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101

Horizontally acquired AT-rich genes in Escherichia coli cause toxicity by sequestering RNA polymerase

Lamberte, Lisa E., Baniulyte, Gabriele, Singh, Shivani S., Stringer, Anne M., Bonocora, Richard P., Stracy, Mathew, Kapanidis, Achillefs N., Wade, Joseph T., Grainger, David C.

Journal:

Nature Microbiology

Year:

2017

Language:

english

File:

PDF, 1.39 MB

english, 2017

102

Tracking Low-Copy Transcription Factors in Living Bacteria: The Case of the lac Repressor

Garza de Leon, Federico, Sellars, Laura, Stracy, Mathew, Busby, Stephen J.W., Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 1.57 MB

english, 2017

103

Visualizing Protein-DNA Interactions in Live Bacterial Cells Using Photoactivated Single-molecule Tracking

Uphoff, Stephan, Sherratt, David J., Kapanidis, Achillefs N.

Journal:

Journal of Visualized Experiments

Year:

2014

Language:

english

File:

PDF, 7.47 MB

english, 2014

104

Single-Molecule Analysis of the Influenza Virus Replication Initiation Mechanism

Robb, Nicole C., te Velthuis, Aartjan J.W., Fodor, Ervin, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 40 KB

english, 2018

105

Rediscovering Bacteria through Single-Molecule Imaging in Living Cells

Kapanidis, Achillefs N., Lepore, Alessia, El Karoui, Meriem

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 1.58 MB

english, 2018

106

Understanding Protein Mobility in Bacteria by Tracking Single Molecules

Kapanidis, Achillefs N., Uphoff, Stephan, Stracy, Mathew

Journal:

Journal of Molecular Biology

Year:

2018

Language:

english

File:

PDF, 1.27 MB

english, 2018

107

Tracking tRNA packages

Kapanidis, Achillefs N., Stracy, Mathew

Journal:

Nature Chemical Biology

Year:

2018

Language:

english

File:

PDF, 746 KB

english, 2018

108

Conformational heterogeneity and bubble dynamics in single bacterial transcription initiation complexes

Duchi, Diego, Gryte, Kristofer, Robb, Nicole C, Morichaud, Zakia, Sheppard, Carol, Brodolin, Konstantin, Wigneshweraraj, Sivaramesh, Kapanidis, Achillefs N

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 4.79 MB

english, 2018

109

The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp

Duchi, Diego, Mazumder, Abhishek, Malinen, Anssi M, Ebright, Richard H, Kapanidis, Achillefs N

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 3.74 MB

english, 2018

110

DNA Polymerase Conformational Dynamics and the Role of Fidelity-Conferring Residues: Insights from Computational Simulations

Meli, Massimiliano, Sustarsic, Marko, Craggs, Timothy D., Kapanidis, Achillefs N., Colombo, Giorgio

Journal:

Frontiers in Molecular Biosciences

Year:

2016

Language:

english

File:

PDF, 3.08 MB

english, 2016

111

Short-Read Single-Molecule DNA Sequencing for Highly Parallel Analysis of Protein-DNA Interactions

Andrews, Rebecca, Steuer, Horst, Shivalingam, Arun, El-Sagheer, Afaf H., Brown, Tom, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 41 KB

english, 2018

112

Tracking antibiotic mechanisms

Pambos, Oliver J., Kapanidis, Achillefs N.

Journal:

Nature Reviews Microbiology

Year:

2019

Language:

english

File:

PDF, 339 KB

english, 2019

113

Real-time analysis of single influenza virus replication complexes reveals large promoter-dependent differences in initiation dynamics

Robb, Nicole C, te Velthuis, Aartjan J W, Fodor, Ervin, Kapanidis, Achillefs N

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 7.59 MB

english, 2019

114

Wide-Field Monitoring of Single Fluorescent Molecules and Nanoparticles without Immobilization

Gilboa, Barak, Jing, Bo, Sow, Maabur, Ju Cui, Tao, Plochowietz, Anne, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2018

File:

PDF, 43 KB

2018

115

Confinement-Free Wide-Field Ratiometric Tracking of Single Fluorescent Molecules

Gilboa, Barak, Jing, Bo, Cui, Tao J., Sow, Maabur, Plochowietz, Anne, Mazumder, Abhishek, Kapanidis, Achillefs N.

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 1.37 MB

english, 2019

116

Closing and opening of the RNA polymerase trigger loop

Mazumder, Abhishek, Lin, Miaoxin, Kapanidis, Achillefs N., Ebright, Richard H.

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 1.62 MB

2020

117

High-throughput nitrogen-vacancy center imaging for nanodiamond photophysical characterization and pH nanosensing

Sow, Maabur, Steuer, Horst, Adekanye, Sanmi, GinÃ©s, Laia, Mandal, Soumen, Gilboa, Barak, Williams, Oliver A., Smith, Jason M., Kapanidis, Achillefs N.

Journal:

Year:

2020

File:

PDF, 3.07 MB

2020