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51

Confirmation of Organized Modularity in the Yeast Interactome

Bertin, Nicolas, Simonis, Nicolas, Dupuy, Denis, Cusick, Michael E., Han, Jing-Dong J., Fraser, Hunter B., Roth, Frederick P., Vidal, Marc

Journal:

Year:

2007

Language:

english

File:

PDF, 512 KB

english, 2007

52

Role of polymorphisms in BCL-2 and BAX genes in modulating the risk of developing non-Hodgkin lymphoma

Wang, Wan-Ling, Tao, Yi-Peng, Han, Xiao-Lin, Li, Xue, Zi, You-Mei, Yang, Cui, Li, Jing-Dong

Journal:

Leukemia and Lymphoma

Year:

2014

Language:

english

File:

PDF, 144 KB

english, 2014

53

Modified fusion probability by reflection boundary

Han, Jie, Bao, Jing-Dong

Journal:

Chinese Physics C

Year:

2015

Language:

english

File:

PDF, 4.47 MB

english, 2015

54

Xbp1-mediated histone H4 deacetylation contributes to DNA double-strand break repair in yeast

Tao, Ran, Chen, Hua, Gao, Chan, Xue, Peng, Yang, Fuquan, Han, Jing-Dong J, Zhou, Bing, Chen, Ye-Guang

Journal:

Year:

2011

Language:

english

File:

PDF, 1.24 MB

english, 2011

55

Genome-wide analysis of histone acetylation dynamics during mouse embryonic stem cell neural differentiation

Liu, Pingyu, Dou, Xiaoyang, Peng, Guangdun, Han, Jing-Dong Jackie, Jing, Naihe

Journal:

Year:

2015

Language:

english

File:

PDF, 209 KB

english, 2015

56

Understanding super-enhancers

Cheng, Hao, Dou, Xiaoyang, Han, Jing-Dong J.

Journal:

SCIENCE CHINA Life Sciences

Year:

2016

Language:

english

File:

PDF, 298 KB

english, 2016

57

A Systems Approach to Reverse Engineer Lifespan Extension by Dietary Restriction

Hou, Lei, Wang, Dan, Chen, Di, Liu, Yi, Zhang, Yue, Cheng, Hao, Xu, Chi, Sun, Na, McDermott, Joseph, Mair, William B., Han, Jing-Dong J.

Journal:

Cell Metabolism

Year:

2016

Language:

english

File:

PDF, 2.97 MB

english, 2016

58

Genome-wide ChIP-seq and RNA-seq analyses of Pou3f1 during mouse pluripotent stem cell neural fate commitment

Song, Lu, Sun, Na, Peng, Guangdun, Chen, Jun, Han, Jing-Dong Jackie, Jing, Naihe

Journal:

Year:

2015

Language:

english

File:

PDF, 418 KB

english, 2015

59

Bioimaging for quantitative phenotype analysis

Chen, Weiyang, Xia, Xian, Huang, Yi, Chen, Xingwei, Han, Jing-Dong J.

Journal:

Year:

2016

Language:

english

File:

PDF, 429 KB

english, 2016

60

Systems Biology in Aging: Linking the Old and the Young

Hou, Lei, Huang, Jialiang, D. Green, Christopher, Boyd-Kirkup, Jerome, Zhang, Wei, Yu, Xiaoming, Gong, Wenxuan, Zhou, Bing, J. Han, Jing-Dong

Journal:

Current Genomics

Year:

2012

Language:

english

File:

PDF, 487 KB

english, 2012

61

The effects of graded levels of calorie restriction: IV. Non-linear change in behavioural phenotype of mice in response to short-term calorie restriction

Lusseau, David, Mitchell, Sharon E., Barros, Ceres, Derous, Davina, Green, Cara, Chen, Luonan, Han, Jing-Dong Jackie, Wang, Yingchun, Promislow, Daniel E. L., Douglas, Alex, Speakman, John R.

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.56 MB

english, 2015

62

Genomewide Analysis of Rat Periaqueductal Gray-Dorsal Horn Reveals Time-, Region- and Frequency-Specific mRNA Expression Changes in Response to Electroacupuncture Stimulation

Wang, Ke, Xiang, Xiao-Hui, Qiao, Nan, Qi, Jun-Yi, Lin, Li-Bo, Zhang, Rong, Shou, Xiao-jing, Ping, Xing-Jie, Han, Ji-Sheng, Han, Jing-Dong, Zhao, Guo-Ping, Cui, Cai-Lian

Journal:

Scientific Reports

Year:

2014

Language:

english

File:

PDF, 1.92 MB

english, 2014

63

Dissecting the precise role of H3K9 methylation in crosstalk with DNA maintenance methylation in mammals

Zhao, Qian, Zhang, Jiqin, Chen, Ruoyu, Wang, Lina, Li, Bo, Cheng, Hao, Duan, Xiaoya, Zhu, Haijun, Wei, Wei, Li, Jiwen, Wu, Qihan, Han, Jing-Dong J., Yu, Wenqiang, Gao, Shaorong, Li, Guohong, Wong, Jie

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.99 MB

english, 2016

64

LIN-28 balances longevity and germline stem cell number in Caenorhabditis elegans through let-7 / AKT / DAF-16 axis

Wang, Dan, Hou, Lei, Nakamura, Shuhei, Su, Ming, Li, Fang, Chen, Weiyang, Yan, Yizhen, Green, Christopher D., Chen, Di, Zhang, Hong, Antebi, Adam, Han, Jing-Dong J.

Journal:

Year:

2017

Language:

english

File:

PDF, 579 KB

english, 2017

65

BMP restricts stemness of intestinal Lgr5+ stem cells by directly suppressing their signature genes

Qi, Zhen, Li, Yehua, Zhao, Bing, Xu, Chi, Liu, Yuan, Li, Haonan, Zhang, Bingjie, Wang, Xinquan, Yang, Xiao, Xie, Wei, Li, Baojie, Han, Jing-Dong Jackie, Chen, Ye-Guang

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 3.72 MB

english, 2017

66

Activin/Smad2-induced Histone H3 Lys-27 Trimethylation (H3K27me3) Reduction Is Crucial to Initiate Mesendoderm Differentiation of Human Embryonic Stem Cells

Wang, Lu, Xu, Xuanhao, Cao, Yaqiang, Li, Zhongwei, Cheng, Hao, Zhu, Gaoyang, Duan, Fuyu, Na, Jie, Han, Jing-Dong J., Chen, Ye-Guang

Journal:

Journal of Biological Chemistry

Year:

2017

Language:

english

File:

PDF, 3.88 MB

english, 2017

67

The effects of graded levels of calorie restriction: IX. Global metabolomic screen reveals modulation of carnitines, sphingolipids and bile acids in the liver of C57BL/6 mice

Green, Cara L., Mitchell, Sharon E., Derous, Davina, Wang, Yingchun, Chen, Luonan, Han, Jing-Dong J., Promislow, Daniel E. L., Lusseau, David, Douglas, Alex, Speakman, John R.

Journal:

Year:

2017

Language:

english

File:

PDF, 764 KB

english, 2017

68

Spatial transcriptomic analysis of cryosectioned tissue samples with Geo-seq

Chen, Jun, Suo, Shengbao, Tam, Patrick PL, Han, Jing-Dong J, Peng, Guangdun, Jing, Naihe

Journal:

Nature Protocols

Year:

2017

Language:

english

File:

PDF, 2.90 MB

english, 2017

69

Transcriptome analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA double-strand break repair in primate oocytes and early embryos

Wang, Xinyi, Liu, Denghui, He, Dajian, Suo, Shengbao, Xia, Xian, He, Xiechao, Han, Jing-Dong J., Zheng, Ping

Journal:

Genome Research

Year:

2017

Language:

english

File:

PDF, 7.09 MB

english, 2017

70

Impact of Dietary Interventions on Noncoding RNA Networks and mRNAs Encoding Chromatin-Related Factors

Green, Christopher D., Huang, Yi, Dou, Xiaoyang, Yang, Liu, Liu, Yong, Han, Jing-Dong J.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.87 MB

english, 2017

71

Low NKD1 expression predicts adverse prognosis in cytogenetically normal acute myeloid leukemia

Zhou, Jing-dong, Yao, Dong-ming, Han, Li, Xiao, Gao-fei, Guo, Hong, Zhang, Ting-juan, Li, Xi-xi, Yuan, Qian, Yang, Lei, Lin, Jiang, Qian, Jun

Journal:

Year:

2017

Language:

english

File:

PDF, 562 KB

english, 2017

72

The system capacity view of aging and longevity

Han, Jing-Dong J., Hou, Lei, Sun, Na, Xu, Chi, McDermott, Joseph, Wang, Dan

Journal:

Quantitative Biology

Year:

2017

Language:

english

File:

PDF, 405 KB

english, 2017

73

Corrigendum: Transcriptome analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA double-strand break repair in primate oocytes and early embryos

Wang, Xinyi, Liu, Denghui, He, Dajian, Suo, Shengbao, Xia, Xian, He, Xiechao, Han, Jing-Dong J., Zheng, Ping

Journal:

Genome Research

Year:

2017

Language:

english

File:

PDF, 80 KB

english, 2017

74

Sweroside eradicated leukemia cells and attenuated pathogenic processes in mice by inducing apoptosis

Han, Xiao-Lin, Li, Jing-Dong, Wang, Wan-Ling, Yang, Cui, Li, Zhi-Ying

Journal:

Biomedicine & Pharmacotherapy

Year:

2017

Language:

english

File:

PDF, 4.03 MB

english, 2017

75

Transcriptome analysis reveals determinant stages controlling human embryonic stem cell commitment to neuronal cells

Li, Yuanyuan, Wang, Ran, Qiao, Nan, Peng, Guangdun, Zhang, Ke, Tang, Ke, Han, Jing-dong J, Jing, Naihe

Journal:

Journal of Biological Chemistry

Year:

2017

Language:

english

File:

PDF, 11.22 MB

english, 2017

76

CXXC5 suppresses hepatocellular carcinoma by promoting TGF-β-induced cell cycle arrest and apoptosis

Yan, Xiaohua, Wu, Jingyi, Jiang, Quanlong, Cheng, Hao, Han, Jing-Dong J., Chen, Ye-Guang

Journal:

Journal of Molecular Cell Biology

Year:

2017

Language:

english

File:

PDF, 618 KB

english, 2017

77

Inference of differentiation time for single cell transcriptomes using cell population reference data

Sun, Na, Yu, Xiaoming, Li, Fang, Liu, Denghui, Suo, Shengbao, Chen, Weiyang, Chen, Shirui, Song, Lu, Green, Christopher D., McDermott, Joseph, Shen, Qin, Jing, Naihe, Han, Jing-Dong J.

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 1.61 MB

english, 2017

78

Immune mechanisms induced by an HSV-1 mutant strain: Discrepancy analysis of the immune system gene profile in comparison with a wild-type strain

Zhang, Xiaolong, Jiang, Quanlong, Xu, Xingli, Wang, Yongrong, Liu, Lei, Lian, Yaru, Li, Hao, Wang, Lichun, Zhang, Ying, Jiang, Guorun, Zeng, Jieyuan, Zhang, Han, Han, Jing-Dong Jackie, Li, Qihan

Journal:

Year:

2018

Language:

english

File:

PDF, 2.58 MB

english, 2018

79

The Effects of Graded Levels of Calorie Restriction: XIII. Global Metabolomics Screen Reveals Graded Changes in Circulating Amino Acids, Vitamins, and Bile Acids in the Plasma of C57BL/6 Mice

Green, Cara L, Soltow, Quinlyn A, Mitchell, Sharon E, Derous, Davina, Wang, Yingchun, Chen, Luonan, Han, Jing-Dong J, Promislow, Daniel E L, Lusseau, David, Douglas, Alex, Jones, Dean P, Speakman, Joh

Journal:

The Journals of Gerontology Series A Biological Sciences and Medical Sciences

Year:

2018

Language:

english

File:

PDF, 798 KB

english, 2018

80

Correction to: Effect of long non-coding RNA Gas5 on proliferation, migration, invasion and apoptosis of colorectal cancer HT-29 cell line

Li, Jin, Wang, Yuan, Zhang, Cheng-Gong, Xiao, Han-Juan, Hu, Jun-Ming, He, Jing-Dong

Journal:

Cancer Cell International

Year:

2018

Language:

english

File:

PDF, 631 KB

english, 2018

81

Classification and prediction of toxicity of chemicals using an automated phenotypic profiling of Caenorhabditis elegans

Gao, Shan, Chen, Weiyang, Zeng, Yingxin, Jing, Haiming, Zhang, Nan, Flavel, Matthew, Jois, Markandeya, Han, Jing-Dong J., Xian, Bo, Li, Guojun

Journal:

BMC Pharmacology and Toxicology

Year:

2018

Language:

english

File:

PDF, 2.41 MB

english, 2018

82

The transcription factor Pou3f1 promotes neural fate commitment via activation of neural lineage genes and inhibition of external signaling pathways

Zhu, Qingqing, Song, Lu, Peng, Guangdun, Sun, Na, Chen, Jun, Zhang, Ting, Sheng, Nengyin, Tang, Wei, Qian, Cheng, Qiao, Yunbo, Tang, Ke, Han, Jing-Dong Jackie, Li, Jinsong, Jing, Naihe

Journal:

Year:

2014

Language:

english

File:

PDF, 6.43 MB

english, 2014

83

Nkx2.5 marks angioblasts that contribute to hemogenic endothelium of the endocardium and dorsal aorta

Zamir, Lyad, Singh, Reena, Nathan, Elisha, Patrick, Ralph, Yifa, Oren, Yahalom-Ronen, Yfat, Arraf, Alaa A, Schultheiss, Thomas M, Suo, Shengbao, Han, Jing-Dong Jackie, Peng, Guangdun, Jing, Naihe, Wan

Journal:

Year:

2017

Language:

english

File:

PDF, 17.64 MB

english, 2017

84

Repression of human and mouse brain inflammaging transcriptome by broad gene-body histone hyperacetylation

Cheng, Hao, Xuan, Hongwen, Green, Christopher D., Han, Yixing, Sun, Na, Shen, Hongjie, McDermott, Joseph, Bennett, David A., Lan, Fei, Han, Jing-Dong J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 2.83 MB

english, 2018

85

Aging and Alzheimer’s disease: Comparison and associations from molecular to system level

Xia, Xian, Jiang, Quanlong, McDermott, Joseph, Han, Jing-Dong J.

Journal:

Year:

2018

Language:

english

File:

PDF, 447 KB

english, 2018

86

A gene regulatory network anchored by LIM homeobox 1 (LHX1) for embryonic head development

Sibbritt, Tennille, Ip, Chi K., Khoo, Poh-Lynn, Wilkie, Emilie, Jones, Vanessa, Sun, Jane Q. J., Shen, Joanne X., Peng, Guangdun, Han, Jing-Dong J., Jing, Naihe, Osteil, Pierre, Ramialison, Mirana, Ta

Journal:

Year:

2018

Language:

english

File:

PDF, 1.48 MB

english, 2018

87

Single cell RNA-sequencing reveals the existence of naïve and primed pluripotency in pre-implantation rhesus monkey embryos

Liu, Denghui, Wang, Xinyi, He, Dajian, Sun, Chunli, He, Xiechao, Yan, Lanzhen, Li, Yizhou, Han, Jing-Dong J, Zheng, Ping

Journal:

Genome Research

Year:

2018

Language:

english

File:

PDF, 6.84 MB

english, 2018

88

HER2/EGFR-AKT signaling switches TGF-β from inhibiting cell proliferation to promoting cell migration in breast cancer

Huang, Fei, Shi, Qiaoni, Li, Yuzhen, Xu, Linlin, Xu, Chi, Chen, Fenfang, Wang, Hai, Liao, Hongwei, Chang, Zai, Liu, Fang, Zhang, Xiang H-F, Feng, Xin-Hua, Han, Jing-Dong J, Luo, Shiwen, Chen, Ye-Guang

Journal:

Cancer Research

Year:

2018

Language:

english

File:

PDF, 12.88 MB

english, 2018

89

Molecular and phenotypic biomarkers of aging

Xia, Xian, Chen, Weiyang, McDermott, Joseph, Han, Jing-Dong Jackie

Journal:

Year:

2017

Language:

english

File:

PDF, 901 KB

english, 2017

90

Inter-nucleosomal communication between histone modifications for nucleosome phasing

Chen, Weizhong, Liu, Yi, Zhu, Shanshan, Chen, Guoyu, Han, Jing-Dong J., Yue, Feng

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 21.98 MB

english, 2018

91

Accurate Drug Repositioning through Non-tissue-Specific Core Signatures from Cancer Transcriptomes

Xu, Chi, Ai, Daosheng, Suo, Shengbao, Chen, Xingwei, Yan, Yizhen, Cao, Yaqiang, Sun, Na, Chen, Weizhong, McDermott, Joseph, Zhang, Shiqiang, Zeng, Yingying, Han, Jing-Dong Jackie

Journal:

Year:

2018

Language:

english

File:

PDF, 3.52 MB

english, 2018

92

H3K14me3 genomic distributions and its regulation by KDM4 family demethylases

Zhao, Bin, Xu, Wenqi, Rong, Bowen, Chen, Guoyu, Ye, Xuanjia, Dai, Ruofei, Li, Wenjing, Chen, Jiajia, Cai, Jiajun, Song, Lei, Luo, Zhao-Qing, Zeng, Rong, Shi, Yang, Han, Jing-Dong J., Lan, Fei

Journal:

Year:

2018

Language:

english

File:

PDF, 814 KB

english, 2018

93

Widespread roles of enhancer-like transposable elements in cell identity and long-range genomic interactions

Cao, Yaqiang, Chen, Guoyu, Wu, Gang, Zhang, Xiaoli, McDermott, Joseph, Chen, Xingwei, Xu, Chi, Jiang, Quanlong, Chen, Zhaoxiong, Zeng, Yingying, Ai, Daosheng, Huang, Yi, Han, Jing-Dong J

Journal:

Genome Research

Year:

2018

Language:

english

File:

PDF, 10.61 MB

english, 2018

94

The effects of graded levels of calorie restriction: V. Impact of short term calorie and protein restriction on physical activity in the C57BL/6 mouse

Mitchell, Sharon E., Delville, Camille, Konstantopedos, Penelope, Derous, Davina, Green, Cara L., Wang, Yingchun, Han, Jing-Dong J., Promislow, Daniel E.L., Douglas, Alex, Chen, Luonan, Lusseau, David

Journal:

Year:

2016

Language:

english

File:

PDF, 2.48 MB

english, 2016

95

Author Correction: H3K14me3 genomic distributions and its regulation by KDM4 family demethylases

Zhao, Bin, Xu, Wenqi, Rong, Bowen, Chen, Guoyu, Ye, Xuanjia, Dai, Ruofei, Li, Wenjing, Chen, Jiajia, Cai, Jiajun, Song, Lei, Luo, Zhao-Qing, Zeng, Rong, Shi, Yang, Han, Jing-Dong J., Lan, Fei

Journal:

Year:

2018

Language:

english

File:

PDF, 338 KB

english, 2018

96

Regulatory network characterization in development: challenges and opportunities

Peng, Guangdun, Han, Jing-Dong J.

Journal:

Year:

2018

File:

PDF, 1.01 MB

2018

97

Immune Cell Types and Secreted Factors Contributing to Inflammation-to-Cancer Transition and Immune Therapy Response

Chen, Xingwei, Xu, Chi, Hong, Shengjun, Xia, Xian, Cao, Yaqiang, McDermott, Joseph, Mu, Yonglin, Han, Jing-Dong J.

Journal:

Year:

2019

Language:

english

File:

PDF, 10.28 MB

english, 2019

98

A High-throughput Assay for the Prediction of Chemical Toxicity by Automated Phenotypic Profiling of Caenorhabditis elegans

Gao, Shan, Chen, Weiyang, Zhang, Nan, Xu, Chi, Jing, Haiming, Zhang, Wenjing, Han, Gaochao, Flavel, Matthew, Jois, Markandeya, Zeng, Yingxin, Han, Jing-Dong J., Xian, Bo, Li, Guojun

Journal:

Journal of Visualized Experiments

Year:

2019

File:

PDF, 908 KB

2019

99

A High-throughput Assay for the Prediction of Chemical Toxicity by Automated Phenotypic Profiling of Caenorhabditis elegans

Gao, Shan, Chen, Weiyang, Zhang, Nan, Xu, Chi, Jing, Haiming, Zhang, Wenjing, Han, Gaochao, Flavel, Matthew, Jois, Markandeya, Zeng, Yingxin, Han, Jing-Dong J., Xian, Bo, Li, Guojun

Journal:

Journal of Visualized Experiments

Year:

2019

Language:

english

File:

PDF, 908 KB

english, 2019

100

The Effects of Graded Levels of Calorie Restriction: XIV. Global Metabolomics Screen Reveals Brown Adipose Tissue Changes in Amino Acids, Catecholamines, and Antioxidants After Short-Term Restriction in C57BL/6 Mice

Green, Cara L, Mitchell, Sharon E, Derous, Davina, Wang, Yingchun, Chen, Luonan, Han, Jing-Dong J, Promislow, Daniel E L, Lusseau, David, Douglas, Alex, Speakman, John R

Journal:

The Journals of Gerontology Series A Biological Sciences and Medical Sciences

Year:

2019

File:

PDF, 1.29 MB

2019