Stephanie L., Simpson, Dennis A., Ibrahim, Joseph G., Hoadley, Katherine A., Perou, Charles M., Kaufmann, William K.

Journal:

npj Breast Cancer

Year:

2017

Language:

english

File:

PDF, 2.70 MB

english, 2017

36

Comparison of Breast Cancer Molecular Features and Survival by African and European Ancestry in The Cancer Genome Atlas

Huo, Dezheng, Hu, Hai, Rhie, Suhn K., Gamazon, Eric R., Cherniack, Andrew D., Liu, Jianfang, Yoshimatsu, Toshio F., Pitt, Jason J., Hoadley, Katherine A., Troester, Melissa, Ru, Yuanbin, Lichtenberg,

Journal:

Year:

2017

Language:

english

File:

PDF, 419 KB

english, 2017

37

Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH -Mutant Molecular Profiles

Farshidfar, Farshad, Zheng, Siyuan, Gingras, Marie-Claude, Newton, Yulia, Shih, Juliann, Robertson, A. Gordon, Hinoue, Toshinori, Hoadley, Katherine A., Gibb, Ewan A., Roszik, Jason, Covington, Kyle R

Journal:

Year:

2017

Language:

english

File:

PDF, 2.05 MB

english, 2017

38

Non-Coding RNA modulate molecular subtype biology in muscle invasive bladder cancer (MIBC) and are independently associated with survival

Robertson, A. Gordon, Gibb, Ewan A., Castro, Mauro, Carvalho, Benilton de Sa, Kim, Jaegil, Al-Ahmadie, Hikmat, Bellmunt, Joaquim, Hoadley, Katherine, Weinstein, John N., Kwiatkowski, David, Lerner, Se

Journal:

Urologic Oncology: Seminars and Original Investigations

Year:

2017

Language:

english

File:

PDF, 45 KB

english, 2017

39

Reproductive risk factor associations with lobular and ductal carcinoma in the Carolina Breast Cancer Study

Williams, Lindsay A., Nichols, Hazel B., Hoadley, Katherine A., Tse, Chiu Kit, Geradts, Joseph, Bell, Mary Elizabeth, Perou, Charles M., Love, Michael I., Olshan, Andrew F., Troester, Melissa A.

Journal:

Cancer Causes & Control

Year:

2017

Language:

english

File:

PDF, 744 KB

english, 2017

40

The Integrated Genomic Landscape of Thymic Epithelial Tumors

Radovich, Milan, Pickering, Curtis R., Felau, Ina, Ha, Gavin, Zhang, Hailei, Jo, Heejoon, Hoadley, Katherine A., Anur, Pavana, Zhang, Jiexin, McLellan, Mike, Bowlby, Reanne, Matthew, Thomas, Danilova,

Journal:

Year:

2018

Language:

english

File:

PDF, 4.04 MB

english, 2018

41

Tumor Evolution in Two Patients with Basal-like Breast Cancer: A Retrospective Genomics Study of Multiple Metastases

Hoadley, Katherine A., Siegel, Marni B., Kanchi, Krishna L., Miller, Christopher A., Ding, Li, Zhao, Wei, He, Xiaping, Parker, Joel S., Wendl, Michael C., Fulton, Robert S., Demeter, Ryan T., Wilson,

Journal:

Year:

2016

Language:

english

File:

PDF, 3.51 MB

english, 2016

42

Targeting EGFR Induced Oxidative Stress by PARP1 Inhibition in Glioblastoma Therapy

Nitta, Masayuki, Kozono, David, Kennedy, Richard, Stommel, Jayne, Ng, Kimberly, Zinn, Pascal O., Kushwaha, Deepa, Kesari, Santosh, Furnari, Frank, Hoadley, Katherine A., Chin, Lynda, DePinho, Ronald A

Journal:

Year:

2010

Language:

english

File:

PDF, 696 KB

english, 2010

43

Potential Tumor Suppressor Role for the c-Myb Oncogene in Luminal Breast Cancer

Thorner, Aaron R., Parker, Joel S., Hoadley, Katherine A., Perou, Charles M., Blagosklonny, Mikhail V.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.07 MB

english, 2010

44

Correction: Molecular Subtypes in Head and Neck Cancer Exhibit Distinct Patterns of Chromosomal Gain and Loss of Canonical Cancer Genes

Walter, Vonn, Yin, Xiaoying, Wilkerson, Matthew D., Cabanski, Christopher R., Zhao, Ni, Du, Ying, Ang, Mei Kim, Hayward, Michele C., Salazar, Ashley H., Hoadley, Katherine A., Fritchie, Karen, Sailey,

Journal:

Year:

2018

Language:

english

File:

PDF, 378 KB

english, 2018

45

National Cancer Institute Biospecimen Evidence-Based Practices: Harmonizing Procedures for Nucleic Acid Extraction from Formalin-Fixed, Paraffin-Embedded Tissue

Greytak, Sarah R., Engel, Kelly B., Zmuda, Erik, Casas-Silva, Esmeralda, Guan, Ping, Hoadley, Katherine A., Mungall, Andrew J., Wheeler, David A., Doddapaneni, Harsha V., Moore, Helen M.

Journal:

Biopreservation and Biobanking

Year:

2018

Language:

english

File:

PDF, 89 KB

english, 2018

46

TP53 protein levels, RNA-based pathway assessment, and race among invasive breast cancer cases

Williams, Lindsay A., Butler, Ebonee N., Sun, Xuezheng, Allott, Emma H., Cohen, Stephanie M., Fuller, Ashley M., Hoadley, Katherine A., Perou, Charles M., Geradts, Joseph, Olshan, Andrew F., Troester,

Journal:

npj Breast Cancer

Year:

2018

Language:

english

File:

PDF, 537 KB

english, 2018

47

Integrated analysis of RNA and DNA from a phase III trial of trastuzumab-based neoadjuvant chemotherapy identifies response predictors in HER2-positive breast cancer

Tanioka, Maki, Fan, Cheng, Parker, Joel S., Hoadley, Katherine A., Hu, Zhiyuan, Li, Yan, Hyslop, Terry M., Pitcher, Brandelyn N, Soloway, Matthew G, Spears, Patricia A, Henry, N. Lynn, Tolaney, Sara,

Journal:

Clinical Cancer Research

Year:

2018

Language:

english

File:

PDF, 8.74 MB

english, 2018

48

Tumor mutational burden is a determinant of immune-mediated survival in breast cancer

Thomas, Alexandra, Routh, Eric D., Pullikuth, Ashok, Jin, Guangxu, Su, Jing, Chou, Jeff W., Hoadley, Katherine A., Print, Cristin, Knowlton, Nick, Black, Michael A., Demaria, Sandra, Wang, Ena, Bedogn

Journal:

Year:

2018

Language:

english

File:

PDF, 4.52 MB

english, 2018

49

Integrative Molecular Characterization of Malignant Pleural Mesothelioma

Hmeljak, Julija, Sanchez-Vega, Francisco, Hoadley, Katherine A., Shih, Juliann, Stewart, Chip, Heiman, David I, Tarpey, Patrick, Danilova, Ludmila, Drill, Esther, Gibb, Ewan A, Bowlby, Reanne, Kanchi,

Journal:

Cancer Discovery

Year:

2018

Language:

english

File:

PDF, 15.55 MB

english, 2018

50

PAM50 Molecular Intrinsic Subtypes in the Nurses' Health Study Cohorts

Kensler, Kevin H, Sankar, Venkat N, Wang, Jun, Zhang, Xuehong, Rubadue, Christopher A, Baker, Gabrielle M, Parker, Joel S., Hoadley, Katherine A., Stancu, Andreea L, Pyle, Michael E, Collins, Laura C.

Journal:

Cancer Epidemiology Biomarkers & Prevention

Year:

2018

Language:

english

File:

PDF, 2.20 MB

english, 2018

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