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51

Analytic results for finite systems of ringed flory polymers

Spouge, John L.

Journal:

Canadian Journal of Chemistry

Year:

1984

Language:

english

File:

PDF, 181 KB

english, 1984

52

Single-particle survival in gated trapping

Spouge, John L., Szabo, Atilla, Weiss, George H.

Journal:

Physical Review E

Year:

1996

Language:

english

File:

PDF, 196 KB

english, 1996

53

Exact Solutions for a Diffusion-Reaction Process in One Dimension

Spouge, John L.

Journal:

Physical Review Letters

Year:

1988

Language:

english

File:

PDF, 123 KB

english, 1988

54

Single-particle survival in parallel gated trapping

Spouge, John L.

Journal:

Physical Review E

Year:

1997

Language:

english

File:

PDF, 121 KB

english, 1997

55

Objective method for estimating asymptotic parameters, with an application to sequence alignment

Sheetlin, Sergey, Park, Yonil, Spouge, John L.

Journal:

Physical Review E

Year:

2011

Language:

english

File:

PDF, 390 KB

english, 2011

56

Risk assessment of BSE infectivity in the environment from rendering of over thirty month scheme cattle

Comer, Philip J, Spouge, John R, Stearn, Stuart

Journal:

Journal of Risk Research

Year:

1998

Language:

english

File:

PDF, 440 KB

english, 1998

57

Fungi in Thailand: A Case Study of the Efficacy of an ITS Barcode for Automatically Identifying Species within the Annulohypoxylon and Hypoxylon Genera

Suwannasai, Nuttika, Martín, María P., Phosri, Cherdchai, Sihanonth, Prakitsin, Whalley, Anthony J. S., Spouge, John L., Yun, Sung-Hwan

Journal:

Year:

2013

Language:

english

File:

PDF, 535 KB

english, 2013

58

An existence theorem for the discrete coagulation-fragmentation equations

Spouge, John L.

Journal:

Mathematical Proceedings of the Cambridge Philosophical Society

Year:

1984

Language:

english

File:

PDF, 524 KB

english, 1984

59

On a Model for the Structure of Circular Mitochondrial Genomes in Higher Plants

PERELSON, ALAN S., SEGEL, LEE A., SPOUGE, JOHN L.

Journal:

Mathematical Medicine and Biology

Year:

1985

Language:

english

File:

PDF, 663 KB

english, 1985

60

Searching for Multiple Words in a Markov Sequence

Park, Yonil, Spouge, John L.

Journal:

INFORMS Journal on Computing

Year:

2004

Language:

english

File:

PDF, 125 KB

english, 2004

61

Improving Retrieval Efficacy of Homology Searches Using the False Discovery Rate

Carroll, Hyrum D., Williams, Alex C., Davis, Anthony G., Spouge, John L.

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 563 KB

english, 2015

62

Fast optimal alignment

Spouge, John L.

Journal:

Year:

1991

Language:

english

File:

PDF, 2.17 MB

english, 1991

63

Conserved Molecular Signatures in gp120 Are Associated with the Genetic Bottleneck during Simian Immunodeficiency Virus (SIV), SIV-Human Immunodeficiency Virus (SHIV), and HIV Type 1 (HIV-1) Transmission

Gonzalez, Mileidy W., DeVico, Anthony L., Lewis, George K., Spouge, John L., Silvestri, G.

Journal:

Journal of Virology

Year:

2015

Language:

english

File:

PDF, 1.37 MB

english, 2015

64

ALP & FALP: C++ libraries for pairwise local alignment E -values

Sheetlin, Sergey, Park, Yonil, Frith, Martin C., Spouge, John L.

Journal:

Year:

2015

Language:

english

File:

PDF, 78 KB

english, 2015

65

Finite-Size Corrections to Poisson Approximations of Rare Events in Renewal Processes

Journal:

Journal of Applied Probability

Year:

2001

Language:

english

File:

PDF, 1.52 MB

english, 2001

66

Statistical Analysis of Sparse Infection Data and its Implications for Retroviral Treatment Trials in Primates

Journal:

Proceedings of the National Academy of Sciences

Year:

1992

Language:

english

File:

PDF, 1.27 MB

english, 1992

67

Markov Additive Processes and Repeats in Sequences

Journal:

Journal of Applied Probability

Year:

2007

Language:

english

File:

PDF, 1.08 MB

english, 2007

68

ESTIMATING THE GUMBEL SCALE PARAMETER FOR LOCAL ALIGNMENT OF RANDOM SEQUENCES BY IMPORTANCE SAMPLING WITH STOPPING TIMES

Yonil Park, Sergey Sheetlin and John L. Spouge

Journal:

The Annals of Statistics

Year:

2009

Language:

english

File:

PDF, 1.59 MB

english, 2009

69

Path Reversal, Islands, and the Gapped Alignment of Random Sequences

Journal:

Journal of Applied Probability

Year:

2004

Language:

english

File:

PDF, 388 KB

english, 2004

70

Searching for repeats, as an example of using the generalised Ruzzo-Tompa algorithm to find optimal subsequences with gaps

Spouge, John L., Ramírez, Leonardo Mariño, Sheetlin, Sergey L.

Journal:

International Journal of Bioinformatics Research and Applications

Year:

2014

Language:

english

File:

PDF, 833 KB

english, 2014

71

An existence theorem for the discrete coagulation–fragmentation equations

Spouge, John L.

Journal:

Mathematical Proceedings of the Cambridge Philosophical Society

Year:

1985

Language:

english

File:

PDF, 166 KB

english, 1985

72

NEXT-peak: a normal-exponential two-peak model for peak-calling in ChIP-seq data

Kim, Nak-Kyeong, Jayatillake, Rasika V, Spouge, John L

Journal:

Year:

2013

Language:

english

File:

PDF, 1.07 MB

english, 2013

73

[Society of Petroleum Engineers SPE Health, Safety and Environment in Oil and Gas Exploration and Production Conference - Jakarta, Indonesia (1994-01-25)] SPE Health, Safety and Environment in Oil and Gas Exploration and Production Conference - Helicopters or Boats - Risk Management Options For Transport Offshore

Lewis, Keith, Spouge, John

Language:

english

File:

PDF, 573 KB

english

74

Panacinar Emphysema

Spouge, David, Mayo, John R., Cardoso, Wellington, Müller, Nestor L.

Journal:

Journal of Computer Assisted Tomography

Year:

1993

File:

PDF, 292 KB

1993

75

[Society of Petroleum Engineers SPE Health, Safety and Environment in Oil and Gas Exploration and Production Conference - (1994.01.25-1994.01.27)] Proceedings of SPE Health, Safety and Environment in Oil and Gas Exploration and Production Conference - Helicopters or Boats - Risk Management Options For Transport Offshore

Lewis, Keith, Spouge, John

Year:

1994

Language:

english

File:

PDF, 573 KB

english, 1994

76

Path reversal, islands, and the gapped alignment of random sequences

Spouge, John L.

Journal:

Journal of Applied Probability

Year:

2004

Language:

english

File:

PDF, 135 KB

english, 2004

77

Estimating the Gumbel scale parameter for local alignment of random sequences by importance sampling with stopping times

Park, Yonil, Sheetlin, Sergey, Spouge, John L.

Journal:

The Annals of Statistics

Year:

2009

Language:

english

File:

PDF, 318 KB

english, 2009

78

Conserved signatures indicate HIV-1 transmission is under strong selection and thus is not a “stochastic” process

Gonzalez, Mileidy, DeVico, Anthony L., Spouge, John L.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.12 MB

english, 2017

79

Markov additive processes and repeats in sequences

Spouge, John L.

Journal:

Journal of Applied Probability

Year:

2007

Language:

english

File:

PDF, 222 KB

english, 2007

80

[North-Holland Mathematics Studies] Random Graphs '83, Based on lectures presented at the 1st Poznań Seminar on Random Graphs Volume 118 || Random Graph Problems in Polymer Chemistry

Spouge, John L.

Year:

1985

Language:

english

File:

PDF, 545 KB

english, 1985

81

Empirical null estimation using zero-inflated discrete mixture distributions and its application to protein domain data

Gauran, Iris Ivy M., Park, Junyong, Lim, Johan, Park, DoHwan, Zylstra, John, Peterson, Thomas, Kann, Maricel, Spouge, John L.

Journal:

Year:

2017

Language:

english

File:

PDF, 553 KB

english, 2017

82

Patterns of conserved gp120 epitope presentation on attached HIV-1 virions

Mengistu, Meron, Tang, Ai-hui, Foulke, James S., Blanpied, Thomas A., Gonzalez, Mileidy W., Spouge, John L., Gallo, Robert C., Lewis, George K., DeVico, Anthony L.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.52 MB

english, 2017

83

Finite-size corrections to Poisson approximations of rare events in renewal processes

Spouge, John L.

Journal:

Journal of Applied Probability

Year:

2001

Language:

english

File:

PDF, 177 KB

english, 2001

84

Discovery of Kaposi’s sarcoma herpesvirus-encoded circular RNAs and a human antiviral circular RNA

Tagawa, Takanobu, Gao, Shaojian, Koparde, Vishal N., Gonzalez, Mileidy, Spouge, John L., Serquiña, Anna P., Lurain, Kathryn, Ramaswami, Ramya, Uldrick, Thomas S., Yarchoan, Robert, Ziegelbauer, Joseph

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.16 MB

english, 2018

85

Alignment-free genome comparison enables accurate geographic sourcing of white oak DNA

Tang, Kujin, Ren, Jie, Cronn, Richard, Erickson, David L., Milligan, Brook G., Parker-Forney, Meaghan, Spouge, John L., Sun, Fengzhu

Journal:

Year:

2018

File:

PDF, 2.36 MB

2018

86

MultiDomainBenchmark: a multi-domain query and subject database suite

Carroll, Hyrum D., Spouge, John L., Gonzalez, Mileidy

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 1.21 MB

english, 2019

87

Alignment-free genome comparison enables accurate geographic sourcing of white oak DNA

Tang, Kujin, Ren, Jie, Cronn, Richard, Erickson, David L., Milligan, Brook G., Parker-Forney, Meaghan, Spouge, John L., Sun, Fengzhu

Journal:

Year:

2018

Language:

english

File:

PDF, 2.36 MB

english, 2018

88

An accurate approximation for the expected site frequency spectrum in a Galton–Watson process under an infinite sites mutation model

Spouge, John L.

Journal:

Theoretical Population Biology

Year:

2019

Language:

english

File:

PDF, 1.03 MB

english, 2019

89

DNA barcoding in land plants: developing standards to quantify and maximize success

Erickson, David L., Spouge, John, Resch, Alissa, Weigt, Lee A., Kress, John W.

Journal:

Year:

2008

Language:

english

File:

PDF, 615 KB

english, 2008

90

A branching-process solution of the polydisperse coagulation equation

Spouge, John L.

Journal:

Advances in Applied Probability

Year:

1984

Language:

english

File:

PDF, 1.19 MB

english, 1984

91

Markov Additive Processes and Repeats in Sequences

Spouge, John L.

Journal:

Journal of Applied Probability

Year:

2007

Language:

english

File:

PDF, 227 KB

english, 2007

92

Markov Additive Processes and Repeats in Sequences

Spouge, John L.

Journal:

Journal of Applied Probability

Year:

2007

File:

PDF, 227 KB

2007

93

Estimating the basic reproduction number of a pathogen in a single host when only a single founder successfully infects

Patel, Vruj, Spouge, John L., Souza, Max O.

Journal:

Year:

2020

Language:

english

File:

PDF, 1.18 MB

english, 2020

94

Figures of merit and statistics for detecting faulty species identification with DNA barcodes: A case study in Ramaria and related fungal genera

MartÃn, MarÃa P., DaniÃ«ls, Pablo P., Erickson, David, Spouge, John L., Kalendar, Ruslan

Journal:

Year:

2020

File:

PDF, 3.27 MB

2020

95

A linear-time algorithm that avoids inverses and computes Jackknife (leave-one-out) products like convolutions or other operators in commutative semigroups

Spouge, John L., Ziegelbauer, Joseph M., Gonzalez, Mileidy

Journal:

Algorithms for Molecular Biology

Year:

2020

File:

PDF, 1.89 MB

2020