Ion Măndoiu: search on Z-Library

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51

Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates

Al Seesi, Sahar, Tiagueu, Yvette, Zelikovsky, Alexander, Măndoiu, Ion I

Journal:

Year:

2014

Language:

english

File:

PDF, 1.03 MB

english, 2014

52

Computational Methods for Next Generation Sequencing Data Analysis || Probabilistic Viral Quasispecies Assembly

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 1.18 MB

english, 2016

53

[ACM Press the 2018 ACM International Conference - Washington, DC, USA (2018.08.29-2018.09.01)] Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '18 - ACM-BCB 2018 Computational Advances in Molecular Epidemiology (CAME) Chairs' Welcome

Khudyakov, Yury, Mandoiu, Ion, Skums, Pavel, Zelikovsky, Alexander

Year:

2018

Language:

english

File:

PDF, 595 KB

english, 2018

54

A primal–dual schema based approximation algorithm for the element connectivity problem

Kamal Jain, Ion Măndoiu, Vijay V. Vazirani, David P. Williamson

Journal:

Journal of Algorithms

Year:

2002

Language:

english

File:

PDF, 117 KB

english, 2002

55

Replication-dependent histone genes are actively transcribed in differentiating and aging retinal neurons

Banday, Abdul Rouf, Baumgartner, Marybeth, Al Seesi, Sahar, Karunakaran, Devi Krishna Priya, Venkatesh, Aditya, Congdon, Sean, Lemoine, Christopher, Kilcollins, Ashley M, Mandoiu, Ion, Punzo, Claudio,

Journal:

Year:

2014

Language:

english

File:

PDF, 1.74 MB

english, 2014

56

ILP-based maximum likelihood genome scaffolding

Lindsay, James, Salooti, Hamed, Măndoiu, Ion, Zelikovsky, Alex

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.92 MB

english, 2014

57

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 4983 || A Novel Metric for Redundant Gene Elimination Based on Discriminative Contribution

Măndoiu, Ion, Sunderraman, Raj, Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 353 KB

english, 2008

58

Computational Methods for Next Generation Sequencing Data Analysis || Reconstruction of Infectious Bronchitis Virus Quasispecies from NGS Data

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 420 KB

english, 2016

59

Bioinformatics Algorithms (Techniques and Applications) || Efficient Algorithms for Structural Recall in Databases

Mǎndoiu, Ion I., Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 273 KB

english, 2008

60

On a theorem of gács

Journal:

International Journal of Computer Mathematics

Year:

1993

Language:

english

File:

PDF, 532 KB

english, 1993

61

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 7292 || Novel Multi-sample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles

Bleris, Leonidas, Măndoiu, Ion, Schwartz, Russell, Wang, Jianxin

Year:

2012

Language:

english

File:

PDF, 651 KB

english, 2012

62

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9096 || Fast Algorithms for Inferring Gene-Species Associations

Harrison, Robert, Li, Yaohang, Măndoiu, Ion

Year:

2015

Language:

english

File:

PDF, 512 KB

english, 2015

63

A Review of the Primer Approximation Multiplex PCR (PAMP) Technique for Detecting Large Scale Cancer Genomic Lesions

Apichonbancha, Kedsuda, Dasgupta, Bhaskar, Jun, Jin, Mandoiu, Ion, Mendonca, Emma

Journal:

Current Bioinformatics

Year:

2009

Language:

english

File:

PDF, 353 KB

english, 2009

64

[IEEE Conference Proceedings. Annual International Conference of the IEEE Engineering in Medicine and Biology Society - New York, NY (2006.08.30-2006.09.3)] 2006 International Conference of the IEEE Engineering in Medicine and Biology Society - Highly Scalable Genotype Phasing by Entropy Minimization

Pasaniuc, Bogdan, Mandoiu, Ion

Year:

2006

Language:

english

File:

PDF, 232 KB

english, 2006

65

Computational Methods for Next Generation Sequencing Data Analysis || Microbiome Analysis: State of the Art and Future Trends

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 961 KB

english, 2016

66

Bioinformatics Algorithms (Techniques and Applications) || Computational Approaches to Predict Protein-Protein and Domain-Domain Interactions

Mǎndoiu, Ion I., Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 305 KB

english, 2008

67

BioSM: Metabolomics Tool for Identifying Endogenous Mammalian Biochemical Structures in Chemical Structure Space

Hamdalla, Mai A., Mandoiu, Ion I., Hill, Dennis W., Rajasekaran, Sanguthevar, Grant, David F.

Journal:

Journal of Chemical Information and Modeling

Year:

2013

Language:

english

File:

PDF, 475 KB

english, 2013

68

TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads

Serghei Mangul, Adrian Caciula, Dumitru Brinza, Ion I Mandoiu…

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 64 KB

english, 2012

69

[IEEE 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Las Vegas, NV, USA (2012.02.23-2012.02.25)] 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Workshop: A maximum likelihood method for quasispecies spectrum assembly

Mancuso, Nicholas, Tork, Bassam, Skums, Pavel, Ganova-Raeva, Lilia, Mandoiu, Ion, Zelikovsky, Alex

Year:

2012

Language:

english

File:

PDF, 97 KB

english, 2012

70

Exact and Approximation Algorithms for DNA Tag Set Design

Măndoiu, Ion I., Trincă, Dragoş

Journal:

Journal of Computational Biology

Year:

2006

Language:

english

File:

PDF, 142 KB

english, 2006

71

[IEEE 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Orlando, FL, USA (2011.02.3-2011.02.5)] 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data

Duitama, Jorge, Srivastava, Pramod K., Mandoiu, Ion I.

Year:

2011

Language:

english

File:

PDF, 173 KB

english, 2011

72

Computational Methods for Next Generation Sequencing Data Analysis || Pooling Strategy for Massive Viral Sequencing

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 634 KB

english, 2016

73

Bioinformatics Algorithms (Techniques and Applications) || Educating Biologists in the 21st Century: Bioinformatics Scientists versus Bioinformatics Technicians

Mǎndoiu, Ion I., Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 91 KB

english, 2008

74

Complete mitochondrial genome of the water vole, Microtus richardsoni (Cricetidae, Rodentia)

Alqahtani, Fahad, Duckett, Drew, Pirro, Stacy, Mandoiu, Ion I.

Journal:

Mitochondrial DNA Part B

Year:

2020

File:

PDF, 824 KB

2020

75

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 12304 (16th International Symposium, ISBRA 2020, Moscow, Russia, December 1â4, 2020, Proceedings) || The Cross-Interpretation of QSAR Toxicological Models

Cai, Zhipeng, Mandoiu, Ion, Narasimhan, Giri, Skums, Pavel, Guo, Xuan

Year:

2020

File:

PDF, 1.04 MB

2020

76

[IEEE 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Miami, FL, USA (2014.6.2-2014.6.4)] 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Deterministic regression algorithm for transcriptome frequency estimation

Caciula, Adrian, Glebova, Olga, Artyomenko, Alexander, Mangul, Serghei, Lindsay, James, Mandoiu, Ion I., Zelikovsky, Alex

Year:

2014

Language:

english

File:

PDF, 135 KB

english, 2014

77

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9096 || Deriving Protein Backbone Using Traces Extracted from Density Maps at Medium Resolutions

Harrison, Robert, Li, Yaohang, Măndoiu, Ion

Year:

2015

Language:

english

File:

PDF, 895 KB

english, 2015

78

Computational Methods for Next Generation Sequencing Data Analysis || Introduction to the Analysis of Environmental Sequence Information Using Metapathways

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 1.29 MB

english, 2016

79

Computational Methods for Next Generation Sequencing Data Analysis || Applications of High-Fidelity Sequencing Protocol to RNA Viruses

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 1011 KB

english, 2016

80

Bioinformatics Algorithms (Techniques and Applications) || Efficient Combinatorial Algorithms for DNA Sequence Processing

Mǎndoiu, Ion I., Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 190 KB

english, 2008

81

High-Throughput SNP Genotyping by SBE/SBH

Mandoiu, Ion I., Prajescu, Claudia

Journal:

IEEE Transactions on NanoBioscience

Year:

2007

Language:

english

File:

PDF, 481 KB

english, 2007

82

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 4463 || A Database for Prediction of Unique Peptide Motifs as Linear Epitopes

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2007

Language:

english

File:

PDF, 1.16 MB

english, 2007

83

Computational Methods for Next Generation Sequencing Data Analysis || Scaffolding Algorithms

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 577 KB

english, 2016

84

Effects of Maternal Nutrition on the Expression of Genomic Imprinted Genes in Ovine Fetuses

Duan, Jingyue (Ellie), Zhang, Mingyuan, Flock, Kaleigh, Seesi, Sahar Al, Mandoiu, Ion, Jones, Amanda, Johnson, Elizabeth, Pillai, Sambhu, Hoffman, Maria, McFadden, Katelyn, Jiang, Hesheng, Reed, Sarah

Journal:

Year:

2018

Language:

english

File:

PDF, 2.97 MB

english, 2018

85

Methylome Dynamics of Bovine Gametes and in vivo Early Embryos

Duan, Jingyue Ellie, Jiang, Zongliang Carl, Alqahtani, Fahad, Mandoiu, Ion, Dong, Hong, Zheng, Xinbao, Marjani, Sadie L., Chen, Jingbo, Tian, Xiuchun Cindy

Journal:

Frontiers in Genetics

Year:

2019

Language:

english

File:

PDF, 2.73 MB

english, 2019

86

Optimum extensions of prefix codes

Ion I. Măndoiu

Journal:

Information Processing Letters

Year:

1998

Language:

english

File:

PDF, 517 KB

english, 1998

87

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 4983 || BioDQ: Data Quality Estimation and Management for Genomics Databases

Măndoiu, Ion, Sunderraman, Raj, Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 254 KB

english, 2008

88

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Reference assisted nucleic acid sequence reconstruction from mass spectrometry data

Ilie, Gabriel, Zelikovsky, Alex, Mandoiu, Ion

Year:

2013

Language:

english

File:

PDF, 115 KB

english, 2013

89

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9096 || Curvilinear Triangular Discretization of Biomedical Images

Harrison, Robert, Li, Yaohang, Măndoiu, Ion

Year:

2015

Language:

english

File:

PDF, 2.73 MB

english, 2015

90

Bioinformatics Algorithms (Techniques and Applications) || Recent Developments in Alignment and Motif Finding for Sequences and Networks

Mǎndoiu, Ion I., Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 155 KB

english, 2008

91

Computational Methods for Next Generation Sequencing Data Analysis || Index

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 58 KB

english, 2016

92

CircMarker: a fast and accurate algorithm for circular RNA detection

Li, Xin, Chu, Chong, Pei, Jingwen, Măndoiu, Ion, Wu, Yufeng

Journal:

Year:

2018

Language:

english

File:

PDF, 1.78 MB

english, 2018

93

Guest Editors' Introduction

Chen, Jianer, Măndoiu, Ion, Sunderraman, Raj, Wang, Jianxin, Zelikovsky, Alexander

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 164 KB

english, 2012

94

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Optimizing pooling strategies for the massive next-generation sequencing of viral samples

Skums, Pavel, Glebova, Olga, Zelikovsky, Alex, Mandoiu, Ion, Khudyakov, Yury

Year:

2013

Language:

english

File:

PDF, 35 KB

english, 2013

95

[ACM Press the 2003 international workshop - Monterey, CA, USA (2003.04.05-2003.04.06)] Proceedings of the 2003 international workshop on System-level interconnect prediction - SLIP '03 - Estimation of wirelength reduction for λ-geometry vs. manhattan placement and routing

Chen, Hongyu, Cheng, Chung-Kuan, Kahng, Andrew B., Mandoiu, Ion, Wang, Qinke

Year:

2003

Language:

english

File:

PDF, 198 KB

english, 2003

96

Computational Methods for Next Generation Sequencing Data Analysis || Computational Methods for Transcript Assembly from RNA-SEQ Reads

Măndoiu, Ion, Zelikovsky, Alexander

Year:

2016

Language:

english

File:

PDF, 293 KB

english, 2016

97

Bioinformatics Algorithms (Techniques and Applications) || Algorithms for Oligonucleotide Microarray Layout

Mǎndoiu, Ion I., Zelikovsky, Alexander

Year:

2008

Language:

english

File:

PDF, 377 KB

english, 2008

98

CD91 on dendritic cells governs immunosurveillance of nascent, emerging tumors

Sedlacek, Abigail L., Younker, Theodore P., Zhou, Yu Jerry, Borghesi, Lisa, Shcheglova, Tatiana, Mandoiu, Ion I., Binder, Robert J.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.04 MB

english, 2019

99

Inferring viral quasispecies spectra from 454 pyrosequencing reads

Irina Astrovskaya, Bassam Tork, Serghei Mangul, Kelly Westbrooks, Ion Măndoiu, Peter Balfe, Alex Zelikovsky

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 760 KB

english, 2011

100

Estimation of alternative splicing isoform frequencies from RNA-Seq data

Marius Nicolae, Serghei Mangul, Ion I Măndoiu, Alex Zelikovsky

Journal:

Algorithms for Molecular Biology

Year:

2011

Language:

english

File:

PDF, 868 KB

english, 2011

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