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1

Systems Theoretic Analysis of the Central Dogma of Molecular Biology: Some Recent Results

Rui Gao, Juanyi Yu, Mingjun Zhang, Tzyh-Jong Tarn, Jr-Shin Li

Journal:

IEEE Transactions on NanoBioscience

Year:

2010

Language:

english

File:

PDF, 541 KB

english, 2010

2

Control and Synchronization of Neuron Ensembles

Li, Jr-Shin, Dasanayake, Isuru, Ruths, Justin

Journal:

IEEE Transactions on Automatic Control

Year:

2013

Language:

english

File:

PDF, 3.18 MB

english, 2013

3

Potential and optimal control of human head movement using Tait–Bryan parametrization

Wijayasinghe, Indika, Ruths, Justin, Büttner, Ulrich, Ghosh, Bijoy K., Glasauer, Stefan, Kremmyda, Olympia, Li, Jr-Shin

Journal:

Year:

2014

Language:

english

File:

PDF, 1.98 MB

english, 2014

4

Minimum-Time Quantum Transport With Bounded Trap Velocity

Stefanatos, Dionisis, Li, Jr-Shin

Journal:

IEEE Transactions on Automatic Control

Year:

2014

Language:

english

File:

PDF, 1.05 MB

english, 2014

5

Ensemble Control of Finite-Dimensional Time-Varying Linear Systems

Journal:

IEEE Transactions on Automatic Control

Year:

2011

Language:

english

File:

PDF, 856 KB

english, 2011

6

Optimal Subharmonic Entrainment of Weakly Forced Nonlinear Oscillators

Zlotnik, Anatoly, Li, Jr-Shin

Journal:

SIAM Journal on Applied Dynamical Systems

Year:

2014

Language:

english

File:

PDF, 2.00 MB

english, 2014

7

Constrained minimum-energy optimal control of the dissipative Bloch equations

Dionisis Stefanatos, Jr-Shin Li

Journal:

Systems & Control Letters

Year:

2010

Language:

english

File:

PDF, 651 KB

english, 2010

8

Sensitivity enhancement in NMR of macromolecules by application of optimal control theory

Dominique P. Frueh, Takuhiro Ito, Jr-Shin Li, Gerhard Wagner, Steffen J. Glaser, Navin Khaneja

Journal:

Journal of Biomolecular NMR

Year:

2005

Language:

english

File:

PDF, 1.39 MB

english, 2005

9

APPLICATION OF THE GENETIC ALGORITHM FOR OPTIMIZING OPERATION RULES OF THE LiYuTan RESERVOIR IN TAIWAN

Ching-pin Tung, Shao-yiu Hsu, Chia-Ming Liu, Jr-Shin Li

Journal:

JAWRA Journal of the American Water Resources Association

Year:

2003

Language:

english

File:

PDF, 220 KB

english, 2003

10

Minimum-Time Frictionless Atom Cooling in Harmonic Traps

Stefanatos, Dionisis, Schaettler, Heinz, Li, Jr-Shin

Journal:

SIAM Journal on Control and Optimization

Year:

2011

Language:

english

File:

PDF, 605 KB

english, 2011

11

Optimal Waveform for Fast Entrainment of Weakly Forced Nonlinear Oscillators

Zlotnik, Anatoly, Chen, Yifei, Kiss, István Z., Tanaka, Hisa-Aki, Li, Jr-Shin

Journal:

Physical Review Letters

Year:

2013

Language:

english

File:

PDF, 336 KB

english, 2013

12

A pseudospectral method for optimal control of open quantum systems

Li, Jr-Shin, Ruths, Justin, Stefanatos, Dionisis

Journal:

The Journal of Chemical Physics

Year:

2009

Language:

english

File:

PDF, 572 KB

english, 2009

13

[IEEE 2013 IEEE 52nd Annual Conference on Decision and Control (CDC) - Firenze (2013.12.10-2013.12.13)] 52nd IEEE Conference on Decision and Control - Ensemble controllability of time-invariant linear systems

Ji Qi,, Jr-Shin Li,

Year:

2013

Language:

english

File:

PDF, 330 KB

english, 2013

14

Optimal ensemble control of stochastic time-varying linear systems

Qi, Ji, Zlotnik, Anatoly, Li, Jr-Shin

Journal:

Systems & Control Letters

Year:

2013

Language:

english

File:

PDF, 762 KB

english, 2013

15

[IEEE 2012 IEEE 51st Annual Conference on Decision and Control (CDC) - Maui, HI, USA (2012.12.10-2012.12.13)] 2012 IEEE 51st IEEE Conference on Decision and Control (CDC) - Charge-balanced time-optimal control for spiking neuron oscillators

Dasanayake, Isuru, Li, Jr-Shin

Year:

2012

Language:

english

File:

PDF, 185 KB

english, 2012

16

[IEEE Proceedings of the 45th IEEE Conference on Decision and Control - San Diego, CA, USA (2006.12.13-2006.12.15)] Proceedings of the 45th IEEE Conference on Decision and Control - Ensemble Controllability of the Bloch Equations

Li, Jr-Shin, Khaneja, Navin

Year:

2006

Language:

english

File:

PDF, 5.78 MB

english, 2006

17

Control of inhomogeneous quantum ensembles

Li, Jr-Shin, Khaneja, Navin

Journal:

Physical Review A

Year:

2006

Language:

english

File:

PDF, 82 KB

english, 2006

18

[IEEE 2012 IEEE 51st Annual Conference on Decision and Control (CDC) - Maui, HI, USA (2012.12.10-2012.12.13)] 2012 IEEE 51st IEEE Conference on Decision and Control (CDC) - Time-optimal frictionless atom cooling in harmonic traps

Stefanatos, Dionisis, Schaettler, Heinz, Li, Jr-Shin

Year:

2012

Language:

english

File:

PDF, 461 KB

english, 2012

19

Constrained charge-balanced minimum-power controls for spiking neuron oscillators

Dasanayake, Isuru S., Li, Jr-Shin

Journal:

Systems & Control Letters

Year:

2015

Language:

english

File:

PDF, 796 KB

english, 2015

20

Frictionless decompression in minimum time of Bose-Einstein condensates in the Thomas-Fermi regime

Stefanatos, Dionisis, Li, Jr-Shin

Journal:

Physical Review A

Year:

2012

Language:

english

File:

PDF, 461 KB

english, 2012

21

Optimal trajectories for efficient atomic transport without final excitation

Chen, Xi, Torrontegui, E., Stefanatos, Dionisis, Li, Jr-Shin, Muga, J. G.

Journal:

Physical Review A

Year:

2011

Language:

english

File:

PDF, 594 KB

english, 2011

22

Frictionless atom cooling in harmonic traps: A time-optimal approach

Stefanatos, Dionisis, Ruths, Justin, Li, Jr-Shin

Journal:

Physical Review A

Year:

2010

Language:

english

File:

PDF, 560 KB

english, 2010

23

Optimal design of minimum-power stimuli for phase models of neuron oscillators

Dasanayake, Isuru, Li, Jr-Shin

Journal:

Physical Review E

Year:

2011

Language:

english

File:

PDF, 641 KB

english, 2011

24

Antiphase synchronization of phase-reduced oscillators using open-loop control

Stefanatos, Dionisis, Li, Jr-Shin

Journal:

Physical Review E

Year:

2012

Language:

english

File:

PDF, 196 KB

english, 2012

25

[IEEE 2012 American Control Conference - ACC 2012 - Montreal, QC (2012.6.27-2012.6.29)] 2012 American Control Conference (ACC) - Synthesis of optimal ensemble controls for linear systems using the singular value decomposition

Zlotnik, A., Jr-Shin Li,

Year:

2012

Language:

english

File:

PDF, 900 KB

english, 2012

26

[IEEE 2009 Joint 48th IEEE Conference on Decision and Control (CDC) and 28th Chinese Control Conference (CCC) - Shanghai, China (2009.12.15-2009.12.18)] Proceedings of the 48h IEEE Conference on Decision and Control (CDC) held jointly with 2009 28th Chinese Control Conference - A new perspective on control of uncertain complex systems

Year:

2009

Language:

english

File:

PDF, 453 KB

english, 2009

27

[IEEE 2010 49th IEEE Conference on Decision and Control (CDC) - Atlanta, GA, USA (2010.12.15-2010.12.17)] 49th IEEE Conference on Decision and Control (CDC) - Constrained Kalman filtering for IMRT optimization

Dasanayake, Isuru, El Naqa, Issam, Li, Jr-Shin

Year:

2010

Language:

english

File:

PDF, 253 KB

english, 2010

28

Optimal pulse design in quantum control: A unified computational method

Jr-Shin Li, Justin Ruths, Tsyr-Yan Yu, Haribabu Arthanari, Gerhard Wagner and Ann E. McDermott

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.25 MB

english, 2011

29

[IEEE 2012 IEEE 51st Annual Conference on Decision and Control (CDC) - Maui, HI, USA (2012.12.10-2012.12.13)] 2012 IEEE 51st IEEE Conference on Decision and Control (CDC) - Time-optimal adiabatic-like expansion of Bose-Einstein condensates

Stefanatos, Dionisis, Li, Jr-Shin

Year:

2012

Language:

english

File:

PDF, 239 KB

english, 2012

30

[IEEE 2009 American Control Conference - St. Louis, MO, USA (2009.06.10-2009.06.12)] 2009 American Control Conference - Real-time dynamic Pricing for multiproduct models with time-dependent customer arrival rates

Li, Jr-Shin, Chen, Shuo

Year:

2009

Language:

english

File:

PDF, 1.04 MB

english, 2009

31

[IEEE 2007 46th IEEE Conference on Decision and Control - New Orleans, LA, USA (2007.12.12-2007.12.14)] 2007 46th IEEE Conference on Decision and Control - Ensemble control of linear systems

Jr-Shin Li,, Navin Khaneja,

Year:

2007

Language:

english

File:

PDF, 325 KB

english, 2007

32

[IEEE 2011 50th IEEE Conference on Decision and Control and European Control Conference (CDC-ECC 2011) - Orlando, FL, USA (2011.12.12-2011.12.15)] IEEE Conference on Decision and Control and European Control Conference - Constrained minimum-power control of spiking neuron oscillators

Dasanayake, Isuru, Li, Jr-Shin

Year:

2011

Language:

english

File:

PDF, 301 KB

english, 2011

33

[IEEE 2013 IEEE 52nd Annual Conference on Decision and Control (CDC) - Firenze (2013.12.10-2013.12.13)] 52nd IEEE Conference on Decision and Control - Optimal control of neurons using the homotopy perturbation method

Dasanayake, Isuru, Zlotnik, Anatoly, Wei Zhang,, Jr-Shin Li,

Year:

2013

Language:

english

File:

PDF, 211 KB

english, 2013

34

[IEEE 2013 IEEE 52nd Annual Conference on Decision and Control (CDC) - Firenze (2013.12.10-2013.12.13)] 52nd IEEE Conference on Decision and Control - Optimal ensemble control of stochastic linear systems

Ji Qi,, Zlotnik, Anatoly, Jr-Shin Li,

Year:

2013

Language:

english

File:

PDF, 251 KB

english, 2013

35

[IEEE 2012 10th World Congress on Intelligent Control and Automation (WCICA 2012) - Beijing, China (2012.07.6-2012.07.8)] Proceedings of the 10th World Congress on Intelligent Control and Automation - Optimal control in molecular-level gene manipulation

Yu, Juanyi, Li, Jr-Shin

Year:

2012

Language:

english

File:

PDF, 171 KB

english, 2012

36

Optimal pulse design in quantum control: A unified computational method

Li, Jr-Shin, Ruths, Justin, Yu, Tsyr-Yan, Arthanari, Haribabu, Wagner, Gerhard

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 635 KB

english, 2011

37

Optimal entrainment of neural oscillator ensembles

Zlotnik, Anatoly, Li, Jr-Shin

Journal:

Journal of Neural Engineering

Year:

2012

Language:

english

File:

PDF, 160 KB

english, 2012

38

Optimal Control of Gene Mutation in DNA Replication

Yu, Juanyi, Li, Jr-Shin, Tarn, Tzyh-Jong

Journal:

Journal of Biomedicine and Biotechnology

Year:

2012

Language:

english

File:

PDF, 9.81 MB

english, 2012

39

Design of Charge-Balanced Time-Optimal Stimuli for Spiking Neuron Oscillators

Dasanayake, Isuru S., Li, Jr-Shin

Journal:

Neural Computation

Year:

2014

Language:

english

File:

PDF, 886 KB

english, 2014

40

A multidimensional pseudospectral method for optimal control of quantum ensembles

Ruths, Justin, Li, Jr-Shin

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 810 KB

english, 2011

41

Ensemble Control of Time-Invariant Linear Systems with Linear Parameter Variation

Li, Jr-Shin, Qi, Ji

Journal:

IEEE Transactions on Automatic Control

Year:

2015

Language:

english

File:

PDF, 1011 KB

english, 2015

42

[IEEE 2015 54th IEEE Conference on Decision and Control (CDC) - Osaka, Japan (2015.12.15-2015.12.18)] 2015 54th IEEE Conference on Decision and Control (CDC) - Fixed-endpoint minimum-energy control of bilinear ensemble systems

Wang, Shuo, Li, Jr-Shin

Year:

2015

Language:

english

File:

PDF, 252 KB

english, 2015

43

[IEEE 2015 American Control Conference (ACC) - Chicago, IL (2015.7.1-2015.7.3)] 2015 American Control Conference (ACC) - Minimum energy subharmonic synchronization of an uncertain nonlinear oscillator

Zlotnik, Anatoly, Li, Jr-Shin

Year:

2015

Language:

english

File:

PDF, 728 KB

english, 2015

44

Optimal Control and Stochastic Synchronization of Phase Oscillators**This work was supported by the National Science Foundation under the award 1301148.

Li, Jr-Shin, Zhang, Wei, Wang, Shuo

Journal:

IFAC-PapersOnLine

Year:

2015

Language:

english

File:

PDF, 611 KB

english, 2015

45

Control of a Network of Spiking Neurons *

Journal:

IFAC Proceedings Volumes

Year:

2010

Language:

english

File:

PDF, 318 KB

english, 2010

46

[IEEE 2015 54th IEEE Conference on Decision and Control (CDC) - Osaka, Japan (2015.12.15-2015.12.18)] 2015 54th IEEE Conference on Decision and Control (CDC) - Uniform and selective excitations of spin ensembles with rf inhomogeneity

Zhang, Wei, Li, Jr-Shin

Year:

2015

Language:

english

File:

PDF, 209 KB

english, 2015

47

Shortcuts to adiabaticity for an ion in a rotating radially-tight trap

Palmero, M, Wang, Shuo, Guéry-Odelin, D, Li, Jr-Shin, Muga, J G

Journal:

New Journal of Physics

Year:

2016

Language:

english

File:

PDF, 832 KB

english, 2016

48

[IEEE 2016 American Control Conference (ACC) - Boston, MA, USA (2016.7.6-2016.7.8)] 2016 American Control Conference (ACC) - On controllability of discrete-time linear ensemble systems with linear parameter variation

Tie, Lin, Li, Jr-Shin

Year:

2016

Language:

english

File:

PDF, 161 KB

english, 2016

49

[IEEE 2016 American Control Conference (ACC) - Boston, MA, USA (2016.7.6-2016.7.8)] 2016 American Control Conference (ACC) - An iterative method for computing optimal controls for bilinear quadratic tracking problems

Bomela, Walter, Li, Jr-Shin

Year:

2016

Language:

english

File:

PDF, 294 KB

english, 2016

50

Phase-selective entrainment of nonlinear oscillator ensembles

Zlotnik, Anatoly, Nagao, Raphael, Kiss, István Z., Li, Jr-Shin

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 2.21 MB

english, 2016