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51

Gene-expression profiling reveals distinct expression patterns for Classic versus Variant Merkel cell phenotypes and new classifier genes to distinguish Merkel cell from small-cell lung carcinoma

Gele, Mireille Van, Boyle, Glen M, Cook, Anthony L, Vandesompele, Jo, Boonefaes, Tom, Rottiers, Pieter, Roy, Nadine Van, De Paepe, Anne, Parsons, Peter G, Leonard, J Helen

Journal:

Year:

2004

Language:

english

File:

PDF, 261 KB

english, 2004

52

Dickkopf-3 is regulated by the MYCN-induced miR-17-92 cluster in neuroblastoma

Sara De Brouwer, Pieter Mestdagh, Irina Lambertz, Filip Pattyn, Anne De Paepe, Frank Westermann, Christina Schroeder, Johannes H. Schulte, Alexander Schramm, Katleen De Preter, Jo Vandesompele, Frank

Journal:

International Journal of Cancer

Year:

2012

Language:

english

File:

PDF, 1.02 MB

english, 2012

53

Expression profiling suggests underexpression of the GABAA receptor subunit δ in the fragile X knockout mouse model

Ilse Gantois, Jo Vandesompele, Frank Speleman, Edwin Reyniers, Rudi D'Hooge, Lies-Anne Severijnen, Rob Willemsen, Flora Tassone, R. Frank Kooy

Journal:

Neurobiology of Disease

Year:

2006

Language:

english

File:

PDF, 719 KB

english, 2006

54

Neuroblastoma genetics and phenotype: A tale of heterogeneity

Frank Speleman, Katleen De Preter, Jo Vandesompele

Journal:

Seminars in Cancer Biology

Year:

2011

Language:

english

File:

PDF, 293 KB

english, 2011

55

A brief commentary on “Chromosomal aberrations in neuroblastoma cell lines identified by cross species color banding and chromosome painting”

Jo Vandesompele, Frank Speleman

Journal:

Cancer Genetics and Cytogenetics

Year:

2002

Language:

english

File:

PDF, 40 KB

english, 2002

56

Evidence for involvement of a tumor suppressor gene on 1p in malignant peripheral nerve sheath tumors

Nadine Van Roy, Mireille Van Gele, Jo Vandesompele, Ludwine Messiaen, Simon Van Belle, Raf Sciot, Koen Mortéle, Jan Gyselinck, Erna Michiels, Ramses Forsyth, Erik Van Marck, Anne De Paepe, Frank Spele

Journal:

Cancer Genetics and Cytogenetics

Year:

2003

Language:

english

File:

PDF, 119 KB

english, 2003

57

Chromosome 17 involvement in neuroblastoma: An overview

N. Van Roy, P. van der Drift, M. Van Gele, A. Chan, G. Laureys, G. Opdenakker, L. Maertens, J. Vandesompele, R. Versteeg, F. Speleman

Journal:

Cancer Genetics and Cytogenetics

Year:

1997

Language:

english

File:

PDF, 137 KB

english, 1997

58

Identification of two distinct regions on 1p36 involved in merkel cell carcinoma

M. Van Gele, N. Van Roy, M.L. Geerts, J. Lambert, J.M. Naeyaert, L. Messiaen, J. Vandesompele, L. Maertens, F. Speleman

Journal:

Cancer Genetics and Cytogenetics

Year:

1997

Language:

english

File:

PDF, 119 KB

english, 1997

59

Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline

Joachim M De Schrijver, Kim De Leeneer, Steve Lefever, Nick Sabbe, Filip Pattyn, Filip Van Nieuwerburgh, Paul Coucke, Dieter Deforce, Jo Vandesompele, Sofie Bekaert, Jan Hellemans, Wim Van Criekinge

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 557 KB

english, 2010

60

methBLAST and methPrimerDB: web-tools for PCR based methylation analysis

Filip Pattyn, Jasmien Hoebeeck, Piet Robbrecht, Evi Michels, Anne De Paepe, Guy Bottu, David Coornaert, Robert Herzog, Frank Speleman, Jo Vandesompele

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 599 KB

english, 2006

61

Multiplex Amplicon Quantification (MAQ), a fast and efficient method for the simultaneous detection of copy number alterations in neuroblastoma

Candy Kumps, Nadine Van Roy, Lien Heyrman, Dirk Goossens, Jurgen Del-Favero, Rosa Noguera, Jo Vandesompele, Frank Speleman, Katleen De Preter

Journal:

Year:

2010

Language:

english

File:

PDF, 393 KB

english, 2010

62

Combined subtractive cDNA cloning and array CGH: an efficient approach for identification of overexpressed genes in DNA amplicons

Katleen De Preter, Filip Pattyn, Geert Berx, Kristin Strumane, Björn Menten, Frans Van Roy, Anne De Paepe, Frank Speleman, Jo Vandesompele

Journal:

Year:

2004

Language:

english

File:

PDF, 698 KB

english, 2004

63

Positional and functional mapping of a neuroblastoma differentiation gene on chromosome 11

Katleen De Preter, Jo Vandesompele, Björn Menten, Philippa Carr, Heike Fiegler, Anders Edsjö, Nigel P Carter, Nurten Yigit, Wim Waelput, Nadine Van Roy, Scott Bader, Sven Påhlman, Frank Speleman

Journal:

Year:

2005

Language:

english

File:

PDF, 1.92 MB

english, 2005

64

Differential mucosal expression of Th17-related genes between the inflamed colon and ileum of patients with inflammatory bowel disease

Sara Bogaert, Debby Laukens, Harald Peeters, Lode Melis, Kim Olievier, Nico Boon, Gust Verbruggen, Jo Vandesompele, Dirk Elewaut, Martine De Vos

Journal:

Year:

2010

Language:

english

File:

PDF, 840 KB

english, 2010

65

No evidence for involvement ofSDHDin neuroblastoma pathogenesis

Katleen De Preter, Jo Vandesompele, Jasmien Hoebeeck, Caroline Vandenbroecke, Jöel Smet, Annick Nuyts, Geneviève Laureys, Valérie Combaret, Nadine Van Roy, Frank Roels, Rudy Van Coster, Marleen Praet,

Journal:

Year:

2004

Language:

english

File:

PDF, 1.10 MB

english, 2004

66

CADM1is a strong neuroblastoma candidate gene that maps within a 3.72 Mb critical region of loss on 11q23

Evi Michels, Jasmien Hoebeeck, Katleen De Preter, Alexander Schramm, Bénédicte Brichard, Anne De Paepe, Angelika Eggert, Geneviève Laureys, Jo Vandesompele, Frank Speleman

Journal:

Year:

2008

Language:

english

File:

PDF, 616 KB

english, 2008

67

RNA pre-amplification enables large-scale RT-qPCR gene-expression studies on limiting sample amounts

Joëlle Vermeulen, Stefaan Derveaux, Steve Lefever, Els De Smet, Katleen De Preter, Nurten Yigit, Anne De Paepe, Filip Pattyn, Frank Speleman, Jo Vandesompele

Journal:

BMC Research Notes

Year:

2009

Language:

english

File:

PDF, 869 KB

english, 2009

68

Selection of reference genes for quantitative real-time PCR in equinein vivoand fresh and frozen-thawedin vitroblastocysts

Katrien Smits, Karen Goossens, Ann Van Soom, Jan Govaere, Maarten Hoogewijs, Emilie Vanhaesebrouck, Cesare Galli, Silvia Colleoni, Jo Vandesompele, Luc Peelman

Journal:

BMC Research Notes

Year:

2009

Language:

english

File:

PDF, 700 KB

english, 2009

69

Synthetic lethality between Rb, p53 and Dicer or miR-17–92 in retinal progenitors suppresses retinoblastoma formation

Nittner, David, Lambertz, Irina, Clermont, Frederic, Mestdagh, Pieter, Köhler, Corinna, Nielsen, Søren Jensby, Jochemsen, Aart, Speleman, Frank, Vandesompele, Jo, Dyer, Michael A., Schramm, Alexander,

Journal:

Nature Cell Biology

Year:

2012

Language:

english

File:

PDF, 3.53 MB

english, 2012

70

Low-cost dedicated mini-arrays for high-throughput analysis of DNA copy-number alterations in neuroblastoma

Katleen De Preter, Björn Menten, Sara De Brouwer, Candy Kumps, Evi Michels, Nadine Van Roy, Jo Vandesompele, Frank Speleman

Journal:

Year:

2008

Language:

english

File:

PDF, 480 KB

english, 2008

71

Aberrant methylation of candidate tumor suppressor genes in neuroblastoma

Jasmien Hoebeeck, Evi Michels, Filip Pattyn, Valérie Combaret, Joëlle Vermeulen, Nurten Yigit, Claire Hoyoux, Geneviève Laureys, Anne De Paepe, Frank Speleman, Jo Vandesompele

Journal:

Year:

2009

Language:

english

File:

PDF, 549 KB

english, 2009

72

O4: Detection of structural low-grade mosaicism by array CGH

Bernard Thienpont, Nicole Maas, Björn Menten, Karen Buysse, Jo Vandesompele, Cindy Melotte, Thomy de Ravel, Steven Van Vooren, Irina G. Balikova, Liesbeth Backx, Sandra Janssen, Anne De Paepe, Bart De

Journal:

European Journal of Medical Genetics

Year:

2005

Language:

english

File:

PDF, 49 KB

english, 2005

73

Identification of an unbalanced X-autosome translocation by array CGH in a boy with a syndromic form of chondrodysplasia punctata brachytelephalangic type

Björn Menten, Karen Buysse, Jo Vandesompele, Els De Smet, Anne De Paepe, Frank Speleman, Geert Mortier

Journal:

European Journal of Medical Genetics

Year:

2005

Language:

english

File:

PDF, 862 KB

english, 2005

74

P28: array-CGHbase V2: an analysis platform for expression, CGH and SNP microarrays

Björn Menten, Filip Pattyn, Katleen De Preter, Piet Robbrecht, Evi Michels, Karen Buysse, Geert Mortier, Anne De Paepe, Frank Speleman, Jo Vandesompele

Journal:

European Journal of Medical Genetics

Year:

2005

Language:

english

File:

PDF, 39 KB

english, 2005

75

O3: Array CGH findings in a large series of 150 patients with idiopathic mental retardation and congenital anomalies: unexpected findings and implications for future routine diagnostic screening

Björn Menten, Karen Buysse, Nicole Maas, Bernard Thienpont, Jo Vandesompele, Cindy Melotte, Thomy de Ravel, Steven Van Vooren, Irina Balikova, Liesbeth Backx, Sandra Janssens, Anne De Paepe, Bart De M

Journal:

European Journal of Medical Genetics

Year:

2005

Language:

english

File:

PDF, 47 KB

english, 2005

76

P19: LDASS: a novel PCR-based amplification and labelling method for detection of genomic copy number changes using minute amounts of DNA

Katleen De Preter, Frank Speleman, Stefaan Derveaux, Chris Roelant, Jo Vandesompele

Journal:

European Journal of Medical Genetics

Year:

2005

Language:

english

File:

PDF, 43 KB

english, 2005

77

O26: Combined arrayCGH and gene expression profiling delineates clinico-genetic subgroups and identifies rare amplicons encoding neuronal developmental genes

Evi Michels, Jo Vandesompele, Björn Menten, Nadine Van Roy, Geneviève Laureys, Pierre Heimann, Anne De Paepe, Katleen De Preter, Frank Speleman

Journal:

European Journal of Medical Genetics

Year:

2005

Language:

english

File:

PDF, 48 KB

english, 2005

78

O33: Genome wide copy number analysis of 1 ng of genomic DNA using a random primer amplification and labeling method

Jo Vandesompele, Björn Menten, Evi Michels, Els De Smet, Anne De Paepe, Frank Speleman

Journal:

European Journal of Medical Genetics

Year:

2005

Language:

english

File:

PDF, 50 KB

english, 2005

79

Report of a female patient with mental retardation and tall stature due to a chromosomal rearrangement disrupting the OPHN1 gene on Xq12

Björn Menten, Karen Buysse, Stefan Vermeulen, Valerie Meersschaut, Jo Vandesompele, Bee L. Ng, Nigel P. Carter, Geert R. Mortier, Frank Speleman

Journal:

European Journal of Medical Genetics

Year:

2007

Language:

english

File:

PDF, 565 KB

english, 2007

80

P66: Identification of genes involved in T-cell oncogenesis through FISH screening of TCR rearrangements in T-ALL

N Van Roy, B Cauwelier, F Speleman, N Dastugue, J Cools, B Verhasselt, B Poppe, J Vandesompele, M Boogaerts, B De Moerloose, Y Benoit, D Selleslag, J Billiet, F Huguet, P Vandenberghe, A De Paepe, P M

Journal:

European Journal of Medical Genetics

Year:

2005

Language:

english

File:

PDF, 52 KB

english, 2005

81

Positive correlation between relative mRNA expression of PRNP and SPRN in cerebral and cerebellar cortex of sheep

Evelyne Lampo, Mario Van Poucke, Jo Vandesompele, Tim Erkens, Alex Van Zeveren, Luc J. Peelman

Journal:

Molecular and Cellular Probes

Year:

2009

Language:

english

File:

PDF, 195 KB

english, 2009

82

Accurate and objective copy number profiling using real-time quantitative PCR

Barbara D’haene, Jo Vandesompele, Jan Hellemans

Journal:

Year:

2010

Language:

english

File:

PDF, 812 KB

english, 2010

83

Corrigendum to “Accurate and objective copy number profiling using real-time quantitative PCR” [Methods 50 (2010) 262–270]

Barbara D’haene, Jo Vandesompele, Jan Hellemans

Journal:

Year:

2011

File:

PDF, 137 KB

2011

84

Quantification of NF1 transcripts reveals novel highly expressed splice variants

Ina Vandenbroucke, Jo Vandesompele, Anne De Paepe, Ludwine Messiaen

Journal:

Year:

2002

Language:

english

File:

PDF, 117 KB

english, 2002

85

Application of laser capture microdissection in genetic analysis of neuroblastoma and neuroblastoma precursor cells

Katleen De Preter, Jo Vandesompele, Pierre Heimann, Mark M. Kockx, Mireille Van Gele, Jasmien Hoebeeck, Els De Smet, Martine Demarche, Geneviève Laureys, Nadine Van Roy, Anne De Paepe, Frank Speleman

Journal:

Year:

2003

Language:

english

File:

PDF, 398 KB

english, 2003

86

SFCE-05 – Cancérologie, hématologie, immunologie – Classification génomique dans le neuroblastome : utilité pour la prise en charge thérapeutique

G. Schleiermacher, I. Janoueix-Lerosey, E. Michels, V. Mosseri, A. Ribeiro, D. Lequin, J. Vermeulen, J. Vandesompele, G. Pierron, J. Couturier, M. Peuchmaur, E. Barrillot, J. Michon, J. Bénard, A. Val

Journal:

Archives de Pédiatrie

Year:

2008

Language:

french

File:

PDF, 107 KB

french, 2008

87

59-gene prognostic signature sub-stratifies high-risk neuroblastoma patients

Joëlle Vermeulen, Katleen De Preter, Geneviève Laureys, Frank Speleman, Jo Vandesompele

Journal:

The Lancet Oncology

Year:

2009

Language:

english

File:

PDF, 71 KB

english, 2009

88

Molecular Dissection of Isolated Disease Features in Mosaic Neurofibromatosis Type 1

Ophélia Maertens, Sofie De Schepper, Jo Vandesompele, Hilde Brems, Ine Heyns, Sandra Janssens, Frank Speleman, Eric Legius, Ludwine Messiaen

Journal:

The American Journal of Human Genetics

Year:

2007

Language:

english

File:

PDF, 171 KB

english, 2007

89

High-throughput stem-loop RT-qPCR miRNA expression profiling using minute amounts of input RNA

Mestdagh, P., Feys, T., Bernard, N., Guenther, S., Chen, C., Speleman, F., Vandesompele, J.

Journal:

Nucleic Acids Research

Year:

2008

Language:

english

File:

PDF, 387 KB

english, 2008

90

microRNAs in colon cancer: A roadmap for discovery

Simona Rossi, Antonio Fabio Di Narzo, Pieter Mestdagh, Bart Jacobs, Fredrik T. Bosman, Bengt Gustavsson, Bernard Majoie, Arnaud Roth, Jo Vandesompele, Isidore Rigoutsos, Mauro Delorenzi, Sabine Tejpar

Journal:

Year:

2012

Language:

english

File:

PDF, 239 KB

english, 2012

91

Lysine-specific demethylase 1 restricts hematopoietic progenitor proliferation and is essential for terminal differentiation

Sprüssel, A, Schulte, J H, Weber, S, Necke, M, Händschke, K, Thor, T, Pajtler, K W, Schramm, A, König, K, Diehl, L, Mestdagh, P, Vandesompele, J, Speleman, F, Jastrow, H, Heukamp, L C, Schüle, R, Dühr

Journal:

Year:

2012

Language:

english

File:

PDF, 1.25 MB

english, 2012

92

300 The Cystic Fibrosis food pyramid. How to explain daily nutritional requirements to patients with CF

K. De Rijcke, A. Stroobants, V. Charlier, E. De Gorter, K. Delanghe, S. Dereeper, M. Genetello, E. Jorij, L. Peeters, M. Saussez, I. Thiébaut, A. Vandesompel, L. Vanharen

Journal:

Journal of Cystic Fibrosis

Year:

2006

Language:

english

File:

PDF, 126 KB

english, 2006

93

MiR-137 functions as a tumor suppressor in neuroblastoma by downregulating KDM1A

Althoff, Kristina, Beckers, Anneleen, Odersky, Andrea, Mestdagh, Pieter, Köster, Johannes, Bray, Isabella M., Bryan, Kenneth, Vandesompele, Jo, Speleman, Frank, Stallings, Raymond L., Schramm, Alexand

Journal:

International Journal of Cancer

Year:

2013

Language:

english

File:

PDF, 566 KB

english, 2013

94

Regulatory microRNA Network Identification in Bovine Blastocyst Development

Goossens, Karen, Mestdagh, Pieter, Lefever, Steve, Van Poucke, Mario, Van Zeveren, Alex, Van Soom, Ann, Vandesompele, Jo, Peelman, Luc

Journal:

Stem Cells and Development

Year:

2013

Language:

english

File:

PDF, 1.05 MB

english, 2013

95

1.6 BCR Stimulation in CLL, Regardless of Mutation Status, Increases Expression of miR-132 and miR-212

Valerie Pede, Ans Rombout, Jolien Vermeire, Evelien Naessens, Pieter Mestdagh, Nadine Van Roy, Jo Vandesompele, Bruno Verhasselt, Jan Philippé

Journal:

Clinical Lymphoma Myeloma and Leukemia

Year:

2011

Language:

english

File:

PDF, 84 KB

english, 2011

96

A constitutional translocation t(1;17)(p36.2;q11.2) in a neuroblastoma patient disrupts the the human NBPF1 and ACCN1 genes

F. van Roy, K. Vandepoele, N. Van Roy, V. Andries, K. Staes, J.O. Vandesompele, G. Laureys, E. De Smet, G. Berx, F. Speleman

Journal:

European Journal of Cancer Supplements

Year:

2008

Language:

english

File:

PDF, 85 KB

english, 2008

97

384 Dicer1 is a synthetic lethal partner of tumour suppressor p53

D. Nittner, I. Lambertz, A. Schramm, P. Mestdagh, J. Vandesompele, M.A. Dyer, J. Schulte, J.C. Marine

Journal:

European Journal of Cancer Supplements

Year:

2010

Language:

english

File:

PDF, 47 KB

english, 2010

98

Identification of miR-145 as a Key Regulator of the Pigmentary Process

Dynoodt, Peter, Mestdagh, Pieter, Van Peer, Gert, Vandesompele, Jo, Goossens, Karen, Peelman, Luc J, Geusens, Barbara, Speeckaert, Reinhart M, Lambert, Jo L W, Van Gele, Mireille J L

Journal:

The Journal of Investigative Dermatology

Year:

2013

Language:

english

File:

PDF, 8.25 MB

english, 2013

99

Amphiregulin and Epiregulin mRNA Expression in Primary Tumors Predicts Outcome in Metastatic Colorectal Cancer Treated With Cetuximab

Jacobs, B., De Roock, W., Piessevaux, H., Van Oirbeek, R., Biesmans, B., De Schutter, J., Fieuws, S., Vandesompele, J., Peeters, M., Van Laethem, J.-L., Humblet, Y., Penault-Llorca, F., De Hertogh, G.

Journal:

Journal of Clinical Oncology

Year:

2009

Language:

english

File:

PDF, 231 KB

english, 2009

100

The Digital MIQE Guidelines: Minimum Information for Publication of Quantitative Digital PCR Experiments

Huggett, J. F., Foy, C. A., Benes, V., Emslie, K., Garson, J. A., Haynes, R., Hellemans, J., Kubista, M., Mueller, R. D., Nolan, T., Pfaffl, M. W., Shipley, G. L., Vandesompele, J., Wittwer, C. T., Bu

Journal:

Clinical Chemistry

Year:

2013

Language:

english

File:

PDF, 2.55 MB

english, 2013