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51

Identifyingcis- andtrans-acting single-nucleotide polymorphisms controlling lymphocyte gene expression in humans

Pingzhao Hu,Hui Lan,Wei Xu,Joseph Beyene,Celia MT Greenwood

Journal:

BMC Proceedings

Year:

2007

Language:

english

File:

PDF, 201 KB

english, 2007

52

Genome-Wide Analysis Identifies Rare Copy Number Variations Associated with Inflammatory Bowel Disease

Frenkel, Svetlana, Sargent, Michael, Kuang, Qin, Wei, John, Thiruvahindrapuram, Bhooma, Spriggs, Elizabeth ., Scherer, Stephen W., Bernstein, Charles N., Hu, Pingzhao

Journal:

Gastroenterology

Year:

2017

Language:

english

File:

PDF, 348 KB

english, 2017

53

Chlamydial Protease-Like Activity Factor and Type III Secreted Effectors Cooperate in Inhibition of p65 Nuclear Translocation

Patton, Michael John, McCorrister, Stuart, Grant, Chris, Westmacott, Garrett, Fariss, Robert, Hu, Pingzhao, Zhao, Kaiqiong, Blake, Mary, Whitmire, Bill, Yang, Chunfu, Caldwell, Harlan D., McClarty, Gr

Journal:

Year:

2016

Language:

english

File:

PDF, 2.81 MB

english, 2016

54

Protein complexes, big data, machine learning and integrative proteomics: lessons learned over a decade of systematic analysis of protein interaction networks

Havugimana, Pierre C., Hu, Pingzhao, Emili, Andrew

Journal:

Expert Review of Proteomics

Year:

2017

Language:

english

File:

PDF, 1.34 MB

english, 2017

55

Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity—a pilot study

Cheng, Yan, Monteiro, Cátia, Matos, Andreia, You, Jiaying, Fraga, Avelino, Pereira, Carina, Catalán, Victoria, Rodríguez, Amaia, Gómez-Ambrosi, Javier, Frühbeck, Gema, Ribeiro, Ricardo, Hu, Pingzhao

Journal:

Clinical Epigenetics

Year:

2018

Language:

english

File:

PDF, 4.72 MB

english, 2018

56

Sex, age and generation effects on genome-wide linkage analysis of gene expression in transformed lymphoblasts

Rangrej, Jagadish, Beyene, Joseph, Hu, Pingzhao, Paterson, Andrew D

Journal:

BMC Proceedings

Year:

2007

Language:

english

File:

PDF, 784 KB

english, 2007

57

Impact of normalization and filtering on linkage analysis of gene expression data

Beyene, Joseph, Hu, Pingzhao, Parkhomenko, Elena, Tritchler, David

Journal:

BMC Proceedings

Year:

2007

Language:

english

File:

PDF, 202 KB

english, 2007

58

Evidence of linkage to chromosome 1 for early age of onset of rheumatoid arthritis and HLA marker DRB1 genotype in NARAC data

Xu, Wei, Lan, Hui, Hu, Pingzhao, Bull, Shelley B, Greenwood, Celia MT

Journal:

BMC Proceedings

Year:

2007

Language:

english

File:

PDF, 232 KB

english, 2007

59

Gene Expression Changes Associated with Resistance to Intravenous Corticosteroid Therapy in Children with Severe Ulcerative Colitis

Kabakchiev, Boyko, Turner, Dan, Hyams, Jeffrey, Mack, David, Leleiko, Neal, Crandall, Wallace, Markowitz, James, Otley, Anthony R., Xu, Wei, Hu, Pingzhao, Griffiths, Anne M., Silverberg, Mark S., Dalm

Journal:

Year:

2010

Language:

english

File:

PDF, 822 KB

english, 2010

60

Microarray Meta-Analysis Identifies Acute Lung Injury Biomarkers in Donor Lungs That Predict Development of Primary Graft Failure in Recipients

Hu, Pingzhao, Wang, Xinchen, Haitsma, Jack J., Furmli, Suleiman, Masoom, Hussain, Liu, Mingyao, Imai, Yumiko, Slutsky, Arthur S., Beyene, Joseph, Greenwood, Celia M. T., dos Santos, Claudia, Xu, Ying

Journal:

Year:

2012

Language:

english

File:

PDF, 1.10 MB

english, 2012

61

A Novel Graph-based Algorithm to Infer Recurrent Copy Number Variations in Cancer

Chi, Chen, Ajwad, Rasif, Kuang, Qin, Hu, Pingzhao

Journal:

Cancer Informatics

Year:

2016

Language:

english

File:

PDF, 2.53 MB

english, 2016

62

Microarray Meta-Analysis and Cross-Platform Normalization: Integrative Genomics for Robust Biomarker Discovery

Walsh, Christopher, Hu, Pingzhao, Batt, Jane, Santos, Claudia

Journal:

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

63

An integrative network-based approach to identify novel disease genes and pathways: a case study in the context of inflammatory bowel disease

Eguchi, Ryohei, Karim, Mohammand Bozlul, Hu, Pingzhao, Sato, Tetsuo, Ono, Naoaki, Kanaya, Shigehiko, Altaf-Ul-Amin, Md.

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.34 MB

english, 2018

64

Association Analysis of Somatic Copy Number Alteration Burden With Breast Cancer Survival

Zhang, Linfan, Feizi, Nikta, Chi, Chen, Hu, Pingzhao

Journal:

Frontiers in Genetics

Year:

2018

Language:

english

File:

PDF, 4.51 MB

english, 2018

65

A deep neural network based regression model for triglyceride concentrations prediction using epigenome-wide DNA methylation profiles

Islam, Md. Mohaiminul, Tian, Ye, Cheng, Yan, Wang, Yang, Hu, Pingzhao

Journal:

BMC Proceedings

Year:

2018

Language:

english

File:

PDF, 858 KB

english, 2018

66

Long Non-Coding RNA H19 Acts as an Estrogen Receptor Modulator that is Required for Endocrine Therapy Resistance in ER+ Breast Cancer Cells

Basak, Pratima, Chatterjee, Sumanta, Bhat, Vasudeva, Su, Alice, Jin, Hyerang, Lee-Wing, Victoria, Liu, Qian, Hu, Pingzhao, Murphy, Leigh C, Raouf, Afshin

Journal:

Cellular Physiology and Biochemistry

Year:

2018

Language:

english

File:

PDF, 2.06 MB

english, 2018

67

Recurrent copy number alterations in young women with breast cancer

Chi, Chen, Murphy, Leigh C., Hu, Pingzhao

Journal:

Year:

2018

Language:

english

File:

PDF, 4.34 MB

english, 2018

68

Computational drug repurposing for inflammatory bowel disease using genetic information

Grenier, Liam, Hu, Pingzhao

Journal:

Computational and Structural Biotechnology Journal

Year:

2019

Language:

english

File:

PDF, 434 KB

english, 2019

69

Chromatin organization of transcribed genes in chicken polychromatic erythrocytes

Jahan, Sanzida, Beacon, Tasnim H., He, Shihua, Gonzalez, Carolina, Xu, Wayne, Delcuve, Geneviève P., Jia, Shuo, Hu, Pingzhao, Davie, James R.

Journal:

Year:

2019

Language:

english

File:

PDF, 6.42 MB

english, 2019

70

Predicting drug-target interaction network using deep learning model

You, Jiaying, McLeod, Robert D., Hu, Pingzhao

Journal:

Computational Biology and Chemistry

Year:

2019

File:

PDF, 780 KB

2019

71

An OpenMP-based tool for finding longest common subsequence in bioinformatics

Shikder, Rayhan, Thulasiraman, Parimala, Irani, Pourang, Hu, Pingzhao

Journal:

BMC Research Notes

Year:

2019

Language:

english

File:

PDF, 1.04 MB

english, 2019

72

Association Analysis of Deep Genomic Features Extracted by Denoising Autoencoders in Breast Cancer

Liu, Qian, Hu, Pingzhao

Journal:

Year:

2019

File:

PDF, 1.97 MB

2019

73

An OpenMP-based tool for finding longest common subsequence in bioinformatics

Shikder, Rayhan, Thulasiraman, Parimala, Irani, Pourang, Hu, Pingzhao

Journal:

BMC Research Notes

Year:

2019

File:

PDF, 1.04 MB

2019

74

[ACM Press the 2019 11th International Conference - Zhuhai, China (2019.02.22-2019.02.24)] Proceedings of the 2019 11th International Conference on Machine Learning and Computing - ICMLC '19 - Predicting Drug-Drug Interactions Using Deep Neural Network

Hou, Xinyu, You, Jiaying, Hu, Pingzhao

Year:

2019

Language:

english

File:

PDF, 560 KB

english, 2019

75

[ACM Press the 2019 11th International Conference - Zhuhai, China (2019.02.22-2019.02.24)] Proceedings of the 2019 11th International Conference on Machine Learning and Computing - ICMLC '19 - Predicting Drug-Drug Interactions Using Deep Neural Network

Hou, Xinyu, You, Jiaying, Hu, Pingzhao

Year:

2019

File:

PDF, 560 KB

2019

76

[IEEE 2019 IEEE 7th International Conference on Bioinformatics and Computational Biology ( ICBCB) - Hangzhou, China (2019.3.21-2019.3.23)] 2019 IEEE 7th International Conference on Bioinformatics and Computational Biology ( ICBCB) - A Novel Convolutional Regression Network for Cell Counting

Liu, Qian, Junker, Anna, Murakami, Kazuhiro, Hu, Pingzhao

Year:

2019

Language:

english

File:

PDF, 3.94 MB

english, 2019

77

Epigenetic Profiling in Severe Sepsis

Binnie, Alexandra, Walsh, Christopher J., Hu, Pingzhao, Dwivedi, Dhruva J., Fox-Robichaud, Alison, Liaw, Patricia C., Tsang, Jennifer L. Y., Batt, Jane, Carrasqueiro, Gabriela, Gupta, Sahil, Marshall,

Journal:

Critical Care Medicine

Year:

2019

File:

PDF, 1.84 MB

2019

78

Discovery of inflammatory bowel disease-associated miRNAs using a novel bipartite clustering approach

Altaf-Ul-Amin, Md., Karim, Mohammad Bozlul, Hu, Pingzhao, ONO, Naoaki, Kanaya, Shigehiko

Journal:

BMC Medical Genomics

Year:

2020

Language:

english

File:

PDF, 2.50 MB

english, 2020

79

Deep graph embedding for prioritizing synergistic anticancer drug combinations

Jiang, Peiran, Huang, Shujun, Fu, Zhenyuan, Sun, Zexuan, Lakowski, Ted M., Hu, Pingzhao

Journal:

Computational and Structural Biotechnology Journal

Year:

2020

File:

PDF, 2.66 MB

2020

80

Tumor-Infiltrating CD8 T Cells Predict Clinical Breast Cancer Outcomes in Young Women

Jin, Yong Won, Hu, Pingzhao

Journal:

Year:

2020

File:

PDF, 2.57 MB

2020

81

Mesenchymal stromal/stem cells modulate response to experimental sepsis-induced lung injury via regulation of miR-27a-5p in recipient mice

Younes, Nadim, Zhou, Louis, Amatullah, Hajera, Mei, Shirley H J, Herrero, Raquel, Lorente, Jose Angel, Stewart, Duncan J, Marsden, Philip, Liles, W Conrad W, Hu, Pingzhao, dos Santos, Claudia C

Journal:

Year:

2020

File:

PDF, 1.77 MB

2020

82

PI3K activation is enhanced by FOXM1D binding to p110 and p85 subunits

Wang, Qi, Zhang, Pingzhao, Zhang, Wei, Zhang, Xin, Chen, Jianfeng, Ding, Peipei, Li, Luying, Lv, Xinyue, Li, Ling, Hu, Weiguo

Journal:

Signal Transduction and Targeted Therapy

Year:

2020

File:

PDF, 1.32 MB

2020

83

An integrative deep learning framework for classifying molecular subtypes of breast cancer

Mohaiminul Islam, Md., Huang, Shujun, Ajwad, Rasif, Chi, Chen, Wang, Yang, Hu, Pingzhao

Journal:

Computational and Structural Biotechnology Journal

Year:

2020

File:

PDF, 3.41 MB

2020

84

Dynamics of the cell-free DNA methylome of metastatic prostate cancer during androgen-targeting treatment

Peter, Madonna R, Bilenky, Misha, Isserlin, Ruth, Bader, Gary D, Shen, Shu Yi, De Carvalho, Daniel D, Hansen, Aaron R, Hu, Pingzhao, Fleshner, Neil E, Joshua, Anthony M, Hirst, Martin, Bapat, Bharati

Journal:

Year:

2020

File:

PDF, 2.85 MB

2020

85

Integrative Data Augmentation with U-Net Segmentation Masks Improves Detection of Lymph Node Metastases in Breast Cancer Patients

Jin, Yong Won, Jia, Shuo, Ashraf, Ahmed Bilal, Hu, Pingzhao

Journal:

Year:

2020

File:

PDF, 1.89 MB

2020

86

Incidence, Characteristics, and Outcomes of Interval Breast Cancers Compared With Screening-Detected Breast Cancers

Niraula, Saroj, Biswanger, Natalie, Hu, PingZhao, Lambert, Pascal, Decker, Kathleen

Journal:

JAMA Network Open

Year:

2020

File:

PDF, 570 KB

2020

87

[American Thoracic Society American Thoracic Society 2012 International Conference, May 18-23, 2012 â¢ San Francisco, California - ()] A94. THE NEW BIOLOGY OF SEPSIS - Network Analysis Of Transcriptional Responses Induced By Systemic Administration Of Bone Marrow Derived Mesenchymal Cells In Polymicrobial Sepsis

Dos Santos, Claudia C., Murthy, Srinivas, Hu, Pingzhao, Shan, Yuexin, Haitsma, Jack, Mei, Shirley H.J., Stewart, Duncan J., Liles, Conrad

Year:

2012

File:

PDF, 18 KB

2012

88

A Two-Dimensional Sparse Matrix Profile DenseNet for COVID-19 Diagnosis Using Chest CT Images

Liu, Qian, Leung, Carson K., Hu, Pingzhao

Journal:

Year:

2020

File:

PDF, 1.91 MB

2020