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51

Microarray analysis of Streptococcus pneumoniae gene expression changes to human lung epithelial cells

Song, Xin-Ming, Connor, Wayne, Jalal, Shakiba, Hokamp, Karsten, Potter, Andrew A.

Journal:

Canadian Journal of Microbiology

Year:

2008

Language:

english

File:

PDF, 316 KB

english, 2008

52

Genome-Wide Analysis of Phosphorylated PhoP Binding to Chromosomal DNA Reveals Several Novel Features of the PhoPR-Mediated Phosphate Limitation Response in Bacillus subtilis

Salzberg, Letal I., Botella, Eric, Hokamp, Karsten, Antelmann, Haike, Maaß, Sandra, Becher, Dörte, Noone, David, Devine, Kevin M., Silhavy, T. J.

Journal:

Journal of Bacteriology

Year:

2015

Language:

english

File:

PDF, 2.27 MB

english, 2015

53

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

Kroger, C., Dillon, S. C., Cameron, A. D. S., Papenfort, K., Sivasankaran, S. K., Hokamp, K., Chao, Y., Sittka, A., Hebrard, M., Handler, K., Colgan, A., Leekitcharoenphon, P., Langridge, G. C., Lohan

Journal:

Proceedings of the National Academy of Sciences

Year:

2012

Language:

english

File:

PDF, 1.85 MB

english, 2012

54

Cell envelope gene expression in phosphate-limited Bacillus subtilis cells

Botella, E., Hubner, S., Hokamp, K., Hansen, A., Bisicchia, P., Noone, D., Powell, L., Salzberg, L. I., Devine, K. M.

Journal:

Microbiology (Society for General Microbiology)

Year:

2011

Language:

english

File:

PDF, 1.55 MB

english, 2011

55

Comparative Transcript Profiling of Candida albicans and Candida dubliniensis Identifies SFL2, a C. albicans Gene Required for Virulence in a Reconstituted Epithelial Infection Model

Spiering, M. J., Moran, G. P., Chauvel, M., MacCallum, D. M., Higgins, J., Hokamp, K., Yeomans, T., d'Enfert, C., Coleman, D. C., Sullivan, D. J.

Journal:

Eukaryotic Cell

Year:

2010

Language:

english

File:

PDF, 1.99 MB

english, 2010

56

A Model System for Studying the Transcriptomic and Physiological Changes Associated with Mammalian Host-Adaptation by Leptospira interrogans Serovar Copenhageni

Caimano, Melissa J., Sivasankaran, Sathesh K., Allard, Anna, Hurley, Daniel, Hokamp, Karsten, Grassmann, André A., Hinton, Jay C. D., Nally, Jarlath E., Coburn, Jenifer

Journal:

Year:

2014

Language:

english

File:

PDF, 1.33 MB

english, 2014

57

Optical In Vivo Imaging of the Alarmin S100A9 in Tumor Lesions Allows for Estimation of the Individual Malignant Potential by Evaluation of Tumor-Host Cell Interaction

Becker, A., Hokamp, N. G., Zenker, S., Flores-Borja, F., Barzcyk, K., Varga, G., Roth, J., Geyer, C., Heindel, W., Bremer, C., Vogl, T., Eisenblaetter, M.

Journal:

Journal of Nuclear Medicine

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

58

Analysis of the Bovine Monocyte-Derived Macrophage Response to Mycobacterium avium Subspecies Paratuberculosis Infection Using RNA-seq

Casey, Maura E., Meade, Kieran G., Nalpas, Nicolas C., Taraktsoglou, Maria, Browne, John A., Killick, Kate E., Park, Stephen D. E., Gormley, Eamonn, Hokamp, Karsten, Magee, David A., MacHugh, David E.

Journal:

Frontiers in Immunology

Year:

2015

Language:

english

File:

PDF, 2.36 MB

english, 2015

59

Compensatory Evolution of Gene Regulation in Response to Stress by Escherichia coli Lacking RpoS

Stoebel, Daniel M., Hokamp, Karsten, Last, Michael S., Dorman, Charles J., Guttman, David S.

Journal:

Year:

2009

Language:

english

File:

PDF, 259 KB

english, 2009

60

Telomeric ORFs (TLOs) in Candida spp. Encode Mediator Subunits That Regulate Distinct Virulence Traits

Haran, John, Boyle, Hannah, Hokamp, Karsten, Yeomans, Tim, Liu, Zhongle, Church, Michael, Fleming, Alastair B., Anderson, Matthew Z., Berman, Judith, Myers, Lawrence C., Sullivan, Derek J., Moran, Gar

Journal:

Year:

2014

Language:

english

File:

PDF, 1.62 MB

english, 2014

61

Key Hub and Bottleneck Genes Differentiate the Macrophage Response to Virulent and Attenuated Mycobacterium bovis

Killick, Kate E., Magee, David A., Park, Stephen D. E., Taraktsoglou, Maria, Browne, John A., Conlon, Kevin M., Nalpas, Nicolas C., Gormley, Eamonn, Gordon, Stephen V., MacHugh, David E., Hokamp, Kars

Journal:

Frontiers in Immunology

Year:

2014

Language:

english

File:

PDF, 3.31 MB

english, 2014

62

RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis

McLoughlin, Kirsten E., Nalpas, Nicolas C., Rue-Albrecht, KÃ©vin, Browne, John A., Magee, David A., Killick, Kate E., Park, Stephen D. E., Hokamp, Karsten, Meade, Kieran G., Oâ€™Farrelly, Cliona, Gorm

Journal:

Frontiers in Immunology

Year:

2014

Language:

english

File:

PDF, 1.60 MB

english, 2014

63

Wrapping up BLAST and other applications for use on Unix clusters

Hokamp, K., Shields, D. C., Wolfe, K. H., Caffrey, D. R.

Journal:

Year:

2003

Language:

english

File:

PDF, 1.22 MB

english, 2003

64

[ACM Press the 9th International Conference - Graz, Austria (2013.09.04-2013.09.06)] Proceedings of the 9th International Conference on Semantic Systems - I-SEMANTICS '13 - Improving efficiency and accuracy in multilingual entity extraction

Daiber, Joachim, Jakob, Max, Hokamp, Chris, Mendes, Pablo N.

Year:

2013

Language:

english

File:

PDF, 412 KB

english, 2013

65

Complete Genome Sequence of Salmonella enterica Serovar Agona Pulsed-Field Type SAGOXB.0066, Cause of a 2008 Pan-European Outbreak

McCusker, M. P., Hokamp, K., Buckley, J. F., Wall, P. G., Martins, M., Fanning, S.

Journal:

Genome Announcements

Year:

2014

Language:

english

File:

PDF, 136 KB

english, 2014

66

Computertomographischer Nachweis eines beidseitigen Aderhautosteoms

Tschakert, H., Große-Hokamp, H.

Journal:

RöFo - Fortschritte auf dem Gebiet der R

Year:

1985

Language:

german

File:

PDF, 973 KB

german, 1985

67

ArrayPipe: a flexible processing pipeline for microarray data

Hokamp, K., Roche, F. M., Acab, M., Rousseau, M.-E., Kuo, B., Goode, D., Aeschliman, D., Bryan, J., Babiuk, L. A., Hancock, R. E. W., Brinkman, F. S. L.

Journal:

Nucleic Acids Research

Year:

2004

Language:

english

File:

PDF, 54 KB

english, 2004

68

PubCrawler: keeping up comfortably with PubMed and GenBank

Hokamp, K., Wolfe, K. H.

Journal:

Nucleic Acids Research

Year:

2004

Language:

english

File:

PDF, 474 KB

english, 2004

69

ProbeLynx: a tool for updating the association of microarray probes to genes

Roche, F. M., Hokamp, K., Acab, M., Babiuk, L. A., Hancock, R. E. W., Brinkman, F. S. L.

Journal:

Nucleic Acids Research

Year:

2004

Language:

english

File:

PDF, 59 KB

english, 2004

70

Delineating transcriptional networks of prognostic gene signatures refines treatment recommendations for lymph node-negative breast cancer patients

Lanigan, Fiona, Brien, Gerard L., Fan, Yue, Madden, Stephen F., Jerman, Emilia, Maratha, Ashwini, Aloraifi, Fatima, Hokamp, Karsten, Dunne, Eiseart J., Lohan, Amanda J., Flanagan, Louise, Garbe, James

Journal:

Year:

2015

Language:

english

File:

PDF, 2.93 MB

english, 2015

71

Computertomographische Beobachtung einer Mikrolithiasis alveolaris pulmonum

Schulte, G., Tschakert, H., Große-Hokamp, H., Braun, U.

Journal:

RöFo - Fortschritte auf dem Gebiet der R

Year:

1985

Language:

german

File:

PDF, 835 KB

german, 1985

72

Ethyl Lithiodiazoacetate: Extremely Unstable Intermediate Handled Efficiently in Flow

Müller, Simon T. R., Hokamp, Tobias, Ehrmann, Svenja, Hellier, Paul, Wirth, Thomas

Journal:

Chemistry - A European Journal

Year:

2016

Language:

english

File:

PDF, 853 KB

english, 2016

73

Renal biomarkers in domestic species

Hokamp, Jessica A., Nabity, Mary B.

Journal:

Veterinary Clinical Pathology

Year:

2016

Language:

english

File:

PDF, 204 KB

english, 2016

74

Correlation of Urine and Serum Biomarkers with Renal Damage and Survival in Dogs with Naturally Occurring Proteinuric Chronic Kidney Disease

Hokamp, J.A., Cianciolo, R.E., Boggess, M., Lees, G.E., Benali, S.L., Kovarsky, M., Nabity, M.B.

Journal:

Journal of Veterinary Internal Medicine

Year:

2016

Language:

english

File:

PDF, 3.54 MB

english, 2016

75

microRNA regulatory circuits in a mouse model of inherited retinal degeneration

Palfi, Arpad, Hokamp, Karsten, Hauck, Stefanie M., Vencken, Sebastian, Millington-Ward, Sophia, Chadderton, Naomi, Carrigan, Mathew, Kortvely, Elod, Greene, Catherine M., Kenna, Paul F., Farrar, G. Ja

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 3.78 MB

english, 2016

76

Cytologic Diagnosis of Disseminated Histoplasmosis in the Wall of the Urinary Bladder of a Cat

Taylor, Amanda R., Barr, James W., Hokamp, Jessica A., Johnson, Mark C., Young, Benjamin D.

Journal:

Journal of the American Animal Hospital Association

Year:

2012

Language:

english

File:

PDF, 819 KB

english, 2012

77

Gene expression changes during retinal development and rod specification.

Mansergh, Fiona C, Carrigan, Matthew, Hokamp, Karsten, Farrar, G Jane

Journal:

Molecular vision

Year:

2015

Language:

english

File:

PDF, 1.28 MB

english, 2015

78

Re-engineering cellular physiology by rewiring high-level global regulatory genes

Fitzgerald, Stephen, Dillon, Shane C., Chao, Tzu-Chiao, Wiencko, Heather L., Hokamp, Karsten, Cameron, Andrew D. S., Dorman, Charles J.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 792 KB

english, 2016

79

Improvement of Image Quality in Unenhanced Dual-Layer CT of the Head Using Virtual Monoenergetic Images Compared With Polyenergetic Single-Energy CT

Neuhaus, Victor, Abdullayev, Nuran, Große Hokamp, Nils, Pahn, Gregor, Kabbasch, Christoph, Mpotsaris, Anastasios, Maintz, David, Borggrefe, Jan

Journal:

Investigative Radiology

Year:

2017

Language:

english

File:

PDF, 849 KB

english, 2017

80

Solitary PSMA-Positive Pulmonary Metastasis in Biochemical Relapse of Prostate Cancer

Groe Hokamp, Nils, Kobe, Carsten, Linzenich, Eric, Maintz, David, Drzezga, Alexander

Journal:

Clinical Nuclear Medicine

Year:

2017

Language:

english

File:

PDF, 224 KB

english, 2017

81

ChemInform Abstract: Ethyl Lithiodiazoacetate: Extremely Unstable Intermediate Handled Efficiently in Flow.

Mueller, Simon T. R., Hokamp, Tobias, Ehrmann, Svenja, Hellier, Paul, Wirth, Thomas

Journal:

Year:

2016

File:

PDF, 22 KB

2016

82

Image quality evaluation of dual-layer spectral detector CT of the chest and comparison with conventional CT imaging

Doerner, Jonas, Hauger, Myriam, Hickethier, Tilman, Byrtus, Jonathan, Wybranski, Christian, Hokamp, Nils Große, Maintz, David, Haneder, Stefan

Journal:

European Journal of Radiology

Year:

2017

Language:

english

File:

PDF, 864 KB

english, 2017

83

Radical Hydrodehalogenation of Aryl Bromides and Chlorides with Sodium Hydride and 1,4-Dioxane

Hokamp, Tobias, Dewanji, Abhishek, Lübbesmeyer, Maximilian, Mück-Lichtenfeld, Christian, Würthwein, Ernst-Ulrich, Studer, Armido

Journal:

Angewandte Chemie International Edition

Year:

2017

Language:

english

File:

PDF, 956 KB

english, 2017

84

Radical Hydrodehalogenation of Aryl Bromides and Chlorides with Sodium Hydride and 1,4-Dioxane

Hokamp, Tobias, Dewanji, Abhishek, Lübbesmeyer, Maximilian, Mück-Lichtenfeld, Christian, Würthwein, Ernst-Ulrich, Studer, Armido

Journal:

Angewandte Chemie

Year:

2017

Language:

english

File:

PDF, 957 KB

english, 2017

85

Reduction of artifacts caused by orthopedic hardware in the spine in spectral detector CT examinations using virtual monoenergetic image reconstructions and metal-artifact-reduction algorithms

Große Hokamp, Nils, Neuhaus, V., Abdullayev, N., Laukamp, K., Lennartz, S., Mpotsaris, A., Borggrefe, J.

Journal:

Skeletal Radiology

Year:

2017

Language:

english

File:

PDF, 674 KB

english, 2017

86

Comparing different thrombectomy techniques in five large-volume centers: a ‘real world’ observational study

Hesse, Amélie Carolina, Behme, Daniel, Kemmling, André, Zapf, Antonia, Hokamp, Nils Große, Frischmuth, Isabelle, Maier, Ilko, Liman, Jan, Tsogkas, Ioannis, Buhk, Jan-Hendrik, Tran, Julia, Fiehler, Jen

Journal:

Journal of NeuroInterventional Surgery

Year:

2017

Language:

english

File:

PDF, 313 KB

english, 2017

87

Comparison of virtual monoenergetic and polyenergetic images reconstructed from dual-layer detector CT angiography of the head and neck

Neuhaus, Victor, Große Hokamp, Nils, Abdullayev, Nuran, Maus, Volker, Kabbasch, Christoph, Mpotsaris, Anastasios, Maintz, David, Borggrefe, Jan

Journal:

European Radiology

Year:

2017

Language:

english

File:

PDF, 1.52 MB

english, 2017

88

Iodine Monoacetate for Efficient Oxyiodinations of Alkenes and Alkynes

Hokamp, Tobias, Storm, Alena, Yusubov, Mekhman, Wirth, Thomas

Journal:

Year:

2017

Language:

english

File:

PDF, 160 KB

english, 2017

89

Effects of Contrast Enhancement on in-Body Calibrated Phantom-Less Bone Mineral Density Measurements in Computed Tomography

Abdullayev, Nuran, Neuhaus, Victor-Frederic, Bratke, Grischa, Voss, Sebastian, Hokamp, Nils Grosse, Hellmich, Martin, Krug, Barbara, Maintz, David, Borggrefe, Jan

Journal:

Journal of Clinical Densitometry

Year:

2017

Language:

english

File:

PDF, 1.14 MB

english, 2017

90

The Candida albicans TOR-Activating GTPases Gtr1 and Rhb1 Coregulate Starvation Responses and Biofilm Formation

Flanagan, Peter R., Liu, Ning-Ning, Fitzpatrick, Darren J., Hokamp, Karsten, Köhler, Julia R., Moran, Gary P., Lorenz, Michael

Journal:

Year:

2017

Language:

english

File:

PDF, 1.86 MB

english, 2017

91

Dysregulated mitogen-activated protein kinase signalling as an oncogenic basis for clear cell sarcoma of the kidney

Kenny, Colin, McDonagh, Naomi, Lazaro, Antonio, O'Meara, Elaine, Klinger, Rut, O'Connor, Darran, Roche, Fiona, Hokamp, Karsten, O'Sullivan, Maureen J.

Journal:

The Journal of Pathology

Year:

2017

Language:

english

File:

PDF, 1.53 MB

english, 2017

92

CD10−/ALDH− cells are the sole cisplatin-resistant component of a novel ovarian cancer stem cell hierarchy

Ffrench, Brendan, Gasch, Claudia, Hokamp, Karsten, Spillane, Cathy, Blackshields, Gordon, Mahgoub, Thamir Mahmoud, Bates, Mark, Kehoe, Louise, Mooney, Aoibhinn, Doyle, Ronan, Doyle, Brendan, O'Donnell

Journal:

Cell Death and Disease

Year:

2017

Language:

english

File:

PDF, 5.62 MB

english, 2017

93

Improved depiction of atherosclerotic carotid artery stenosis in virtual monoenergetic reconstructions of venous phase Dual-Layer Computed Tomography in comparison to polyenergetic reconstructions

Zopfs, David, Lennartz, Simon, Laukamp, Kai, Große Hokamp, Nils, Mpotsaris, Anastasios, Maintz, David, Borggrefe, Jan, Neuhaus, Victor

Journal:

European Journal of Radiology

Year:

2018

Language:

english

File:

PDF, 555 KB

english, 2018

94

RNA-seq of serial kidney biopsies obtained during progression of chronic kidney disease from dogs with X-linked hereditary nephropathy

Chu, Candice P., Hokamp, Jessica A., Cianciolo, Rachel E., Dabney, Alan R., Brinkmeyer-Langford, Candice, Lees, George E., Nabity, Mary B.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.10 MB

english, 2017

95

Role of a single noncoding nucleotide in the evolution of an epidemic African clade of Salmonella

Hammarlöf, Disa L., Kröger, Carsten, Owen, Siân V., Canals, Rocío, Lacharme-Lora, Lizeth, Wenner, Nicolas, Schager, Anna E., Wells, Timothy J., Henderson, Ian R., Wigley, Paul, Hokamp, Karsten, Feasey

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.68 MB

english, 2018

96

Thoracic-abdominal imaging with a novel dual-layer spectral detector CT: intra-individual comparison of image quality and radiation dose with 128-row single-energy acquisition

Haneder, Stefan, Siedek, Florian, Doerner, Jonas, Pahn, Gregor, Grosse Hokamp, Nils, Maintz, David, Wybranski, Christian

Journal:

Acta Radiologica

Year:

2018

Language:

english

File:

PDF, 459 KB

english, 2018

97

Low-Dose Characterization of Kidney Stones Using Spectral Detector Computed Tomography

Große Hokamp, Nils, Salem, Johannes, Hesse, Albrecht, Holz, Jasmin Alexandra, Ritter, Manuel, Heidenreich, Axel, Maintz, David, Haneder, Stefan

Journal:

Investigative Radiology

Year:

2018

Language:

english

File:

PDF, 246 KB

english, 2018

98

Reduction of Artifacts Caused by Deep Brain Stimulating Electrodes in Cranial Computed Tomography Imaging by Means of Virtual Monoenergetic Images, Metal Artifact Reduction Algorithms, and Their Combination

Große Hokamp, Nils, Hellerbach, Alexandra, Gierich, Andreas, Jordan, David W., Visser-Vandewalle, Veerle, Maintz, David, Haneder, Stefan

Journal:

Investigative Radiology

Year:

2018

Language:

english

File:

PDF, 435 KB

english, 2018

99

CT metal artifacts in patients with total hip replacements: for artifact reduction monoenergetic reconstructions and post-processing algorithms are both efficient but not similar

Laukamp, Kai Roman, Lennartz, Simon, Neuhaus, Victor-Frederic, Große Hokamp, Nils, Rau, Robert, Le Blanc, Markus, Abudullayev, Nuran, Mpotaris, Anastasios, Maintz, David, Borggrefe, Jan

Journal:

European Radiology

Year:

2018

Language:

english

File:

PDF, 3.79 MB

english, 2018

100

Serum α 1 -proteinase inhibitor concentrations in dogs with exocrine pancreatic disease, chronic hepatitis or proteinuric chronic kidney disease

Heilmann, R.M., Grützner, N., Hokamp, J.A., Lidbury, J.A., Xenoulis, P.G., Suchodolski, J.S., Nabity, M.B., Cianciolo, R., Steiner, J.M.

Journal:

The Veterinary Journal

Year:

2018

Language:

english

File:

PDF, 457 KB

english, 2018