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51

Functional Characterization of BK Virus-Specific CD4 + T Cells with Cytotoxic Potential in Seropositive Adults

Zhou, Wendi, Sharma, Madeva, Martinez, Joy, Srivastava, Tumul, Diamond, Don J., Knowles, Wendy, Lacey, Simon F.

Journal:

Viral Immunology

Year:

2007

Language:

english

File:

PDF, 253 KB

english, 2007

52

Applying species-tree analyses to deep phylogenetic histories: Challenges and potential suggested from a survey of empirical phylogenetic studies

Lanier, Hayley C., Knowles, L. Lacey

Journal:

Molecular Phylogenetics and Evolution

Year:

2015

Language:

english

File:

PDF, 983 KB

english, 2015

53

MICROHABITAT DIFFERENCES IMPACT PHYLOGEOGRAPHIC CONCORDANCE OF CODISTRIBUTED SPECIES: GENOMIC EVIDENCE IN MONTANE SEDGES ( CAREX L.) FROM THE ROCKY MOUNTAINS

Massatti, Rob, Knowles, L. Lacey

Journal:

Year:

2014

Language:

english

File:

PDF, 784 KB

english, 2014

54

Bayesian species delimitation combining multiple genes and traits in a unified framework

Solís-Lemus, Claudia, Knowles, L. Lacey, Ané, Cécile

Journal:

Year:

2015

Language:

english

File:

PDF, 681 KB

english, 2015

55

Habitat corridors facilitate genetic resilience irrespective of species dispersal abilities or population sizes

Christie, Mark R., Knowles, L. Lacey

Journal:

Evolutionary Applications

Year:

2015

Language:

english

File:

PDF, 441 KB

english, 2015

56

Estimating phylogenetic relationships despite discordant gene trees across loci: the species tree of a diverse species group of feather mites (Acari: Proctophyllodidae)

KNOWLES, LACEY L., KLIMOV, PAVEL B.

Journal:

Year:

2011

Language:

english

File:

PDF, 338 KB

english, 2011

57

The mechanisms of morph determination in the amphipod Jassa: implications for the evolution of alternative male phenotypes

Kurdziel, J. P., Lacey Knowles, L.

Journal:

Proceedings Biological Sciences

Year:

2002

Language:

english

File:

PDF, 875 KB

english, 2002

58

EVIDENCE FOR OVERDOMINANT SELECTION MAINTAINING X-LINKED FITNESS VARIATION IN DROSOPHILA MELANOGASTER

Connallon, Tim, Knowles, L. Lacey

Journal:

Year:

2006

Language:

english

File:

PDF, 138 KB

english, 2006

59

Statistical phylogeography

Knowles, L. Lacey, Maddison, Wayne P.

Journal:

Molecular Ecology

Year:

2002

Language:

english

File:

PDF, 312 KB

english, 2002

60

Estimating Species Phylogeny from Gene-Tree Probabilities Despite Incomplete Lineage Sorting: An Example from Melanoplus Grasshoppers

Carstens, Bryan C., Knowles, L. Lacey

Journal:

Systematic Biology

Year:

2007

Language:

english

File:

PDF, 1.87 MB

english, 2007

61

TESTS OF PLEISTOCENE SPECIATION IN MONTANE GRASSHOPPERS (GENUS MELANOPLUS) FROM THE SKY ISLANDS OF WESTERN NORTH AMERICA

Knowles, L. Lacey

Journal:

Year:

2000

Language:

english

File:

PDF, 267 KB

english, 2000

62

Resolving Species Phylogenies of Recent Evolutionary Radiations

L. Lacey Knowles and Yat-Hei Chan

Journal:

Annals of the Missouri Botanical Garden

Year:

2008

Language:

english

File:

PDF, 1.52 MB

english, 2008

63

CALIBRATING DIVERGENCE TIMES ON SPECIES TREES VERSUS GENE TREES: IMPLICATIONS FOR SPECIATION HISTORY OF APHELOCOMA JAYS

John E. McCormack, Joseph Heled, Kathleen S. Delaney, A. Townsend Peterson and L. Lacey Knowles

Journal:

Year:

2011

Language:

english

File:

PDF, 3.80 MB

english, 2011

64

Estimating a Geographically Explicit Model of Population Divergence

L. Lacey Knowles and Bryan C. Carstens

Journal:

Year:

2007

Language:

english

File:

PDF, 2.73 MB

english, 2007

65

The species versus subspecies conundrum: quantitative delimitation from integrating multiple data types within a single Bayesian approach in Hercules beetles

Huang, Jen-Pan, Knowles, L. Lacey

Journal:

Systematic Biology

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

66

DOES NICHE DIVERGENCE ACCOMPANY ALLOPATRIC DIVERGENCE INAPHELOCOMAJAYS AS PREDICTED UNDER ECOLOGICAL SPECIATION?: INSIGHTS FROM TESTS WITH NICHE MODELS

John E. McCormack, Amanda J. Zellmer and L. Lacey Knowles

Journal:

Year:

2010

Language:

english

File:

PDF, 2.76 MB

english, 2010

67

Evidence for Overdominant Selection Maintaining X-Linked Fitness Variation in Drosophila melanogaster

Tim Connallon and L. Lacey Knowles

Journal:

Year:

2006

Language:

english

File:

PDF, 421 KB

english, 2006

68

Museum Specimens and Phylogenies Elucidate Ecology's Role in Coevolutionary Associations between Mites and Their Bee Hosts

Pavel B. Klimov, Barry M. OConnor and L. Lacey Knowles

Journal:

Year:

2007

Language:

english

File:

PDF, 1.83 MB

english, 2007

69

Quantifying the similarity between genes and geography across Alaska's alpine small mammals

Knowles, L. Lacey, Massatti, Rob, He, Qixin, Olson, Link E., Lanier, Hayley C.

Journal:

Journal of Biogeography

Year:

2016

Language:

english

File:

PDF, 1.39 MB

english, 2016

70

Testing the effect of palaeodrainages versus habitat stability on genetic divergence in riverine systems: study of a Neotropical fish of the Brazilian coastal Atlantic Forest

Thomaz, Andréa T., Malabarba, Luiz R., Bonatto, Sandro L., Knowles, L. Lacey

Journal:

Journal of Biogeography

Year:

2015

Language:

english

File:

PDF, 1.12 MB

english, 2015

71

Glacial refugia, recolonization patterns and diversification forces in Alpine-endemic Megabunus harvestmen

Wachter, Gregor A., Papadopoulou, Anna, Muster, Christoph, Arthofer, Wolfgang, Knowles, L. Lacey, Steiner, Florian M., Schlick-Steiner, Birgit C.

Journal:

Molecular Ecology

Year:

2016

Language:

english

File:

PDF, 1.81 MB

english, 2016

72

The architecture of river networks can drive the evolutionary dynamics of aquatic populations

Thomaz, Andréa T., Christie, Mark R., Knowles, L. Lacey

Journal:

Year:

2016

Language:

english

File:

PDF, 418 KB

english, 2016

73

Identifying targets of selection in mosaic genomes with machine learning: applications in Anopheles gambiae for detecting sites within locally adapted chromosomal inversions

He, Qixin, Knowles, L. Lacey

Journal:

Molecular Ecology

Year:

2016

Language:

english

File:

PDF, 1.90 MB

english, 2016

74

Colonization from divergent ancestors: glaciation signatures on contemporary patterns of genomic variation in Collared Pikas ( Ochotona collaris )

Lanier, Hayley C., Massatti, Rob, He, Qixin, Olson, Link E., Knowles, L. Lacey

Journal:

Molecular Ecology

Year:

2015

Language:

english

File:

PDF, 2.05 MB

english, 2015

75

Species-specific responses to island connectivity cycles: refined models for testing phylogeographic concordance across a Mediterranean Pleistocene Aggregate Island Complex

Papadopoulou, Anna, Knowles, L. Lacey

Journal:

Molecular Ecology

Year:

2015

Language:

english

File:

PDF, 1.07 MB

english, 2015

76

Contrasting support for alternative models of genomic variation based on microhabitat preference: species-specific effects of climate change in alpine sedges

Massatti, Rob, Knowles, L Lacey

Journal:

Molecular Ecology

Year:

2016

Language:

english

File:

PDF, 1.43 MB

english, 2016

77

Gene Trees versus Species Trees: Reassessing Life-History Evolution in a Freshwater Fish Radiation

Jonathan M. Waters, Diane L. Rowe, Christopher P. Burridge, Graham P. Wallis and Lacey Knowles

Journal:

Systematic Biology

Year:

2010

Language:

english

File:

PDF, 3.03 MB

english, 2010

78

Toward a paradigm shift in comparative phylogeography driven by trait-based hypotheses

Papadopoulou, Anna, Knowles, L. Lacey

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 884 KB

english, 2016

79

Inferring Phylogeny despite Incomplete Lineage Sorting

Wayne P. Maddison and L. Lacey Knowles

Journal:

Systematic Biology

Year:

2006

Language:

english

File:

PDF, 2.32 MB

english, 2006

80

Maximum Likelihood Estimates of Species Trees: How Accuracy of Phylogenetic Inference Depends upon the Divergence History and Sampling Design

John E. McCormack, Huateng Huang and L. Lacey Knowles

Journal:

Systematic Biology

Year:

2009

Language:

english

File:

PDF, 1.41 MB

english, 2009

81

What Is the Danger of the Anomaly Zone for Empirical Phylogenetics?

Huateng Huang and L. Lacey Knowles

Journal:

Systematic Biology

Year:

2009

Language:

english

File:

PDF, 2.25 MB

english, 2009

82

Tests of species-specific models reveal the importance of drought in postglacial range shifts of a Mediterranean-climate tree: insights from iDDC modelling and ABC model selection

Bemmels, Jordan B., Title, Pascal O., Ortego, Joaquín, Knowles, L. Lacey

Journal:

Molecular Ecology

Year:

2016

Language:

english

File:

PDF, 636 KB

english, 2016

83

Estimating Species Phylogeny from Gene-Tree Probabilities despite Incomplete Lineage Sorting: An Example from Melanoplus Grasshoppers

Bryan C. Carstens and L. Lacey Knowles

Journal:

Systematic Biology

Year:

2007

Language:

english

File:

PDF, 2.73 MB

english, 2007

84

Delimiting Species without Monophyletic Gene Trees

L. Lacey Knowles and Bryan C. Carstens

Journal:

Systematic Biology

Year:

2007

Language:

english

File:

PDF, 1.97 MB

english, 2007

85

Sources of Error Inherent in Species-Tree Estimation: Impact of Mutational and Coalescent Effects on Accuracy and Implications for Choosing among Different Methods

Huateng Huang, Qixin He, Laura S. Kubatko, L. Lacey Knowles and Robb Brumfield

Journal:

Systematic Biology

Year:

2010

Language:

english

File:

PDF, 1.79 MB

english, 2010

86

The Ice-Age History of Southwestern National Parks. Scott A. Elias

Knowles, L. Lacey

Journal:

Quarterly Review of Biology

Year:

1998

File:

PDF, 22 KB

1998

87

Evaluating Nested Clade Phylogeographic Analysis under Models of Restricted Gene Flow

Mahesh Panchal, Mark A. Beaumont and L. Lacey Knowles

Journal:

Systematic Biology

Year:

2010

Language:

english

File:

PDF, 3.28 MB

english, 2010

88

Estimating Species Trees: Methods of Phylogenetic Analysis When There Is Incongruence across Genes

L. Lacey Knowles

Journal:

Systematic Biology

Year:

2009

Language:

english

File:

PDF, 960 KB

english, 2009

89

Is Recombination a Problem for Species-Tree Analyses?

Hayley C. Lanier and L. Lacey Knowles

Journal:

Systematic Biology

Year:

2012

Language:

english

File:

PDF, 2.18 MB

english, 2012

90

Tests of Pleistocene Speciation in Montane Grasshoppers (Genus melanoplus) from the Sky Islands of Western North America

L. Lacey Knowles

Journal:

Year:

2000

Language:

english

File:

PDF, 1.76 MB

english, 2000

91

Mimics here and there, but not everywhere: Müllerian mimicry in Ceroglossus ground beetles?

Muñoz-Ramírez, Carlos P., Bitton, Pierre-Paul, Doucet, Stéphanie M., Knowles, Lacey L.

Journal:

Biology Letters

Year:

2016

Language:

english

File:

PDF, 623 KB

english, 2016

92

Distributional shifts - not geographic isolation - as a probable driver of montane species divergence

Knowles, L. Lacey, Massatti, Rob

Journal:

Year:

2017

Language:

english

File:

PDF, 556 KB

english, 2017

93

Tests of the Role of Sexual Selection in Genitalic Divergence with Mutiple Hybrid Clines

Knowles, L. Lacey, Chappell, Thomas M., Marquez, Eladio J., Cohn, Theodore J.

Journal:

Journal of Orthoptera Research

Year:

2016

Language:

english

File:

PDF, 392 KB

english, 2016

94

Multispecies coalescent delimits structure, not species

Sukumaran, Jeet, Knowles, L. Lacey

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 816 KB

english, 2017

95

TESTS OF INBREEDING EFFECTS ON HOST-SHIFT POTENTIAL IN THE PHYTOPHAGOUS BEETLE OPHRAELLA COMMUNA

Knowles, L. Lacey, Levy, André, McNellis, Jason M., Greene, Kimberly P., Futuyma, Douglas J.

Journal:

Year:

1999

Language:

english

File:

PDF, 690 KB

english, 1999

96

INSIGHT INTO SPECIATION FROM HISTORICAL DEMOGRAPHY IN THE PHYTOPHAGOUS BEETLE GENUS OPHRAELLA

Knowles, L. Lacey, Futuyma, Douglas J., Eanes, Walter F., Rannala, Bruce

Journal:

Year:

1999

Language:

english

File:

PDF, 1.11 MB

english, 1999

97

Inferring the geographic origin of a range expansion: latitudinal and longitudinal coordinates inferred from genomic data in an ABC framework with the program x - origin

He, Qixin, Prado, Joyce R., Knowles, L. Lacey

Journal:

Molecular Ecology

Year:

2017

Language:

english

File:

PDF, 999 KB

english, 2017

98

Linking micro- and macroevolutionary perspectives to evaluate the role of Quaternary sea-level oscillations in island diversification

Papadopoulou, Anna, Knowles, L. Lacey

Journal:

Year:

2017

Language:

english

File:

PDF, 979 KB

english, 2017

99

Integrative taxonomy of the lizards Cercosaura ocellata species complex (Reptilia: Gymnophthalmidae)

Sturaro, Marcelo José, Rodrigues, Miguel T., Colli, Guarino R., Knowles, L. Lacey, Avila-Pires, Teresa C.S.

Journal:

Zoologischer Anzeiger - A Journal of Comparative Zoology

Year:

2018

Language:

english

File:

PDF, 25.68 MB

english, 2018

100

Trait-Dependent Biogeography: (Re)Integrating Biology into Probabilistic Historical Biogeographical Models

Sukumaran, Jeet, Knowles, L. Lacey

Journal:

Trends in Ecology & Evolution

Year:

2018

Language:

english

File:

PDF, 1.28 MB

english, 2018