Jay A. Shendure: search on Z-Library

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51

Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants

Fu, Wenqing, O’Connor, Timothy D., Jun, Goo, Kang, Hyun Min, Abecasis, Goncalo, Leal, Suzanne M., Gabriel, Stacey, Altshuler, David, Shendure, Jay, Nickerson, Deborah A., Bamshad, Michael J., NHLBI Ex

Journal:

Year:

2012

Language:

english

File:

PDF, 778 KB

english, 2012

52

Transcriptome-wide miR-155 Binding Map Reveals Widespread Noncanonical MicroRNA Targeting

Loeb, Gabriel B., Khan, Aly A., Canner, David, Hiatt, Joseph B., Shendure, Jay, Darnell, Robert B., Leslie, Christina S., Rudensky, Alexander Y.

Journal:

Year:

2012

Language:

english

File:

PDF, 2.07 MB

english, 2012

53

Poxviruses Deploy Genomic Accordions to Adapt Rapidly against Host Antiviral Defenses

Elde, Nels C., Child, Stephanie J., Eickbush, Michael T., Kitzman, Jacob O., Rogers, Kelsey S., Shendure, Jay, Geballe, Adam P., Malik, Harmit S.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.32 MB

english, 2012

54

A genome-wide 3C-method for characterizing the three-dimensional architectures of genomes

Zhijun Duan, Mirela Andronescu, Kevin Schutz, Choli Lee, Jay Shendure, Stanley Fields, William S. Noble, C. Anthony Blau

Journal:

Year:

2012

Language:

english

File:

PDF, 999 KB

english, 2012

55

Next-generation human genetics

Journal:

Year:

2011

Language:

english

File:

PDF, 98 KB

english, 2011

56

Mammalian X Upregulation Is Associated with Enhanced Transcription Initiation, RNA Half-Life, and MOF-Mediated H4K16 Acetylation

Deng, Xinxian, Berletch, Joel B., Ma, Wenxiu, Nguyen, Di Kim, Hiatt, Joseph B., Noble, William S., Shendure, Jay, Disteche, Christine M.

Journal:

Developmental Cell

Year:

2013

Language:

english

File:

PDF, 2.43 MB

english, 2013

57

Noninvasive fetal genome sequencing: a primer

Snyder, Matthew W., Simmons, LaVone E., Kitzman, Jacob O., Santillan, Donna A., Santillan, Mark K., Gammill, Hilary S., Shendure, Jay

Journal:

Prenatal Diagnosis

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

58

Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model

Smith, Robin P, Taher, Leila, Patwardhan, Rupali P, Kim, Mee J, Inoue, Fumitaka, Shendure, Jay, Ovcharenko, Ivan, Ahituv, Nadav

Journal:

Nature Genetics

Year:

2013

Language:

english

File:

PDF, 1.28 MB

english, 2013

59

The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line

Adey, Andrew, Burton, Joshua N., Kitzman, Jacob O., Hiatt, Joseph B., Lewis, Alexandra P., Martin, Beth K., Qiu, Ruolan, Lee, Choli, Shendure, Jay

Journal:

Year:

2013

Language:

english

File:

PDF, 869 KB

english, 2013

60

Next-generation human genetics

Journal:

Year:

2011

Language:

english

File:

PDF, 333 KB

english, 2011

61

Next-generation human genetics

Journal:

Year:

2011

Language:

english

File:

PDF, 373 KB

english, 2011

62

Computational discovery of sense-antisense transcription in the human and mouse genomes

Jay Shendure, George M Church

Journal:

Year:

2002

Language:

english

File:

PDF, 2.58 MB

english, 2002

63

Next generation sequence analysis for mitochondrial disorders

Valeria Vasta, Sarah B Ng, Emily H Turner, Jay Shendure, Si Houn Hahn

Journal:

Genome Medicine

Year:

2009

Language:

english

File:

PDF, 106 KB

english, 2009

64

A suppressor screen in Mecp2 mutant mice implicates cholesterol metabolism in Rett syndrome

Buchovecky, Christie M, Turley, Stephen D, Brown, Hannah M, Kyle, Stephanie M, McDonald, Jeffrey G, Liu, Benny, Pieper, Andrew A, Huang, Wenhui, Katz, David M, Russell, David W, Shendure, Jay, Justice

Journal:

Nature Genetics

Year:

2013

Language:

english

File:

PDF, 831 KB

english, 2013

65

Targeted enrichment and high-resolution digital profiling of mitochondrial DNA deletions in human brain

Taylor, Sean D., Ericson, Nolan G., Burton, Joshua N., Prolla, Tomas A., Silber, John R., Shendure, Jay, Bielas, Jason H.

Journal:

Year:

2014

Language:

english

File:

PDF, 447 KB

english, 2014

66

Methods for Genomic Partitioning

Turner, Emily H., Ng, Sarah B., Nickerson, Deborah A., Shendure, Jay

Journal:

Annual Review of Genomics and Human Genetics

Year:

2009

Language:

english

File:

PDF, 777 KB

english, 2009

67

Rare-Variant Extensions of the Transmission Disequilibrium Test: Application to Autism Exome Sequence Data

He, Zongxiao, O’Roak, Brian J., Smith, Joshua D., Wang, Gao, Hooker, Stanley, Santos-Cortez, Regie Lyn P., Li, Biao, Kan, Mengyuan, Krumm, Nik, Nickerson, Deborah A., Shendure, Jay, Eichler, Evan E.,

Journal:

The American Journal of Human Genetics

Year:

2014

Language:

english

File:

PDF, 649 KB

english, 2014

68

Tagmentation-based whole-genome bisulfite sequencing

Wang, Qi, Gu, Lei, Adey, Andrew, Radlwimmer, Bernhard, Wang, Wei, Hovestadt, Volker, Bähr, Marion, Wolf, Stephan, Shendure, Jay, Eils, Roland, Plass, Christoph, Weichenhan, Dieter

Journal:

Nature Protocols

Year:

2013

Language:

english

File:

PDF, 789 KB

english, 2013

69

Publisher's note

Journal:

Animal Reproduction Science

Year:

1991

Language:

english

File:

PDF, 52 KB

english, 1991

70

2012 Curt Stern Award Address1

Journal:

The American Journal of Human Genetics

Year:

2013

Language:

english

File:

PDF, 1.08 MB

english, 2013

71

A Non-Active-Site SET Domain Surface Crucial for the Interaction of MLL1 and the RbBP5/Ash2L Heterodimer within MLL Family Core Complexes

Shinsky, Stephen A., Hu, Michael, Vought, Valarie E., Ng, Sarah B., Bamshad, Michael J., Shendure, Jay, Cosgrove, Michael S.

Journal:

Journal of Molecular Biology

Year:

2014

Language:

english

File:

PDF, 1.85 MB

english, 2014

72

Successes and challenges of using whole exome sequencing to identify novel genes underlying an inherited predisposition for thoracic aortic aneurysms and acute aortic dissections

Milewicz, Dianna M., Regalado, Ellen S., Shendure, Jay, Nickerson, Deborah A., Guo, Dong-chuan

Journal:

Trends in Cardiovascular Medicine

Year:

2014

Language:

english

File:

PDF, 589 KB

english, 2014

73

Identification of novel HLA class II target epitopes for generation of donor-specific T regulatory cells

Stone, Brad, Rieck, Mary, Rawlings, Crystal A., Kas, Arnold, Shendure, Jay, Jones, Hywel, Buckner, Jane H.

Journal:

Clinical Immunology

Year:

2012

Language:

english

File:

PDF, 785 KB

english, 2012

74

Resolving genomic disorder–associated breakpoints within segmental DNA duplications using massively parallel sequencing

Nuttle, Xander, Itsara, Andy, Shendure, Jay, Eichler, Evan E

Journal:

Nature Protocols

Year:

2014

Language:

english

File:

PDF, 1.01 MB

english, 2014

75

Saturation editing of genomic regions by multiplex homology-directed repair

Findlay, Gregory M., Boyle, Evan A., Hause, Ronald J., Klein, Jason C., Shendure, Jay

Journal:

Year:

2014

Language:

english

File:

PDF, 3.61 MB

english, 2014

76

De novo TBR1 mutations in sporadic autism disrupt protein functions

Deriziotis, Pelagia, O’Roak, Brian J., Graham, Sarah A., Estruch, Sara B., Dimitropoulou, Danai, Bernier, Raphael A., Gerdts, Jennifer, Shendure, Jay, Eichler, Evan E., Fisher, Simon E.

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 1.15 MB

english, 2014

77

Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains

Salipante, Stephen J., Roach, David J., Kitzman, Jacob O., Snyder, Matthew W., Stackhouse, Bethany, Butler-Wu, Susan M., Lee, Choli, Cookson, Brad T., Shendure, Jay

Journal:

Genome Research

Year:

2015

Language:

english

File:

PDF, 1015 KB

english, 2015

78

Genome interrupted: sequencing of prostate cancer reveals the importance of chromosomal rearrangements

Akash Kumar,Jay Shendure,Peter S Nelson

Journal:

Genome Medicine

Year:

2011

Language:

english

File:

PDF, 321 KB

english, 2011

79

Primate evolution of the recombination regulator PRDM9

Schwartz, Jerrod J., Roach, David J., Thomas, James H., Shendure, Jay

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 496 KB

english, 2014

80

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity

Adey, Andrew, Kitzman, Jacob O., Burton, Joshua N., Daza, Riza, Kumar, Akash, Christiansen, Lena, Ronaghi, Mostafa, Amini, Sasan, L. Gunderson, Kevin, Steemers, Frank J., Shendure, Jay

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 707 KB

english, 2014

81

Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes

Ma, Wenxiu, Ay, Ferhat, Lee, Choli, Gulsoy, Gunhan, Deng, Xinxian, Cook, Savannah, Hesson, Jennifer, Cavanaugh, Christopher, Ware, Carol B, Krumm, Anton, Shendure, Jay, Blau, Carl Anthony, Disteche, C

Journal:

Year:

2014

Language:

english

File:

PDF, 1.47 MB

english, 2014

82

Detection of minimal residual disease in NPM1-mutated acute myeloid leukemia by next-generation sequencing

Salipante, Stephen J, Fromm, Jonathan R, Shendure, Jay, Wood, Brent L, Wu, David

Journal:

Modern Pathology

Year:

2014

Language:

english

File:

PDF, 298 KB

english, 2014

83

Massively parallel single-amino-acid mutagenesis

Kitzman, Jacob O, Starita, Lea M, Lo, Russell S, Fields, Stanley, Shendure, Jay

Journal:

Year:

2015

Language:

english

File:

PDF, 1.21 MB

english, 2015

84

Rapid and accurate large-scale genotyping of duplicated genes and discovery of interlocus gene conversions

Nuttle, Xander, Huddleston, John, O'Roak, Brian J, Antonacci, Francesca, Fichera, Marco, Romano, Corrado, Shendure, Jay, Eichler, Evan E

Journal:

Year:

2013

Language:

english

File:

PDF, 1019 KB

english, 2013

85

Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster

Deng, Xinxian, Hiatt, Joseph B, Nguyen, Di Kim, Ercan, Sevinc, Sturgill, David, Hillier, LaDeana W, Schlesinger, Felix, Davis, Carrie A, Reinke, Valerie J, Gingeras, Thomas R, Shendure, Jay, Waterston

Journal:

Nature Genetics

Year:

2011

Language:

english

File:

PDF, 1.26 MB

english, 2011

86

MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

Carlson, Keisha D., Sudmant, Peter H., Press, Maximilian O., Eichler, Evan E., Shendure, Jay, Queitsch, Christine

Journal:

Genome Research

Year:

2015

Language:

english

File:

PDF, 1.27 MB

english, 2015

87

Copy-Number Variation and False Positive Prenatal Aneuploidy Screening Results

Snyder, Matthew W., Simmons, LaVone E., Kitzman, Jacob O., Coe, Bradley P., Henson, Jessica M., Daza, Riza M., Eichler, Evan E., Shendure, Jay, Gammill, Hilary S.

Journal:

New England Journal of Medicine

Year:

2015

Language:

english

File:

PDF, 512 KB

english, 2015

88

The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation

Yang, Fan, Deng, Xinxian, Ma, Wenxiu, Berletch, Joel B, Rabaia, Natalia, Wei, Gengze, Moore, James M, Filippova, Galina N, Xu, Jun, Liu, Yajuan, Noble, William S, Shendure, Jay, Disteche, Christine M

Journal:

Year:

2015

Language:

english

File:

PDF, 1.75 MB

english, 2015

89

Life after genetics

Journal:

Genome Medicine

Year:

2014

Language:

english

File:

PDF, 151 KB

english, 2014

90

Whole genome prediction for preimplantation genetic diagnosis

Kumar, Akash, Ryan, Allison, Kitzman, Jacob O, Wemmer, Nina, Snyder, Matthew W, Sigurjonsson, Styrmir, Lee, Choli, Banjevic, Milena, Zarutskie, Paul W, Lewis, Alexandra P, Shendure, Jay, Rabinowitz, M

Journal:

Genome Medicine

Year:

2015

Language:

english

File:

PDF, 1.19 MB

english, 2015

91

Mutations in DYNC2LI1 disrupt cilia function and cause short rib polydactyly syndrome

Taylor, S. Paige, Dantas, Tiago J., Duran, Ivan, Wu, Sulin, Lachman, Ralph S., Bamshad, Michael J., Shendure, Jay, Nickerson, Deborah A., Nelson, Stanley F., Cohn, Daniel H., Vallee, Richard B., Krako

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 3.37 MB

english, 2015

92

Adaptive Gene Amplification As an Intermediate Step in the Expansion of Virus Host Range

Brennan, Greg, Kitzman, Jacob O., Rothenburg, Stefan, Shendure, Jay, Geballe, Adam P., Condit, Richard C.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.45 MB

english, 2014

93

Escape from X Inactivation Varies in Mouse Tissues

Berletch, Joel B., Ma, Wenxiu, Yang, Fan, Shendure, Jay, Noble, William S., Disteche, Christine M., Deng, Xinxian, Bartolomei, Marisa S

Journal:

Year:

2015

Language:

english

File:

PDF, 1.88 MB

english, 2015

94

Systematic Dissection of Coding Exons at Single Nucleotide Resolution Supports an Additional Role in Cell-Specific Transcriptional Regulation

Birnbaum, Ramon Y., Patwardhan, Rupali P., Kim, Mee J., Findlay, Gregory M., Martin, Beth, Zhao, Jingjing, Bell, Robert J. A., Smith, Robin P., Ku, Angel A., Shendure, Jay, Ahituv, Nadav, Snyder, Mich

Journal:

Year:

2014

Language:

english

File:

PDF, 2.48 MB

english, 2014

95

A homozygous missense variant in type I keratin KRT25 causes autosomal recessive woolly hair

Ansar, Muhammad, Raza, Syed Irfan, Lee, Kwanghyuk, Irfanullah,, Shahi, Shamim, Acharya, Anushree, Dai, Hang, Smith, Joshua D, Shendure, Jay, Bamshad, Michael J, Nickerson, Deborah A, Santos-Cortez, R

Journal:

Journal of Medical Genetics

Year:

2015

Language:

english

File:

PDF, 976 KB

english, 2015

96

Running spell-check to identify regulatory variants

Kircher, Martin, Shendure, Jay

Journal:

Nature Genetics

Year:

2015

Language:

english

File:

PDF, 268 KB

english, 2015

97

High-throughput determination of RNA structure by proximity ligation

Ramani, Vijay, Qiu, Ruolan, Shendure, Jay

Journal:

Nature Biotechnology

Year:

2015

Language:

english

File:

PDF, 3.23 MB

english, 2015

98

Cancer Genomes on a Shoestring Budget

Shendure, Jay, Stewart, Colin J.

Journal:

Boston Medical and Surgical Journal

Year:

2009

Language:

english

File:

PDF, 86 KB

english, 2009

99

Decoding Long Nanopore Reads of Bacteriophage Phi X 174

Laszlo, Andrew H., Derrington, Ian M., Ross, Brian C., Brinkerhoff, Henry, Adey, Andrew C., Nova, Ian C., Craig, Jon M., Langford, Kyle W., Samson, Jenny Mae, Daza, Riza, Doering, Kenji, Shendure, Jay

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 39 KB

english, 2015

100

Large-scale targeted sequencing comparison highlights extreme genetic heterogeneity in nephronophthisis-related ciliopathies

Schueler, Markus, Halbritter, Jan, Phelps, Ian G, Braun, Daniela A, Otto, Edgar A, Porath, Jonathan D, Gee, Heon Yung, Shendure, Jay, O'Roak, Brian J, Lawson, Jennifer A, Nabhan, Marwa M, Soliman, Nev

Journal:

Journal of Medical Genetics

Year:

2015

Language:

english

File:

PDF, 681 KB

english, 2015