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51

What Determines the Structure and Stability of KFFE Monomers, Dimers, and Protofibrils?

Bellesia, Giovanni, Shea, Joan-Emma

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 1.13 MB

english, 2009

52

Simulations of Protein Aggregation in the Cellular Milieu

Shea, Joan-Emma

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 41 KB

english, 2010

53

Assisted Peptide Folding by Surface Pattern Recognition

Zhuang, Zhuoyun, Jewett, Andrew I., Kuttimalai, Silvan, Bellesia, Giovanni, Gnanakaran, S., Shea, Joan-Emma

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 1.34 MB

english, 2011

54

Resveratrol Inhibits the Formation of Multiple-Layered β-Sheet Oligomers of the Human Islet Amyloid Polypeptide Segment 22–27

Jiang, Ping, Li, Weifeng, Shea, Joan-Emma, Mu, Yuguang

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 1000 KB

english, 2011

55

Correction

Jiang, Ping, Li, Weifeng, Shea, Joan-Emma, Mu, Yuguang

Journal:

Biophysical Journal

Year:

2011

File:

PDF, 23 KB

2011

56

Role of β-Hairpin Formation in Aggregation: The Self-Assembly of the Amyloid-β(25–35) Peptide

Larini, Luca, Shea, Joan-Emma

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 583 KB

english, 2012

57

The Right Angle (RA) Motif: A Prevalent Ribosomal RNA Structural Pattern Found in Group I Introns

Wade W. Grabow, Zhuoyun Zhuang, Zoe N. Swank, Joan-Emma Shea, Luc Jaeger

Journal:

Journal of Molecular Biology

Year:

2012

Language:

english

File:

PDF, 1.12 MB

english, 2012

58

Effects of Solvent on the Structure of the Alzheimer Amyloid-β(25–35) Peptide

Wei, Guanghong, Shea, Joan-Emma

Journal:

Biophysical Journal

Year:

2006

Language:

english

File:

PDF, 331 KB

english, 2006

59

New Insights into the Mechanism of Alzheimer Amyloid-β Fibrillogenesis Inhibition by N-Methylated Peptides

Soto, Patricia, Griffin, Mary A., Shea, Joan-Emma

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 864 KB

english, 2007

60

Human Islet Amyloid Polypeptide Monomers Form Ordered β-hairpins: A Possible Direct Amyloidogenic Precursor

Dupuis, Nicholas F., Wu, Chun, Shea, Joan-Emma, Bowers, Michael T.

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 4.01 MB

english, 2009

61

The GA-minor submotif as a case study of RNA modularity, prediction, and design

Grabow, Wade W., Zhuang, Zhuoyun, Shea, Joan-Emma, Jaeger, Luc

Journal:

Wiley Interdisciplinary Reviews: RNA

Year:

2013

Language:

english

File:

PDF, 1.34 MB

english, 2013

62

Kinetic pathways to peptide aggregation on surfaces: The effects of β-sheet propensity and surface attraction

Morriss-Andrews, Alex, Shea, Joan-Emma

Journal:

The Journal of Chemical Physics

Year:

2012

Language:

english

File:

PDF, 2.59 MB

english, 2012

63

Initiation of assembly of tau(273-284) and its ΔK280 mutant: an experimental and computational study

Larini, Luca, Gessel, Megan Murray, LaPointe, Nichole E., Do, Thanh D., Bowers, Michael T., Feinstein, Stuart C., Shea, Joan-Emma

Journal:

Physical Chemistry Chemical Physics

Year:

2013

Language:

english

File:

PDF, 3.74 MB

english, 2013

64

Structural diversity of dimers of the Alzheimer amyloid-β(25–35) peptide and polymorphism of the resulting fibrils

Wei, Guanghong, Jewett, Andrew I., Shea, Joan-Emma

Journal:

Physical Chemistry Chemical Physics

Year:

2010

Language:

english

File:

PDF, 1.78 MB

english, 2010

65

Reaction coordinates, one-dimensional Smoluchowski equations, and a test for dynamical self-consistency

Peters, Baron, Bolhuis, Peter G., Mullen, Ryan G., Shea, Joan-Emma

Journal:

The Journal of Chemical Physics

Year:

2013

Language:

english

File:

PDF, 1.65 MB

english, 2013

66

Role of Water in Mediating the Assembly of Alzheimer Amyloid-β Aβ16−22 Protofilaments

Krone, Mary Griffin, Hua, Lan, Soto, Patricia, Zhou, Ruhong, Berne, B. J., Shea, Joan-Emma

Journal:

Journal of the American Chemical Society

Year:

2008

Language:

english

File:

PDF, 1.38 MB

english, 2008

67

Elucidating Amyloid β-Protein Folding and Assembly: A Multidisciplinary Approach

Teplow, David B., Lazo, Noel D., Bitan, Gal, Bernstein, Summer, Wyttenbach, Thomas, Bowers, Michael T., Baumketner, Andrij, Shea, Joan-Emma, Urbanc, Brigita, Cruz, Luis, Borreguero, Jose, Stanley, H.

Journal:

Accounts of Chemical Research

Year:

2006

Language:

english

File:

PDF, 494 KB

english, 2006

68

Aβ(39–42) Modulates Aβ Oligomerization but Not Fibril Formation

Gessel, Megan Murray, Wu, Chun, Li, Huiyuan, Bitan, Gal, Shea, Joan-Emma, Bowers, Michael T.

Journal:

Year:

2012

Language:

english

File:

PDF, 4.14 MB

english, 2012

69

The Influence of Different Treatments of Electrostatic Interactions on the Thermodynamics of Folding of Peptides †

Baumketner, Andrij, Shea, Joan-Emma

Journal:

Journal of Physical Chemistry B

Year:

2005

Language:

english

File:

PDF, 353 KB

english, 2005

70

Self-assembly of β-sheet forming peptides into chiral fibrillar aggregates

Bellesia, Giovanni, Shea, Joan-Emma

Journal:

The Journal of Chemical Physics

Year:

2007

Language:

english

File:

PDF, 2.22 MB

english, 2007

71

Double Resolution Model for Studying TMAO/Water Effective Interactions

Larini, Luca, Shea, Joan-Emma

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 344 KB

english, 2013

72

An investigation of the mathematical literacy of first year third-level students in the Republic of Ireland

Breen, Sinead, Cleary, Joan, O'Shea, Ann

Journal:

International Journal of Mathematical Education

Year:

2009

Language:

english

File:

PDF, 809 KB

english, 2009

73

The Amyloid Formation Mechanism in Human IAPP: Dimers Have β-Strand Monomer−Monomer Interfaces

Dupuis, Nicholas F., Wu, Chun, Shea, Joan-Emma, Bowers, Michael T.

Journal:

Journal of the American Chemical Society

Year:

2011

Language:

english

File:

PDF, 2.38 MB

english, 2011

74

Amyloid β-Protein: Monomer Structure and Early Aggregation States of Aβ42 and Its Pro 19 Alloform

Bernstein, Summer L., Wyttenbach, Thomas, Baumketner, Andrij, Shea, Joan-Emma, Bitan, Gal, Teplow, David B., Bowers, Michael T.

Journal:

Journal of the American Chemical Society

Year:

2005

Language:

english

File:

PDF, 178 KB

english, 2005

75

Effects of pH and Charge State on Peptide Assembly: The YVIFL Model System

Do, Thanh D., LaPointe, Nichole E., Economou, Nicholas J., Buratto, Steven K., Feinstein, Stuart C., Shea, Joan-Emma, Bowers, Michael T.

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 1.74 MB

english, 2013

76

Effect of β-sheet propensity on peptide aggregation

Bellesia, Giovanni, Shea, Joan-Emma

Journal:

The Journal of Chemical Physics

Year:

2009

Language:

english

File:

PDF, 1.76 MB

english, 2009

77

Simulations Pave the Way for Exploring New Frontiers in the Biological Sciences

Shea, Joan-Emma

Journal:

The Journal of Physical Chemistry Letters

Year:

2014

Language:

english

File:

PDF, 153 KB

english, 2014

78

Simulations of Protein Aggregation: Insights from Atomistic and Coarse-Grained Models

Morriss-Andrews, Alex, Shea, Joan-Emma

Journal:

The Journal of Physical Chemistry Letters

Year:

2014

Language:

english

File:

PDF, 5.27 MB

english, 2014

79

Moltemplate a Coarse-Grained Model Assembly Tool

Jewett, Andrew I., Zhuang, Zhuoyun, Shea, Joan-Emma

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 102 KB

english, 2013

80

Tau(273-284): A Molecular Dynamics Study of Intrinsically Disordered Protein Conformations in the Presence of Osmolytes

Levine, Zachary A., Larini, Luca, Shea, Joan-Emma

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 38 KB

english, 2014

81

OPHTHALMOLOGY. FRIDAY, AUGUST 2ND

Shea, Joan-Emma

Journal:

Year:

1901

Language:

english

File:

PDF, 415 KB

english, 1901

82

Simulations of Protein Aggregation

Shea, Joan-Emma

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 31 KB

english, 2013

83

Sustainable Childhood Obesity Prevention Through Community Engagement (SCOPE): Development of a Social Media Resource for Communities

Shea, Stephanie, McIntosh, Bonnie, Daly, Amelia, Collet, Jean Paul, Higgins, Joan Wharf, Amed, Shazhan

Journal:

Canadian Journal of Diabetes

Year:

2013

Language:

english

File:

PDF, 56 KB

english, 2013

84

Coarse-Grained Simulations of Peptide Aggregation on Surfaces

Morriss-Andrews, Alex, Shea, Joan-Emma

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 45 KB

english, 2014

85

The effect of daclizumab on brain atrophy in relapsing-remitting multiple sclerosis

Borges, Isabela T., Shea, Colin D., Ohayon, Joan, Jones, Blake C., Stone, Roger D., Ostuni, John, Shiee, Navid, McFarland, Henry, Bielekova, Bibiana, Reich, Daniel S.

Journal:

Multiple Sclerosis and Related Disorders

Year:

2013

Language:

english

File:

PDF, 715 KB

english, 2013

86

Exploring the Origins of Topological Frustration: Design of a Minimally Frustrated Model of Fragment B of Protein A

Joan-Emma Shea, José N. Onuchic and Charles L. Brooks III

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.08 MB

english, 1999

87

Why Did You Accept My Paper?

Kamat, Prashant V., Prezhdo, Oleg, Shea, Joan-Emma, Scholes, Gregory, Zaera, Francisco, Zwier, Timothy, Schatz, George C.

Journal:

The Journal of Physical Chemistry Letters

Year:

2014

Language:

english

File:

PDF, 138 KB

english, 2014

88

A Coarse-Grained Model for Peptide Aggregation on a Membrane Surface

Morriss-Andrews, Alex, Brown, Frank L. H., Shea, Joan-Emma

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 4.64 MB

english, 2014

89

Energetics of Infinite Homopolypeptide Chains: A New Look at Commonly Used Force Fields

Penev, Evgeni, Ireta, Joel, Shea, Joan-Emma

Journal:

Journal of Physical Chemistry B

Year:

2008

Language:

english

File:

PDF, 1.27 MB

english, 2008

90

Oligomers of the Prion Protein Fragment 106−126 Are Likely Assembled from β-Hairpins in Solution, and Methionine Oxidation Inhibits Assembly without Altering the Peptide’s Monomeric Conformation

Grabenauer, Megan, Wu, Chun, Soto, Patricia, Shea, Joan-Emma, Bowers, Michael T.

Journal:

Journal of the American Chemical Society

Year:

2010

Language:

english

File:

PDF, 991 KB

english, 2010

91

Determination of Biomembrane Bending Moduli in Fully Atomistic Simulations

Levine, Zachary A., Venable, Richard M., Watson, Max C., Lerner, Michael G., Shea, Joan-Emma, Pastor, Richard W., Brown, Frank L. H.

Journal:

Journal of the American Chemical Society

Year:

2014

Language:

english

File:

PDF, 1.08 MB

english, 2014

92

Defining the Molecular Basis of Amyloid Inhibitors: Human Islet Amyloid Polypeptide–Insulin Interactions

Susa, Anna C., Wu, Chun, Bernstein, Summer L., Dupuis, Nicholas F., Wang, Hui, Raleigh, Daniel P., Shea, Joan-Emma, Bowers, Michael T.

Journal:

Journal of the American Chemical Society

Year:

2014

Language:

english

File:

PDF, 3.43 MB

english, 2014

93

Amyloid β-Protein: Experiment and Theory on the 21−30 Fragment

Murray, Megan M., Krone, Mary Griffin, Bernstein, Summer L., Baumketner, Andrij, Condron, Margaret M., Lazo, Noel D., Teplow, David B., Wyttenbach, Thomas, Shea, Joan-Emma, Bowers, Michael T.

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 534 KB

english, 2009

94

Transmission Coefficients, Committors, and Solvent Coordinates in Ion-Pair Dissociation

Mullen, Ryan Gotchy, Shea, Joan-Emma, Peters, Baron

Journal:

Journal of Chemical Theory and Computation

Year:

2014

Language:

english

File:

PDF, 1.40 MB

english, 2014

95

Interactions between Amyloid-β and Tau Fragments Promote Aberrant Aggregates: Implications for Amyloid Toxicity

Do, Thanh D., Economou, Nicholas J., Chamas, Ali, Buratto, Steven K., Shea, Joan-Emma, Bowers, Michael T.

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 5.63 MB

english, 2014

96

Folding of the 25 Residue Aβ(12−36) Peptide in TFE/Water: Temperature-Dependent Transition from a Funneled Free-Energy Landscape to a Rugged One

Kamiya, Narutoshi, Mitomo, Daisuke, Shea, Joan-Emma, Higo, Junichi

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 389 KB

english, 2007

97

A hybrid MD-kMC algorithm for folding proteins in explicit solvent

Peter, Emanuel Karl, Shea, Joan-Emma

Journal:

Physical Chemistry Chemical Physics

Year:

2014

Language:

english

File:

PDF, 2.13 MB

english, 2014

98

Ion Mobility Spectrometry Reveals the Mechanism of Amyloid Formation of Aβ(25–35) and Its Modulation by Inhibitors at the Molecular Level: Epigallocatechin Gallate and Scyllo -inositol

Bleiholder, Christian, Do, Thanh D., Wu, Chun, Economou, Nicholas J., Bernstein, Summer S., Buratto, Steven K., Shea, Joan-Emma, Bowers, Michael T.

Journal:

Journal of the American Chemical Society

Year:

2013

Language:

english

File:

PDF, 1.80 MB

english, 2013

99

The Linker between the Dimerization and Catalytic Domains of the CheA Histidine Kinase Propagates Changes in Structure and Dynamics That Are Important for Enzymatic Activity

Wang, Xiqing, Vallurupalli, Pramodh, Vu, Anh, Lee, Kwangwoon, Sun, Sheng, Bai, Wen-Ju, Wu, Chun, Zhou, Hongjun, Shea, Joan-Emma, Kay, Lewis E., Dahlquist, Frederick W.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.52 MB

english, 2014

100

Coarse-Grained Modeling of Simple Molecules at Different Resolutions in the Absence of Good Sampling

Larini, Luca, Shea, Joan-Emma

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 1.41 MB

english, 2012