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101

MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins

Lukasz P Kozlowski, Janusz M Bujnicki

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 378 KB

english, 2012

102

The utility of comparative models and the local model quality for protein crystal structure determination by Molecular Replacement

Marcin Pawlowski, Janusz M Bujnicki

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 329 KB

english, 2012

103

Molecular evolution of dihydrouridine synthases

Joanna M Kasprzak, Anna Czerwoniec, Janusz M Bujnicki

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

104

Related bifunctional restriction endonuclease-methyltransferase triplets: TspDTI, Tth111II/TthHB27I and TsoI with distinct specificities

Zylicz-Stachula, Agnieszka, Zolnierkiewicz, Olga, Lubys, Arvydas, Ramanauskaite, Danute, Mitkaite, Goda, Bujnicki, Janusz M, Skowron, Piotr M

Journal:

BMC Molecular Biology

Year:

2012

Language:

english

File:

PDF, 659 KB

english, 2012

105

Predicting the Complex Structure and Functional Motions of the Outer Membrane Transporter and Signal Transducer FecA

Sen, Taner Z., Kloster, Margaret, Jernigan, Robert L., Kolinski, Andrzej, Bujnicki, Janusz M., Kloczkowski, Andrzej

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 1.35 MB

english, 2008

106

Prediction of Protein Structures, Functions, and Interactions (Bujnicki/Prediction of Protein Structures, Functions, and Interactions) || Integrating Prediction of Structure, Function, and Interactions

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 670 KB

english, 2008

107

Prediction of Protein Structures, Functions, and Interactions (Bujnicki/Prediction of Protein Structures, Functions, and Interactions) || Structure-Based Prediction of Enzymes and Their Active Sites

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 374 KB

english, 2008

108

Prediction of Protein Structures, Functions, and Interactions (Bujnicki/Prediction of Protein Structures, Functions, and Interactions) || The Prediction of Macromolecular Complexes by Docking

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 886 KB

english, 2008

109

Prediction of Protein Structures, Functions, and Interactions (Bujnicki/Prediction of Protein Structures, Functions, and Interactions) || First Steps of Protein Structure Prediction

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 333 KB

english, 2008

110

Prediction of Protein Structures, Functions, and Interactions (Bujnicki/Prediction of Protein Structures, Functions, and Interactions) || Protein Function Prediction via Analysis of Interactomes

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 351 KB

english, 2008

111

Prediction of Protein Structures, Functions, and Interactions (Bujnicki/Prediction of Protein Structures, Functions, and Interactions) || Template Based Prediction of Three-Dimensional Protein Structures: Fold Recognition and Comparative Modeling

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 529 KB

english, 2008

112

Prediction of Protein Structures, Functions, and Interactions (Bujnicki/Prediction of Protein Structures, Functions, and Interactions) || Template-Free Predictions of Three-Dimensional Protein Structures: From First Principles to Knowledge-Based Potentials

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 414 KB

english, 2008

113

Prediction of Protein Structures, Functions, and Interactions (Bujnicki/Prediction of Protein Structures, Functions, and Interactions) || Index

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 115 KB

english, 2008

114

Prediction of Protein Structures, Functions, and Interactions (Bujnicki/Prediction of Protein Structures, Functions, and Interactions) || Prediction of Molecular Interactions from 3D-Structures: From Small Ligands to Large Protein Complexes

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 477 KB

english, 2008

115

Prediction of Protein Structures, Functions, and Interactions (Bujnicki/Prediction of Protein Structures, Functions, and Interactions) || Quality Assessment of Protein Models

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 231 KB

english, 2008

116

Prediction of Protein Structures, Functions, and Interactions (Bujnicki/Prediction of Protein Structures, Functions, and Interactions) || The Basics of Protein Sequence Analysis

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 560 KB

english, 2008

117

Prediction of Protein Structures, Functions, and Interactions (Bujnicki/Prediction of Protein Structures, Functions, and Interactions) || Automated Prediction of Protein Function from Sequence

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 393 KB

english, 2008

118

Prediction of Protein Structures, Functions, and Interactions (Bujnicki/Prediction of Protein Structures, Functions, and Interactions) || Front Matter

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 152 KB

english, 2008

119

Prediction of Protein Structures, Functions, and Interactions (Bujnicki/Prediction of Protein Structures, Functions, and Interactions) || Colour Plates

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 777 KB

english, 2008

120

A novel homozygous p.Arg527Leu LMNA mutation in two unrelated Egyptian families causes overlapping mandibuloacral dysplasia and progeria syndrome

Al-Haggar, Mohammad, Madej-Pilarczyk, Agnieszka, Kozlowski, Lukasz, Bujnicki, Janusz M, Yahia, Sohier, Abdel-Hadi, Dina, Shams, Amany, Ahmad, Nermin, Hamed, Sahar, Puzianowska-Kuznicka, Monika

Journal:

European Journal of Human Genetics

Year:

2012

Language:

english

File:

PDF, 1.31 MB

english, 2012

121

Evaluation of Molecular Models for the Affinity Maturation of Antibodies: Roles of Cytosine Deamination by AID and DNA Repair

Samaranayake, Mala, Bujnicki, Janusz M., Carpenter, Michael, Bhagwat, Ashok S.

Journal:

Chemical Reviews

Year:

2006

Language:

english

File:

PDF, 933 KB

english, 2006

122

Correction: Cell death upon epigenetic genome methylation: a novel function of methyl-specific deoxyribonucleases

Eri Fukuda, Katarzyna H Kaminska, Janusz M Bujnicki, Ichizo Kobayashi

Journal:

Year:

2012

Language:

english

File:

PDF, 73 KB

english, 2012

123

Cell death upon epigenetic genome methylation: a novel function of methyl-specific deoxyribonucleases

Eri Fukuda, Katarzyna H Kaminska, Janusz M Bujnicki, Ichizo Kobayashi

Journal:

Year:

2008

Language:

english

File:

PDF, 1.61 MB

english, 2008

124

Reassignment of specificities of two cap methyltransferase domains in the reovirus lambda2 protein

Janusz M Bujnicki, Leszek Rychlewski

Journal:

Year:

2001

Language:

english

File:

PDF, 1.86 MB

english, 2001

125

[Nucleic Acids and Molecular Biology] Practical Bioinformatics Volume 15 ||

Bujnicki, Janusz M.

Year:

2008

Language:

english

File:

PDF, 13.11 MB

english, 2008

126

Computational modeling of protein–RNA complex structures

Tuszynska, Irina, Matelska, Dorota, Magnus, Marcin, Chojnowski, Grzegorz, Kasprzak, Joanna M., Kozlowski, Lukasz P., Dunin-Horkawicz, Stanislaw, Bujnicki, Janusz M.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.34 MB

english, 2014

127

Solution conformation of adenovirus virus associated RNA-I and its interaction with PKR

Dzananovic, Edis, Patel, Trushar R., Chojnowski, Grzegorz, Boniecki, Michal J., Deo, Soumya, McEleney, Kevin, Harding, Stephen E., Bujnicki, Janusz M., McKenna, Sean A.

Journal:

Journal of Structural Biology

Year:

2014

Language:

english

File:

PDF, 1.33 MB

english, 2014

128

Statins Impair Glucose Uptake in Tumor Cells

Malenda, Agata, Skrobanska, Anna, Issat, Tadeusz, Winiarska, Magdalena, Bil, Jacek, Oleszczak, Bozenna, Sinski, Maciej, Firczuk, Małgorzata, Bujnicki, Janusz M., Chlebowska, Justyna, Staruch, Adam D.,

Journal:

Year:

2012

Language:

english

File:

PDF, 1.25 MB

english, 2012

129

Topology of Large RNA Junctions Explored by High-Precision FRET

Seidel, Claus A.M., Vardanyan, Hayk, Sindbert, Simon, Kalinin, Stanislav, Doroshenko, Olga, Lach, Grzegorz, Bujnicki, Janusz M., Hanke, Christian, Gohlke, Holger

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 139 KB

english, 2014

130

Structural and degradative aspects of ornithine decarboxylase antizyme inhibitor 2

Ramos-Molina, Bruno, Lambertos, Ana, Lopez-Contreras, Andrés J., Kasprzak, Joanna M., Czerwoniec, Anna, Bujnicki, Janusz M., Cremades, Asunción, Peñafiel, Rafael

Journal:

Year:

2014

Language:

english

File:

PDF, 2.70 MB

english, 2014

131

Female-specific gene expression in dioecious liverwort Pellia endiviifolia is developmentally regulated and connected to archegonia production

Izabela Sierocka,Lukasz P Kozlowski,Janusz M Bujnicki…

Journal:

BMC Plant Biology

Year:

2014

Language:

english

File:

PDF, 972 KB

english, 2014

132

Integrating ELF4 into the circadian system through combined structural and functional studies

Kolmos, Elsebeth, Nowak, Monika, Werner, Maria, Fischer, Katrin, Schwarz, Guenter, Mathews, Sarah, Schoof, Heiko, Nagy, Ferenc, Bujnicki, Janusz M., Davis, Seth J.

Journal:

Year:

2009

Language:

english

File:

PDF, 641 KB

english, 2009

133

Designability landscape reveals sequence features that define axial helix rotation in four-helical homo-oligomeric antiparallel coiled-coil structures

Szczepaniak, Krzysztof, Lach, Grzegorz, Bujnicki, Janusz M., Dunin-Horkawicz, Stanislaw

Journal:

Journal of Structural Biology

Year:

2014

Language:

english

File:

PDF, 2.94 MB

english, 2014

134

Sterol Methyltransferase: Functional Analysis of Highly Conserved Residues by Site-Directed Mutagenesis †

Nes, W. David, Jayasimha, Pruthvi, Zhou, Wenxu, Kanagasabai, Ragu, Jin, Changxiao, Jaradat, Tahhan T., Shaw, Robert W., Bujnicki, Janusz M.

Journal:

Year:

2004

Language:

english

File:

PDF, 136 KB

english, 2004

135

Experimental Evidence for a ββα-Me-Finger Nuclease Motif To Represent the Active Site of the Caspase-Activated DNase †

Scholz, Sebastian R., Korn, Christian, Bujnicki, Janusz M., Gimadutdinow, Oleg, Pingoud, Alfred, Meiss, Gregor

Journal:

Year:

2003

Language:

english

File:

PDF, 282 KB

english, 2003

136

Identification of base-specific contacts in protein?DNA complexes by photocrosslinking and mass spectrometry: a case study using the restriction endonuclease SsoII

Pingoud, Vera, Geyer, Hildegard, Geyer, Rudolf, Kubareva, Elena, Bujnicki, Janusz M., Pingoud, Alfred

Journal:

Molecular BioSystems

Year:

2005

Language:

english

File:

PDF, 471 KB

english, 2005

137

Distribution and frequencies of post-transcriptional modifications in tRNAs

Machnicka, Magdalena A, Olchowik, Anna, Grosjean, Henri, Bujnicki, Janusz M

Journal:

Year:

2014

Language:

english

File:

PDF, 2.74 MB

english, 2014

138

Specificity Changes in the Evolution of Type II Restriction Endonucleases

Pingoud, Vera, Sudina, Anna, Geyer, Hildegard, Bujnicki, Janusz M., Lurz, Rudi, Lüder, Gerhild, Morgan, Richard, Kubareva, Elena, Pingoud, Alfred

Journal:

Journal of Biological Chemistry

Year:

2005

Language:

english

File:

PDF, 1.13 MB

english, 2005

139

Evolutionary Relationship between Different Subgroups of Restriction Endonucleases

Pingoud, Vera, Kubareva, Elena, Stengel, Gudrun, Friedhoff, Peter, Bujnicki, Janusz M., Urbanke, Claus, Sudina, Anna, Pingoud, Alfred

Journal:

Journal of Biological Chemistry

Year:

2002

Language:

english

File:

PDF, 986 KB

english, 2002

140

Characterization of the termini of the West Nile virus genome and their interactions with the small isoform of the 2′ 5′-oligoadenylate synthetase family

Deo, Soumya, Patel, Trushar R., Chojnowski, Grzegorz, Koul, Amit, Dzananovic, Edis, McEleney, Kevin, Bujnicki, Janusz M., McKenna, Sean A.

Journal:

Journal of Structural Biology

Year:

2015

Language:

english

File:

PDF, 2.62 MB

english, 2015

141

Functional analysis of amino acid residues at the dimerisation interface of KpnI DNA methyltransferase

Bheemanaik, Shivakumara, Bujnicki, Janusz M., Nagaraja, Valakunja, Rao, Desirazu N.

Journal:

Biological Chemistry

Year:

2006

Language:

english

File:

PDF, 364 KB

english, 2006

142

Is the HemK Family of Putative S-Adenosylmethionine-Dependent Methyltransferases a "Missing" zeta Subfamily of Adenine Methyltransferases? A Hypothesis

Bujnicki, Janusz M., Radlinska, Monika

Journal:

Year:

1999

Language:

english

File:

PDF, 213 KB

english, 1999

143

Angiogenesis Inhibitors Specific for Methionine Aminopeptidase 2 as Drugs for Malaria and Leishmaniasis

Zhang, Peng, Nicholson, Diarmuid E., Bujnicki, Janusz M., Su, Xinzhuan, Brendle, James J., Ferdig, Michael, Kyle, Dennis E., Milhous, Wilbur K., Chiang, Peter K.

Journal:

Journal of Biomedical Science

Year:

2002

Language:

english

File:

PDF, 632 KB

english, 2002

144

Malaria: Therapy, Genes and Vaccines

Chiang, Peter, Bujnicki, Janusz, Su, Xinzhuan, Lanar, David

Journal:

Current Molecular Medicine

Year:

2006

Language:

english

File:

PDF, 195 KB

english, 2006

145

The Signature of the Five-Stranded vRRM Fold Defined by Functional, Structural and Computational Analysis of the hnRNP L Protein

Blatter, Markus, Dunin-Horkawicz, Stanislaw, Grishina, Inna, Maris, Christophe, Thore, Stephane, Maier, Timm, Bindereif, Albrecht, Bujnicki, Janusz M., Allain, Frédéric H.-T.

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 2.90 MB

english, 2015

146

Brickworx builds recurrent RNA and DNA structural motifs into medium- and low-resolution electron-density maps

Chojnowski, Grzegorz, Waleń, Tomasz, Piątkowski, Paweł, Potrzebowski, Wojciech, Bujnicki, Janusz M.

Journal:

Acta Crystallographica Section D Biological Crystallography

Year:

2015

Language:

english

File:

PDF, 1.09 MB

english, 2015

147

Bioinformatics and Computational Biology in Poland

Bujnicki, Janusz M., Tiuryn, Jerzy, Przytycka, Teresa M.

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 429 KB

english, 2013

148

Structure and intrinsic disorder of the proteins of the Trypanosoma brucei editosome

Czerwoniec, Anna, Kasprzak, Joanna M., Bytner, Patrycja, Dobrychłop, Mateusz, Bujnicki, Janusz M.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.96 MB

english, 2015

149

Structural analysis of human 2′-O-ribose methyltransferases involved in mRNA cap structure formation

Smietanski, Miroslaw, Werner, Maria, Purta, Elzbieta, Kaminska, Katarzyna H., Stepinski, Janusz, Darzynkiewicz, Edward, Nowotny, Marcin, Bujnicki, Janusz M.

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 1.97 MB

english, 2014

150

An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies

Chawla, Mohit, Oliva, Romina, Bujnicki, Janusz M., Cavallo, Luigi

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.10 MB

english, 2015