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1

Towards Unifying Systems Biology - Using Pathway Data in Biopax Format for SBML Simulators

Ruebenacker, Oliver, Moraru, Ion I., Blinov, Michael L.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 34 KB

english, 2009

2

NMRbox: A Resource for Biomolecular NMR Computation

Maciejewski, Mark W., Schuyler, Adam D., Gryk, Michael R., Moraru, Ion I., Romero, Pedro R., Ulrich, Eldon L., Eghbalnia, Hamid R., Livny, Miron, Delaglio, Frank, Hoch, Jeffrey C.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 577 KB

english, 2017

3

[IEEE 2019 International Conference on Electromechanical and Energy Systems (SIELMEN) - Craiova, Romania (2019.10.9-2019.10.11)] 2019 International Conference on Electromechanical and Energy Systems (SIELMEN) - The Method for Synthesis the PI and PID Algorithms to the Model of Object with Inertia Second Order

Izvoreanu, Bartolomeu, Cojuhari, Irina, Fiodorov, Ion, Moraru, Dumitru, Potlog, Mihail

Year:

2019

Language:

english

File:

PDF, 244 KB

english, 2019

4

Virtual NEURON: a strategy for merged biochemical and electrophysiological modeling

Sherry-Ann Brown, Ion I. Moraru, James C. Schaff, Leslie M. Loew

Journal:

Journal of Computational Neuroscience

Year:

2011

Language:

english

File:

PDF, 593 KB

english, 2011

5

An Antibody to Annexin V Blocks Ca2+-Dependent ATPase Activity of Sarcoplasmic Reticulum in Human Failing Hearts

ION I. MORARU, SERGEI SYRBU, NADA ZECEVIC, DAVID W. HAGER, JAMES WATRAS, FRANK MESSINEO

Journal:

Annals of the New York Academy of Sciences

Year:

1998

File:

PDF, 822 KB

1998

6

Pressure Overload Induces Overexpression of Annexins II and V in Aortic-Banded Rats

Ion I. Moraru, Sergei Syrbu, Katerina Michaels, Do Han Kim, Diana Malchoff, James Watrasb

Journal:

Annals of the New York Academy of Sciences

Year:

1998

File:

PDF, 290 KB

1998

7

The Virtual Cell : An Integrated Modeling Environment for Experimental and Computational Cell Biology

ION I. MORARU, JAMES C. SCHAFF, BORIS M. SLEPCHENKO, LESLIE M. LOEW

Journal:

Annals of the New York Academy of Sciences

Year:

2002

File:

PDF, 48 KB

2002

8

Topology of the Mitochondrial Inner Membrane: Dynamics and Bioenergetic Implications

Carmen A. Mannella, Douglas R. Pfeiffer, Patrick C. Bradshaw, Ion I. Moraru, Boris Slepchenko, Leslie M. Loew, Chyong-ere Hsieh, Karolyn Buttle, Michael Marko

Journal:

Year:

2001

Language:

english

File:

PDF, 768 KB

english, 2001

9

A wave of IP3 production accompanies the fertilization Ca2+ wave in the egg of the frog, Xenopus laevis: theoretical and experimental support

John Wagner, Christopher P Fall, Feng Hong, Christopher E Sims, Nancy L Allbritton, Ray A Fontanilla, Ion I Moraru, Leslie M Loew, Richard Nuccitelli

Journal:

Year:

2004

Language:

english

File:

PDF, 401 KB

english, 2004

10

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language

Dagmar Waltemath, Richard Adams, Frank T Bergmann, Michael Hucka, Fedor Kolpakov, Andrew K Miller, Ion I Moraru, David Nickerson, Sven Sahle, Jacky L Snoep, Nicolas Le Novère

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 927 KB

english, 2011

11

Phospholipase C contracts visceral smooth muscle

Laurenziu M Popescu, Mihai Popescu, Ion I Moraru

Journal:

European Journal of Pharmacology

Year:

1986

Language:

english

File:

PDF, 237 KB

english, 1986

12

Antibodies against phospholipase C inhibit smooth muscle contraction induced by acetylcholine and histamine

Ion I. Moraru, Laurentziu M. Popescu, Cristina Vidulescu, Cezar Tzigaret

Journal:

European Journal of Pharmacology

Year:

1987

Language:

english

File:

PDF, 378 KB

english, 1987

13

Cell Shape and Negative Links in Regulatory Motifs Together Control Spatial Information Flow in Signaling Networks

Susana R. Neves, Panayiotis Tsokas, Anamika Sarkar, Elizabeth A. Grace, Padmini Rangamani, Stephen M. Taubenfeld, Cristina M. Alberini, James C. Schaff, Robert D. Blitzer, Ion I. Moraru, Ravi Iyengar

Journal:

Year:

2008

Language:

english

File:

PDF, 2.68 MB

english, 2008

14

Gene expression on acute myocardial stress. Induction by hypoxia, ischemia, reperfusion, hyperthermia and oxidative stress

Dipak K. Das, Nilanjana Maulik, Ion I. Moraru

Journal:

Journal of Molecular and Cellular Cardiology

Year:

1995

Language:

english

File:

PDF, 1.73 MB

english, 1995

15

An Image-Based Model of Calcium Waves in Differentiated Neuroblastoma Cells

Fink, Charles C., Slepchenko, Boris, Moraru, Ion I., Watras, James, Schaff, James C., Loew, Leslie M.

Journal:

Biophysical Journal

Year:

2000

Language:

english

File:

PDF, 2.75 MB

english, 2000

16

The action of ultraviolet radiations on the antagonic system staphylococcus 31A — Bacillus megaterium 207

Ion Moraru, Stefan Antohi

Journal:

Biochemical and Biophysical Research Communications

Year:

1966

Language:

english

File:

PDF, 399 KB

english, 1966

17

Comparative studies concerning the effect of alkylating agents and of inhibitors of protein synthesis on the antagonic system Staphylococcus 31A — Bacillus megaterium 207

Ion Moraru, Stefan Antohi, Marius Scarlatescu

Journal:

Biochemical and Biophysical Research Communications

Year:

1966

Language:

english

File:

PDF, 369 KB

english, 1966

18

The Fc receptor for IgA expression and affinity on lymphocytes and macrophages

Gabriela Moţa, Ion Moraru Jr., Mariana Nicolae, Ioan Moraru

Journal:

Molecular Immunology

Year:

1988

Language:

english

File:

PDF, 808 KB

english, 1988

19

Virtual FRAP - an Experiment-Oriented Simulation Tool

Schaff, James C., Cowan, Ann E., Loew, Leslie M., Moraru, Ion I.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 38 KB

english, 2009

20

Pathway Commons at Virtual Cell: Use of Pathway Data For Mathematical Modeling

Blinov, Michael L., Ruebenacker, Oliver, Schaff, James C., Loew, Leslie M., Moraru, Ion I.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 36 KB

english, 2012

21

Gene Expression during Myocardial Adaptation to Ischemia and Reperfusion

DIPAK K. DAS, ION I. MORARU, NILANJANA MAULIK, RICHARD M. ENGELMAN

Journal:

Annals of the New York Academy of Sciences

Year:

1994

Language:

english

File:

PDF, 880 KB

english, 1994

22

Role of Phospholipase A2, C, and D Activities during Myocardial Ischemia and Reperfusion

ION I. MORARU, LAURENTIU M. POPESUC, XUEKUN LIU, RICHARD M. ENGELMAN, DIPAK K. DAS

Journal:

Annals of the New York Academy of Sciences

Year:

1994

Language:

english

File:

PDF, 258 KB

english, 1994

23

Logic modeling and the ridiculome under the rug

Michael L Blinov, Ion I Moraru

Journal:

Year:

2012

Language:

english

File:

PDF, 302 KB

english, 2012

24

Modeling and Analysis of Calcium Signaling Events Leading to Long-Term Depression in Cerebellar Purkinje Cells

Hernjak, Nicholas, Slepchenko, Boris M., Fernald, Kathleen, Fink, Charles C., Fortin, Dale, Moraru, Ion I., Watras, James, Loew, Leslie M.

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 572 KB

english, 2005

25

Measurement of spin diffusion length in sputtered Ni films using a special exchange-biased spin valve geometry

Moreau, Charles E., Moraru, Ion C., Birge, Norman O., Pratt, William P.

Journal:

Applied Physics Letters

Year:

2007

Language:

english

File:

PDF, 379 KB

english, 2007

26

Variability of Target and Normal Structure Delineation Using Multimodality Imaging for Radiation Therapy of Pancreatic Cancer

Dalah, Entesar, Moraru, Ion, Paulson, Eric, Erickson, Beth, Li, X. Allen

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2014

Language:

english

File:

PDF, 1.30 MB

english, 2014

27

PT339 The Ang 1-7 mediated vascular and coronary reactivity in diabetic endothelial dysfunction

Popovici, Mihail, Lucia, Popovici, Cobet, Valeriu, Todiras, Mihail, Moraru, Ion

Journal:

Year:

2014

Language:

english

File:

PDF, 244 KB

english, 2014

28

System Biology Pathway Exchange - Bridging Pathway Data And Quantitative Models

Ruebenacker, Oliver, Blinov, Michael L., Moraru, Ion I.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 37 KB

english, 2010

29

Phospholipase D signaling in ischemic heart

I. Moraru, Ion, Popescu, Laurenti M., Maulik, Nilanjana, Liu, Xuekun, Das, Dipak K.

Journal:

Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease

Year:

1992

Language:

english

File:

PDF, 668 KB

english, 1992

30

Radiation dose responses for chemoradiation therapy of pancreatic cancer: An analysis of compiled clinical data using biophysical models

Moraru, Ion C., Tai, An, Erickson, Beth, Li, X. Allen

Journal:

Practical Radiation Oncology

Year:

2014

Language:

english

File:

PDF, 737 KB

english, 2014

31

Morphological Control of Inositol-1,4,5-Trisphosphate-Dependent Signals

Charles C. Fink, Boris Slepchenko, Ion I. Moraru, James Schaff, James Watras and Leslie M. Loew

Journal:

The Journal of Cell Biology

Year:

1999

Language:

english

File:

PDF, 2.31 MB

english, 1999

32

Two Inositol 1,4,5-Trisphosphate Binding Sites in Rat Basophilic Leukemia Cells: Relationship between Receptor Occupancy and Calcium Release

Watras, James, Moraru, Ion, Costa, Debra J., Kindman, L. Allen

Journal:

Year:

1994

Language:

english

File:

PDF, 1.15 MB

english, 1994

33

An Endogenous Sulfated Inhibitor of Neuronal Inositol Trisphosphate Receptors †

Watras, James, Orlando, Ron, Moraru, Ion I.

Journal:

Year:

2000

Language:

english

File:

PDF, 104 KB

english, 2000

34

[IEEE 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - Boston, MA, USA (2007.10.14-2007.10.17)] 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering - XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes

Blinov, Michael L., Moraru, Ion I.

Year:

2007

Language:

english

File:

PDF, 1.91 MB

english, 2007

35

Shift in Ferromagnet/Superconductor/Ferromagnet Trilayers with a Strong Ferromagnet

Moraru, Ion C., Pratt, W. P., Birge, Norman O.

Journal:

Physical Review Letters

Year:

2006

Language:

english

File:

PDF, 613 KB

english, 2006

36

Observation of standard spin-switch effects in ferromagnet/superconductor/ferromagnet trilayers with a strong ferromagnet

Moraru, Ion C., Pratt, W. P., Birge, Norman O.

Journal:

Physical Review B

Year:

2006

Language:

english

File:

PDF, 92 KB

english, 2006

37

[IEEE 2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007) - Fremont, CA, USA (2007.11.2-2007.11.4)] 2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007) - Kinetic Modeling Using BioPAX Ontology

Ruebenacker, Oliver, Moraru, Ion I., Schaff, James C., Blinov, Michael L.

Year:

2007

Language:

english

File:

PDF, 443 KB

english, 2007

38

[IEEE 2006 Winter Simulation Conference - Monterey, CA, USA (2006.12.3-2006.12.6)] Proceedings of the 2006 Winter Simulation Conference - Think Simulation - Think Experiment: The Virtual Cell Paradigm

Moraru, Ion, Schaff, James, Loew, Leslie

Year:

2006

Language:

english

File:

PDF, 271 KB

english, 2006

39

Computed Tomography Number Changes Observed During Computed Tomography–Guided Radiation Therapy for Head and Neck Cancer

Feng, Mei, Yang, Cungeng, Chen, Xiaojian, Xu, Shouping, Moraru, Ion, Lang, Jinyi, Schultz, Christopher, Li, X. Allen

Journal:

International Journal of Radiation Oncology*Biology*Physics

Year:

2015

Language:

english

File:

PDF, 626 KB

english, 2015

40

[ACM Press the 1st ACM international conference - Athens, Greece (2008.07.16-2008.07.18)] Proceedings of the 1st ACM international conference on PErvasive Technologies Related to Assistive Environments - PETRA '08 - Newsletter engine application

Moraru, Sorin-Aurel, Bujdei, Catalin, Krupka, Lothar, Truican, Ion, Grigorescu, Costin

Year:

2008

Language:

english

File:

PDF, 369 KB

english, 2008

41

Phosphorylation state-dependent interaction between AKAP7δ/γ and phospholamban increases phospholamban phosphorylation

Rigatti, Marc, Le, Andrew V., Gerber, Claire, Moraru, Ion I., Dodge-Kafka, Kimberly L.

Journal:

Cellular Signalling

Year:

2015

Language:

english

File:

PDF, 1.38 MB

english, 2015

42

[ACM Press the 1st ACM international conference - Athens, Greece (2008.07.16-2008.07.18)] Proceedings of the 1st ACM international conference on PErvasive Technologies Related to Assistive Environments - PETRA '08 - Web 2.0 technologies in web application development

Kristaly, Dominic Mircea, Sisak, Francisc, Truican, Ion, Moraru, Sorin-Aurel, Sandu, Florin

Year:

2008

Language:

english

File:

PDF, 146 KB

english, 2008

43

Langevin Dynamics Simulation of AKAP-PKA Complex: Re-Envisioning the Local Concentration Mechanism for Directing PKA Phosphorylation

Rigatti, Marc, Michalski, Paul J., Dodge-Kafka, Kimberly L., Moraru, Ion I.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 40 KB

english, 2016

44

Using Rules & Pathway Databases to Create Quantitative Mechanistic Models in Virtual Cell

Blinov, Michael L., Vasilescu, Dan, Schaff, James C., Moraru, Ion I., Loew, Leslie M.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 39 KB

english, 2015

45

Rule-Based Modeling and Simulation for Beginners: Intuitive Graphical Interface within Virtual Cell

Blinov, Michael L., Vasilescu, Dan, Moraru, Ion I., Loew, Leslie M., Schaff, James C.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 36 KB

english, 2016

46

Rule-based Modeling with Virtual Cell

Schaff, James C., Vasilescu, Dan, Moraru, Ion I., Loew, Leslie M., Blinov, Michael L.

Journal:

Year:

2016

Language:

english

File:

PDF, 299 KB

english, 2016

47

Phospholipase C is a transmembrane protein. Immunocytochemical evidence.

MORARU, ION I., CIOTARU, LUMINITZA, MANCIULEA, MIOARA, ISAC, MIHAI, TZIGARET, CEZAR, POPESCU, LAURENTZIU M.

Journal:

Acta Histochemica et Cytochemica

Year:

1988

Language:

english

File:

PDF, 2.62 MB

english, 1988

48

Extending Rule-Based Modeling to the Spatial Domain with Virtual Cell (VCELL)

Schaff, James C., Vasilescu, Dan, Moraru, Ion I., Loew, Leslie M., Blinov, Michael L.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 42 KB

english, 2017

49

Compartmental and Spatial Rule-Based Modeling with Virtual Cell

Blinov, Michael L., Schaff, James C., Vasilescu, Dan, Moraru, Ion I., Bloom, Judy E., Loew, Leslie M.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 1.66 MB

english, 2017

50

[IEEE 2017 International Conference on Electromechanical and Power Systems (SIELMEN) - Iasi (2017.10.11-2017.10.13)] 2017 International Conference on Electromechanical and Power Systems (SIELMEN) - Automatic temperature control in 3D printing of the polymer details

Cojuhari, Irina, Fiodorov, Ion, Izvoreanu, Bartolomeu, Moraru, Dumitru, Botnaru, Sorin

Year:

2017

Language:

english

File:

PDF, 522 KB

english, 2017