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51

Tractography Study of Deep Brain Stimulation of the Anterior Cingulate Cortex in Chronic Pain: Key to Improve the Targeting

Boccard, Sandra G.J., Fernandes, Henrique M., Jbabdi, Saad, Van Hartevelt, Tim J., Kringelbach, Morten L., Quaghebeur, Gerardine, Moir, Liz, Mancebo, Victor Piqueras, Pereira, Erlick A.C., Fitzgerald,

Journal:

World Neurosurgery

Year:

2016

Language:

english

File:

PDF, 13.03 MB

english, 2016

52

The Temporoparietal Fiber Intersection Area and Wernicke Perpendicular Fasciculus

Bartsch, Andreas Joachim, Geletneky, Karsten, Jbabdi, Saad

Journal:

Year:

2013

Language:

english

File:

PDF, 386 KB

english, 2013

53

A model for extra-axonal diffusion spectra with frequency-dependent restriction

Lam, Wilfred W., Jbabdi, Saâd, Miller, Karla L.

Journal:

Magnetic Resonance in Medicine

Year:

2015

Language:

english

File:

PDF, 1.32 MB

english, 2015

54

Multimodal population brain imaging in the UK Biobank prospective epidemiological study

Miller, Karla L, Alfaro-Almagro, Fidel, Bangerter, Neal K, Thomas, David L, Yacoub, Essa, Xu, Junqian, Bartsch, Andreas J, Jbabdi, Saad, Sotiropoulos, Stamatios N, Andersson, Jesper L R, Griffanti, Lu

Journal:

Nature Neuroscience

Year:

2016

Language:

english

File:

PDF, 11.08 MB

english, 2016

55

Concurrent white matter bundles and grey matter networks using independent component analysis

O'Muircheartaigh, Jonathan, Jbabdi, Saad

Journal:

Year:

2017

Language:

english

File:

PDF, 2.52 MB

english, 2017

56

Choice of reference measurements affects quantification of long diffusion time behaviour using stimulated echoes

Kleinnijenhuis, Michiel, Mollink, Jeroen, Lam, Wilfred W., Kinchesh, Paul, Khrapitchev, Alexandre A., Smart, Sean C., Jbabdi, Saad, Miller, Karla L.

Journal:

Magnetic Resonance in Medicine

Year:

2017

Language:

english

File:

PDF, 474 KB

english, 2017

57

Time-efficient and flexible design of optimized multishell HARDI diffusion

Hutter, Jana, Tournier, J. Donald, Price, Anthony N., Cordero-Grande, Lucilio, Hughes, Emer J., Malik, Shaihan, Steinweg, Johannes, Bastiani, Matteo, Sotiropoulos, Stamatios N., Jbabdi, Saad, Andersso

Journal:

Magnetic Resonance in Medicine

Year:

2017

Language:

english

File:

PDF, 1.56 MB

english, 2017

58

Investigation of Slow-wave Activity Saturation during Surgical Anesthesia Reveals a Signature of Neural Inertia in Humans

Warnaby, Catherine E., Sleigh, Jamie W., Hight, Darren, Jbabdi, Saad, Tracey, Irene

Journal:

Year:

2017

Language:

english

File:

PDF, 2.63 MB

english, 2017

59

Improved tractography using asymmetric fibre orientation distributions

Bastiani, Matteo, Cottaar, Michiel, Dikranian, Krikor, Ghosh, Aurobrata, Zhang, Hui, Alexander, Daniel C., Behrens, Timothy E., Jbabdi, Saad, Sotiropoulos, Stamatios N.

Journal:

Year:

2017

Language:

english

File:

PDF, 6.93 MB

english, 2017

60

Pathology of callosal damage in ALS: An ex-vivo , 7 T diffusion tensor MRI study

Cardenas, Agustin M., Sarlls, Joelle E., Kwan, Justin Y., Bageac, Devin, Gala, Zachary S., Danielian, Laura E., Ray-Chaudhury, Abhik, Wang, Hao-Wei, Miller, Karla L., Foxley, Sean, Jbabdi, Saad, Welsh

Journal:

NeuroImage: Clinical

Year:

2017

Language:

english

File:

PDF, 1.02 MB

english, 2017

61

Subthalamic deep brain stimulation sweet spots and hyperdirect cortical connectivity in Parkinson's disease

Akram, Harith, Sotiropoulos, Stamatios N., Jbabdi, Saad, Georgiev, Dejan, Mahlknecht, Philipp, Hyam, Jonathan, Foltynie, Thomas, Limousin, Patricia, De Vita, Enrico, Jahanshahi, Marjan, Hariz, Marwan,

Journal:

Year:

2017

Language:

english

File:

PDF, 4.71 MB

english, 2017

62

Image processing and Quality Control for the first 10,000 brain imaging datasets from UK Biobank

Alfaro-Almagro, Fidel, Jenkinson, Mark, Bangerter, Neal K., Andersson, Jesper L.R., Griffanti, Ludovica, Douaud, Gwenaëlle, Sotiropoulos, Stamatios N., Jbabdi, Saad, Hernandez-Fernandez, Moises, Valle

Journal:

Year:

2017

Language:

english

File:

PDF, 5.81 MB

english, 2017

63

Neuroimage special issue on brain segmentation and parcellation - Editorial

Craddock, R. Cameron, Bellec, Pierre, Jbabdi, Saad

Journal:

Year:

2017

Language:

english

File:

PDF, 861 KB

english, 2017

64

Connectivity and the search for specializations in the language-capable brain

Mars, Rogier B, Eichert, Nicole, Jbabdi, Saad, Verhagen, Lennart, Rushworth, Matthew F.S.

Journal:

Current Opinion in Behavioral Sciences

Year:

2018

Language:

english

File:

PDF, 1022 KB

english, 2018

65

Functional segmentation of the anterior limb of the internal capsule: linking white matter abnormalities to specific connections.

Safadi, Ziad, Grisot, Giorgia, Jbabdi, Saad, Behrens, Tim, Heilbronner, Sarah R., McLaughlin, Nicole C.R., Mandeville, Joe, Versace, Amelia, Phillips, Mary L., Lehman, Julia, Yendiki, Anastasia, Haber

Journal:

Journal of Neuroscience

Year:

2018

Language:

english

File:

PDF, 2.62 MB

english, 2018

66

137. Location of Anterior Cingulate and Ventrolateral Prefrontal Cortical Hubs: Integration Between Emotional and Cognitive Functions

Tang, Wei, Yendiki, Anastasia, Jbabdi, Saad, Haber, Suzanne

Journal:

Biological Psychiatry

Year:

2018

Language:

english

File:

PDF, 42 KB

english, 2018

67

Dissecting the pathobiology of altered MRI signal in amyotrophic lateral sclerosis: A post mortem whole brain sampling strategy for the integration of ultra-high-field MRI and quantitative neuropathology

Pallebage-Gamarallage, Menuka, Foxley, Sean, Menke, Ricarda A. L., Huszar, Istvan N., Jenkinson, Mark, Tendler, Benjamin C., Wang, Chaoyue, Jbabdi, Saad, Turner, Martin R., Miller, Karla L., Ansorge,

Journal:

BMC Neuroscience

Year:

2018

Language:

english

File:

PDF, 4.60 MB

english, 2018

68

What is special about the human arcuate fasciculus? Lateralization, projections, and expansion

Eichert, Nicole, Verhagen, Lennart, Folloni, Davide, Jbabdi, Saad, Khrapitchev, Alexandre A., Sibson, Nicola R., Mantini, Dante, Sallet, Jerome, Mars, Rogier B.

Journal:

Year:

2018

Language:

english

File:

PDF, 1023 KB

english, 2018

69

Quantitative theory of deep brain stimulation of the subthalamic nucleus for the suppression of pathological rhythms in Parkinson’s disease

Müller, Eli J., Robinson, Peter A., Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 2.87 MB

english, 2018

70

Ensemble Tractography

Takemura, Hiromasa, Caiafa, Cesar F., Wandell, Brian A., Pestilli, Franco, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 1.72 MB

english, 2016

71

Brain network eigenmodes provide a robust and compact representation of the structural connectome in health and disease

Wang, Maxwell B., Owen, Julia P., Mukherjee, Pratik, Raj, Ashish, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 9.94 MB

english, 2017

72

Estimation of Directed Effective Connectivity from fMRI Functional Connectivity Hints at Asymmetries of Cortical Connectome

Gilson, Matthieu, Moreno-Bote, Ruben, Ponce-Alvarez, Adrián, Ritter, Petra, Deco, Gustavo, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 5.36 MB

english, 2016

73

The Impact of Cortical Lesions on Thalamo-Cortical Network Dynamics after Acute Ischaemic Stroke: A Combined Experimental and Theoretical Study

van Wijngaarden, Joeri B. G., Zucca, Riccardo, Finnigan, Simon, Verschure, Paul F. M. J., Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 2.13 MB

english, 2016

74

Functionality and Robustness of Injured Connectomic Dynamics in C. elegans: Linking Behavioral Deficits to Neural Circuit Damage

Kunert, James M., Maia, Pedro D., Kutz, J. Nathan, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.95 MB

english, 2017

75

From correlation to causation: Estimating effective connectivity from zero-lag covariances of brain signals

Schiefer, Jonathan, Niederbühl, Alexander, Pernice, Volker, Lennartz, Carolin, Hennig, Jürgen, LeVan, Pierre, Rotter, Stefan, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 14.58 MB

english, 2018

76

A biophysical model of dynamic balancing of excitation and inhibition in fast oscillatory large-scale networks

Abeysuriya, Romesh G., Hadida, Jonathan, Sotiropoulos, Stamatios N., Jbabdi, Saad, Becker, Robert, Hunt, Benjamin A. E., Brookes, Matthew J., Woolrich, Mark W., Marinazzo, Daniele

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 6.27 MB

english, 2018

77

Accelerating Fibre Orientation Estimation from Diffusion Weighted Magnetic Resonance Imaging Using GPUs

Hernández, Moisés, Guerrero, Ginés D., Cecilia, José M., García, José M., Inuggi, Alberto, Jbabdi, Saad, Behrens, Timothy E. J., Sotiropoulos, Stamatios N., Yacoub, Essa

Journal:

Year:

2013

Language:

english

File:

PDF, 2.25 MB

english, 2013

78

Biobeam—Multiplexed wave-optical simulations of light-sheet microscopy

Weigert, Martin, Subramanian, Kaushikaram, Bundschuh, Sebastian T., Myers, Eugene W., Kreysing, Moritz, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 6.90 MB

english, 2018

79

Subgraphs of functional brain networks identify dynamical constraints of cognitive control

Khambhati, Ankit N., Medaglia, John D., Karuza, Elisabeth A., Thompson-Schill, Sharon L., Bassett, Danielle S., Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 9.87 MB

english, 2018

80

Design of optimal nonlinear network controllers for Alzheimer's disease

Sanchez-Rodriguez, Lazaro M., Iturria-Medina, Yasser, Baines, Erica A., Mallo, Sabela C., Dousty, Mehdy, Sotero, Roberto C., Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 12.43 MB

english, 2018

81

Mechanisms of hysteresis in human brain networks during transitions of consciousness and unconsciousness: theoretical principles and empirical evidence

Kim, Hyoungkyu, Moon, Joon-Young, Mashour, George A., Lee, UnCheol, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 6.04 MB

english, 2018

82

Calcium imaging and dynamic causal modelling reveal brain-wide changes in effective connectivity and synaptic dynamics during epileptic seizures

Rosch, Richard E., Hunter, Paul R., Baldeweg, Torsten, Friston, Karl J., Meyer, Martin P., Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 6.91 MB

english, 2018

83

Modeling and prediction of clinical symptom trajectories in Alzheimer’s disease using longitudinal data

Bhagwat, Nikhil, Viviano, Joseph D., Voineskos, Aristotle N., Chakravarty, M. Mallar, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 8.51 MB

english, 2018

84

Connectivity Fingerprints: From Areal Descriptions to Abstract Spaces

Mars, Rogier B., Passingham, Richard E., Jbabdi, Saad

Journal:

Trends in Cognitive Sciences

Year:

2018

Language:

english

File:

PDF, 2.17 MB

english, 2018

85

Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction

Bastiani, Matteo, Cottaar, Michiel, Fitzgibbon, Sean P., Suri, Sana, Alfaro-Almagro, Fidel, Sotiropoulos, Stamatios N., Jbabdi, Saad, Andersson, Jesper

Journal:

Year:

2018

Language:

english

File:

PDF, 7.49 MB

english, 2018

86

Data-driven brain network models differentiate variability across language tasks

Bansal, Kanika, Medaglia, John D., Bassett, Danielle S., Vettel, Jean M., Muldoon, Sarah F., Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 7.16 MB

english, 2018

87

Multivariate classification of neuroimaging data with nested subclasses: Biased accuracy and implications for hypothesis testing

Jamalabadi, Hamidreza, Alizadeh, Sarah, Schönauer, Monika, Leibold, Christian, Gais, Steffen, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 3.97 MB

english, 2018

88

Using GPUs to accelerate computational diffusion MRI: From microstructure estimation to tractography and connectomes

Hernandez-Fernandez, Moises, Reguly, Istvan, Jbabdi, Saad, Giles, Mike, Smith, Stephen, Sotiropoulos, Stamatios N.

Journal:

Year:

2018

Language:

english

File:

PDF, 7.65 MB

english, 2018

89

A spectrum of routing strategies for brain networks

Avena-Koenigsberger, Andrea, Yan, Xiaoran, Kolchinsky, Artemy, van den Heuvel, Martijn, Hagmann, Patric, Sporns, Olaf, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 5.80 MB

2019

90

The spatial correspondence and genetic influence of interhemispheric connectivity with white matter microstructure

Mollink, Jeroen, Smith, Stephen M., Elliott, Lloyd T., Kleinnijenhuis, Michiel, Hiemstra, Marlies, Alfaro-Almagro, Fidel, Marchini, Jonathan, van Cappellen van Walsum, Anne-Marie, Jbabdi, Saad, Miller

Journal:

Nature Neuroscience

Year:

2019

Language:

english

File:

PDF, 4.12 MB

english, 2019

91

Representational structure or task structure? Bias in neural representational similarity analysis and a Bayesian method for reducing bias

Cai, Ming Bo, Schuck, Nicolas W., Pillow, Jonathan W., Niv, Yael, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 4.54 MB

english, 2019

92

Structural variability in the human brain reflects fine-grained functional architecture at the population level

Smith, Stephen, Duff, Eugene, Groves, Adrian, Nichols, Thomas E., Jbabdi, Saad, Westlye, Lars T., Tamnes, Christian K., Engvig, Andreas, Walhovd, Kristine B., Fjell, Anders M., Johansen-Berg, Heidi, D

Journal:

Journal of Neuroscience

Year:

2019

Language:

english

File:

PDF, 5.38 MB

english, 2019

93

Joint modelling of diffusion MRI and microscopy

Howard, Amy FD., Mollink, Jeroen, Kleinnijenhuis, Michiel, Pallebage-Gamarallage, Menuka, Bastiani, Matteo, Cottaar, Michiel, Miller, Karla L., Jbabdi, Saad

Journal:

Year:

2019

Language:

english

File:

PDF, 7.42 MB

english, 2019

94

Differential sustained and transient temporal processing across visual streams

Stigliani, Anthony, Jeska, Brianna, Grill-Spector, Kalanit, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 2.24 MB

english, 2019

95

Differential sustained and transient temporal processing across visual streams

Stigliani, Anthony, Jeska, Brianna, Grill-Spector, Kalanit, Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 2.24 MB

2019

96

Auditory and pain processing is severely disrupted at slow wave activity saturation under general anaesthesia

Holmgren, Jostein, Prisco, Lara, Chiew, Mark, Jbabdi, Saad, Allen, Miles, Sleigh, Jamie, Tracey, Irene, Warnaby, Catherine E.

Journal:

British Journal of Anaesthesia

Year:

2019

Language:

english

File:

PDF, 201 KB

english, 2019

97

Auditory and pain processing is severely disrupted at slow wave activity saturation under general anaesthesia

Holmgren, Jostein, Prisco, Lara, Chiew, Mark, Jbabdi, Saad, Allen, Miles, Sleigh, Jamie, Tracey, Irene, Warnaby, Catherine E.

Journal:

British Journal of Anaesthesia

Year:

2019

File:

PDF, 201 KB

2019

98

Feasibility of functional magnetic resonance imaging of ocular dominance and orientation preference in primary visual cortex

Menezes de Oliveira, Marilia, Pang, James C., Robinson, Peter A., Liu, Xiaochen, Schira, Mark M., Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 10.02 MB

english, 2019

99

Circuits, networks, and neuropsychiatric disease: transitioning from anatomy to imaging.

Haber, Suzanne N., Tang, Wei, Choi, Eun Young, Yendiki, Anastasia, Liu, Hesheng, Jbabdi, Saad, Versace, Amelia, Phillips, Mary

Journal:

Biological Psychiatry

Year:

2019

Language:

english

File:

PDF, 5.05 MB

english, 2019

100

Feasibility of functional magnetic resonance imaging of ocular dominance and orientation preference in primary visual cortex

Menezes de Oliveira, Marilia, Pang, James C., Robinson, Peter A., Liu, Xiaochen, Schira, Mark M., Jbabdi, Saad

Journal:

PLoS Computational Biology

Year:

2019

File:

PDF, 10.02 MB

2019