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51

Dynamo: A flexible, user-friendly development tool for subtomogram averaging of cryo-EM data in high-performance computing environments

Daniel Castaño-Díez, Mikhail Kudryashev, Marcel Arheit, Henning Stahlberg

Journal:

Journal of Structural Biology

Year:

2012

Language:

english

File:

PDF, 1.30 MB

english, 2012

52

Ionization and excitation of the upper atmosphere during solar flares

G.S. Kudryashev, S.V. Avakyan

Journal:

Physics and Chemistry of the Earth, Part C: Solar, Terrestrial & Planetary Science

Year:

2000

Language:

english

File:

PDF, 436 KB

english, 2000

53

Structural basis for chirality and directional motility of Plasmodium sporozoites

Mikhail Kudryashev, Sylvia Münter, Leandro Lemgruber, Georgina Montagna, Henning Stahlberg, Kai Matuschewski, Markus Meissner, Marek Cyrklaff, Friedrich Frischknecht

Journal:

Cellular Microbiology

Year:

2012

Language:

english

File:

PDF, 1.36 MB

english, 2012

54

Improving the quality of electron tomography image volumes using pre-reconstruction filtering

Mauro Maiorca, Eric Hanssen, Edmund Kazmierczak, Bohumil Maco, Misha Kudryashev, Richard Hall, Harry Quiney, Leann Tilley

Journal:

Journal of Structural Biology

Year:

2012

Language:

english

File:

PDF, 2.32 MB

english, 2012

55

Molecular assembly of the aerolysin pore reveals a swirling membrane-insertion mechanism

Degiacomi, Matteo T, Iacovache, Ioan, Pernot, Lucile, Chami, Mohamed, Kudryashev, Misha, Stahlberg, Henning, van der Goot, F Gisou, Dal Peraro, Matteo

Journal:

Nature Chemical Biology

Year:

2013

Language:

english

File:

PDF, 1.66 MB

english, 2013

56

Cryo-electron tomography reveals four-membrane architecture of thePlasmodiumapicoplast

Leandro Lemgruber, Mikhail Kudryashev, Chaitali Dekiwadia…

Journal:

Malaria Journal

Year:

2013

Language:

english

File:

PDF, 853 KB

english, 2013

57

Structure of the Dodecameric Yersinia enterocolitica Secretin YscC and Its Trypsin-Resistant Core

Kowal, Julia, Chami, Mohamed, Ringler, Philippe, Müller, Shirley A., Kudryashev, Mikhail, Castaño-Díez, Daniel, Amstutz, Marlise, Cornelis, Guy R., Stahlberg, Henning, Engel, Andreas

Journal:

Year:

2013

Language:

english

File:

PDF, 2.31 MB

english, 2013

58

Separation of Vanillin and Syringaldehyde Produced from Lignins

Tarabanko, V. E., Chelbina, Yu. V., Kudryashev, A. V., Tarabanko, N. V.

Journal:

Separation Science and Technology

Year:

2013

Language:

english

File:

PDF, 383 KB

english, 2013

59

Luminal Particles within Cellular Microtubules

Boyan K. Garvalov, Benoît Zuber , Cédric Bouchet-Marquis , Mikhail Kudryashev, Manuela Gruska, Martin Beck, Andrew Leis, Friedrich Frischknecht, Frank Bradke, Wolfgang Baumeister, Jacques Dubochet and

Journal:

The Journal of Cell Biology

Year:

2006

Language:

english

File:

PDF, 1.13 MB

english, 2006

60

The ultrastructure of Chlorobaculum tepidum revealed by cryo-electron tomography

Kudryashev, Misha, Aktoudianaki, Aikaterini, Dedoglou, Dimitrios, Stahlberg, Henning, Tsiotis, Georgios

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2014

Language:

english

File:

PDF, 2.80 MB

english, 2014

61

LIMITING FACTORS IN SINGLE PARTICLE CRYO ELECTRON TOMOGRAPHY

Kudryashev, Mikhail, Castaño-Díez, Daniel, Stahlberg, Henning

Journal:

Computational and Structural Biotechnology Journal

Year:

2012

Language:

english

File:

PDF, 1.80 MB

english, 2012

62

Performance of the high resolution fourier diffractometer at the IBR-2 pulsed reactor

Aksenov, V. L., Balagurov, A. M., Simkin, V. G., Bulkin, A. P., Kudryashev, V. A., Trounov, V. A., Antson, O., Hiismäki, P., Tiitta, A.

Journal:

Journal of Neutron Research

Year:

1997

Language:

english

File:

PDF, 55 KB

english, 1997

63

Electron tomography of Plasmodium falciparum merozoites reveals core cellular events that underpin erythrocyte invasion

Hanssen, Eric, Dekiwadia, Chaitali, Riglar, David T., Rug, Melanie, Lemgruber, Leandro, Cowman, Alan F., Cyrklaff, Marek, Kudryashev, Mikhail, Frischknecht, Friedrich, Baum, Jake, Ralph, Stuart A.

Journal:

Cellular Microbiology

Year:

2013

Language:

english

File:

PDF, 1.52 MB

english, 2013

64

Quasiclassical negative magnetoresistance of a two-dimensional electron gas in a random magnetic field

Bykov, A. A., Gusev, G. M., Leite, J. R., Bakarov, A. K., Goran, A. V., Kudryashev, V. M., Toropov, A. I.

Journal:

Physical Review B

Year:

2001

Language:

english

File:

PDF, 386 KB

english, 2001

65

Negative linear classical magnetoresistance in a corrugated two-dimensional electron gas

Sotomayor, N. M., Gusev, G. M., Leite, J. R., Bykov, A. A., Kalagin, A. K., Kudryashev, V. M., Toropov, A. I.

Journal:

Physical Review B

Year:

2004

Language:

english

File:

PDF, 283 KB

english, 2004

66

Single-particle relaxation time in a spatially fluctuating magnetic field

Gusev, G. M., Leite, J. R., Bykov, A. A., Moshegov, N. T., Kudryashev, V. M., Toropov, A. I., Nastaushev, Yu. V.

Journal:

Physical Review B

Year:

1999

Language:

english

File:

PDF, 429 KB

english, 1999

67

at 33, 45, and 60 MeV

Ryzhov, I. V., Yavshits, S. G., Tutin, G. A., Kovalev, N. V., Saulski, A. V., Kudryashev, N. A., Onegin, M. S., Vaishnene, L. A., Gavrikov, Yu. A., Grudzevich, O. T., Simutkin, V. D., Pomp, S., Blomgr

Journal:

Physical Review C

Year:

2011

Language:

english

File:

PDF, 1.21 MB

english, 2011

68

Clostridium difficile toxin CDT hijacks microtubule organization and reroutes vesicle traffic to increase pathogen adherence

Schwan, C., Kruppke, A. S., Nolke, T., Schumacher, L., Koch-Nolte, F., Kudryashev, M., Stahlberg, H., Aktories, K.

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 1.43 MB

english, 2014

69

Cryoelectron tomography reveals periodic material at the inner side of subpellicular microtubules in apicomplexan parasites

Cyrklaff, M., Kudryashev, M., Leis, A., Leonard, K., Baumeister, W., Menard, R., Meissner, M., Frischknecht, F.

Journal:

Journal of Experimental Medicine

Year:

2007

Language:

english

File:

PDF, 2.85 MB

english, 2007

70

Interaction of complexes I, III, and IV within the bovine respirasome by single particle cryoelectron tomography

Dudkina, N. V., Kudryashev, M., Stahlberg, H., Boekema, E. J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.89 MB

english, 2011

71

Key factors regulating Plasmodium berghei sporozoite survival and transformation revealed by an automated visual assay

Hegge, S., Kudryashev, M., Barniol, L., Frischknecht, F.

Journal:

The FASEB Journal

Year:

2010

Language:

english

File:

PDF, 537 KB

english, 2010

72

Development of the DN-12 Time to Flight Neutron Spectrometer for Investigation of Microsamples under High External Pressure

Aksenov, V.L., Balagurov, A.M., Glazkov, V.P., Kozlenko, D.P., Naumov, I.V., Savenko, B.N., Sheptyakov, D.V., Somenkov, V.A., Bulkin, A.P., Kudryashev, V.A., Trounov, V.A.

Journal:

Materials Science Forum

Year:

2000

File:

PDF, 390 KB

2000

73

Modification of RTOF-Devices for Investigation in Solid State Physics and Material Science

Hartung, U., Kreyßig, A., Kudryashev, V.A.

Journal:

Materials Science Forum

Year:

1994

File:

PDF, 378 KB

1994

74

Optimization of Reverse Time of Flight Neutron Scattering Devices

Kudryashev, V.A., Hartung, U., Priesmeyer, Hans Georg, Försterling, G.

Journal:

Materials Science Forum

Year:

1993

File:

PDF, 328 KB

1993

75

Environmental Constraints Guide Migration of Malaria Parasites during Transmission

Hellmann, Janina Kristin, Münter, Sylvia, Kudryashev, Mikhail, Schulz, Simon, Heiss, Kirsten, Müller, Ann-Kristin, Matuschewski, Kai, Spatz, Joachim P., Schwarz, Ulrich S., Frischknecht, Friedrich, Mo

Journal:

Year:

2011

Language:

english

File:

PDF, 1.16 MB

english, 2011

76

Composition, Formation, and Regulation of the Cytosolic C-ring, a Dynamic Component of the Type III Secretion Injectisome

Diepold, Andreas, Kudryashev, Mikhail, Delalez, Nicolas J., Berry, Richard M., Armitage, Judith P., Stock, Ann M.

Journal:

Year:

2015

Language:

english

File:

PDF, 1021 KB

english, 2015

77

Y ersinia enterocolitica type III secretion injectisomes form regularly spaced clusters, which incorporate new machines upon activation

Kudryashev, Mikhail, Diepold, Andreas, Amstutz, Marlise, Armitage, Judith P., Stahlberg, Henning, Cornelis, Guy R.

Journal:

Molecular Microbiology

Year:

2015

Language:

english

File:

PDF, 8.51 MB

english, 2015

78

NONLINEAR ASPECTS OF COOLING OF A STRONGLY ANISOTROPIC OPTICAL ELEMENT OF A LASER

Belostotskii, B R, Kudryashev, L I, Men'shikh, N L

Journal:

Soviet Journal of Quantum Electronics

Year:

1972

Language:

english

File:

PDF, 184 KB

english, 1972

79

Shubnikov-de Haas oscillations in a nonplanar two-dimensional electron gas

G. M. Gusev, A. A. Quivy, J. R. Leite, A. A. Bykov, N. T. Moshegov, V. M. Kudryashev, A. I. Toropov, Y. V. Nastaushev

Year:

1999

Language:

english

File:

PDF, 402 KB

english, 1999

80

Structure of a bacterial type III secretion system in contact with a host membrane in situ

Nans, Andrea, Kudryashev, Mikhail, Saibil, Helen R., Hayward, Richard D.

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 4.89 MB

english, 2015

81

The Structure of the Mouse Serotonin 5-HT3 Receptor in Lipid Vesicles

Kudryashev, Mikhail, Castaño-Díez, Daniel, Deluz, Cédric, Hassaine, Gherici, Grasso, Luigino, Graf-Meyer, Alexandra, Vogel, Horst, Stahlberg, Henning

Journal:

Year:

2016

Language:

english

File:

PDF, 2.07 MB

english, 2016

82

Interaction of complexes I, III, and IV within the bovine respirasome by single particle cryoelectron tomography

Natalya V. Dudkina, Mikhail Kudryashev, Henning Stahlberg and Egbert J. Boekema

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.40 MB

english, 2011

83

Recent progress in structure and dynamics of dual-membrane-spanning bacterial nanomachines

Gold, Vicki, Kudryashev, Mikhail

Journal:

Current Opinion in Structural Biology

Year:

2016

Language:

english

File:

PDF, 1.38 MB

english, 2016

84

Cryo-Electron Tomography of Malaria Parasites

Cyrklaff, M, Kudryashev, M, Kilian, N, Henrich, P, Frischknecht, F, Lanzer, M

Journal:

Microscopy and Microanalysis

Year:

2009

File:

PDF, 835 KB

2009

85

Cryo-Electron Tomography of Intact Cells

Cyrklaff, M, Sartori, A, Baumeister, W, Frischknecht, F, Kudryashev, M, Lepper, S, Garvalov, B, Bradke, F, Chlanda, P, Krijnse-Locker, J, Griffiths, G

Journal:

Microscopy and Microanalysis

Year:

2007

Language:

english

File:

PDF, 779 KB

english, 2007

86

Light Microscopy and Cryo-Electron Tomography of motile Malaria Parasites

Frischknecht, F, Kudryashev, M, Lepper, S, Münter, S, Hegge, S, Meissner, M, Sartori, A, Bohn, S, Baumeister, W, Cyrklaff, M

Journal:

Microscopy and Microanalysis

Year:

2007

Language:

english

File:

PDF, 605 KB

english, 2007

87

Imaging Motile Pathogens by Light microscopy and Cryo-electron Tomography

Frischknecht, F, Munter, S, Kudryashev, M, Lepper, S, Hegge, S, Baumeister, W, Wallich, R, Schwarz, U, Cyrklaff, M

Journal:

Microscopy and Microanalysis

Year:

2009

Language:

english

File:

PDF, 268 KB

english, 2009

88

To Foster a Love for Books

Journal:

Russian Education & Society

Year:

1959

Language:

english

File:

PDF, 181 KB

english, 1959

89

ChemInform Abstract: Catalytic Transformations of C3-Cyclic Olefins in the Presence of Metal Complexes. Part 4. Ni Complexes as Catalysts of the (2 + 2)Cyclodimerization of Spiro(2,3)hex-1-ene.

FURMAN, D. B., RUDASHEVSKAYA, T. YU., KUDRYASHEV, A. V., IVANOV, A. O., ISAEVA, L. S., MOROZOVA, L. N., PEGANOVA, T. A., BOGDANOV, V. S., KRAVTSOV, D. N., BRAGIN, O. V.

Journal:

Year:

1990

File:

PDF, 110 KB

1990

90

Dynamo Catalogue: Geometrical tools and data management for particle picking in subtomogram averaging of cryo-electron tomograms

Castaño-Díez, Daniel, Kudryashev, Mikhail, Stahlberg, Henning

Journal:

Journal of Structural Biology

Year:

2016

Language:

english

File:

PDF, 3.45 MB

english, 2016

91

Membrane vesicle secretion and prophage induction in multidrug-resistant Stenotrophomonas maltophilia in response to ciprofloxacin stress

Devos, Simon, Van Putte, Wouter, Vitse, Jolien, Van Driessche, Gonzalez, Stremersch, Stephan, Van Den Broek, Wim, Raemdonck, Koen, Braeckmans, Kevin, Stahlberg, Henning, Kudryashev, Misha, Savvides, S

Journal:

Environmental Microbiology

Year:

2017

Language:

english

File:

PDF, 3.29 MB

english, 2017

92

Functional insights into pathogen biology from 3D electron microscopy

Cyrklaff, Marek, Frischknecht, Friedrich, Kudryashev, Mikhail

Journal:

FEMS Microbiology Reviews

Year:

2017

Language:

english

File:

PDF, 7.75 MB

english, 2017

93

Site-specific randomization of the endogenous genome by a regulatable CRISPR-Cas9 piggyBac system in human cells

Ishida, Kentaro, Xu, Huaigeng, Sasakawa, Noriko, Lung, Mandy Siu Yu, Kudryashev, Julia Alexandra, Gee, Peter, Hotta, Akitsu

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 5.66 MB

english, 2018

94

European Microscopy Congress 2016: Proceedings || Structure of the bacterial type 3 secretion system in action

Kudryashev, Mikhail

Year:

2016

File:

PDF, 571 KB

2016

95

Nuclear Pore Complex Components in the Malaria Parasite Plasmodium berghei

Kehrer, Jessica, Kuss, Claudia, Andres-Pons, Amparo, Reustle, Anna, Dahan, Noa, Devos, Damien, Kudryashev, Mikhail, Beck, Martin, Mair, Gunnar R., Frischknecht, Friedrich

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 5.51 MB

english, 2018

96

Neutron time-of-flight diffractometric investigation of duplex steel residual stresses

Santos, R. Dos, Tietze, U., Priesmeyer, H. G., Kudryashev, V.

Journal:

Journal of Neutron Research

Year:

2001

Language:

english

File:

PDF, 627 KB

english, 2001

97

Neutron time-of-flight diffractometric investigation of duplex steel residual stresses

Santos, R. Dos, Tietze, U., Priesmeyer, H. G., Kudryashev, V.

Journal:

Journal of Neutron Research

Year:

2001

File:

PDF, 627 KB

2001

98

Curvature induction and membrane remodeling by FAM134B reticulon homology domain assist selective ER-phagy

Bhaskara, Ramachandra M., Grumati, Paolo, Garcia-Pardo, Javier, Kalayil, Sissy, Covarrubias-Pinto, Adriana, Chen, Wenbo, Kudryashev, Mikhail, Dikic, Ivan, Hummer, Gerhard

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 7.19 MB

english, 2019

99

Structure and assembly of the mitochondrial membrane remodelling GTPase Mgm1

Faelber, Katja, Dietrich, Lea, Noel, Jeffrey K., Wollweber, Florian, Pfitzner, Anna-Katharina, Mühleip, Alexander, Sánchez, Ricardo, Kudryashev, Misha, Chiaruttini, Nicolas, Lilie, Hauke, Schlegel, Je

Journal:

Year:

2019

Language:

english

File:

PDF, 32.30 MB

english, 2019

100

Structure and assembly of the mitochondrial membrane remodelling GTPase Mgm1

Faelber, Katja, Dietrich, Lea, Noel, Jeffrey K., Wollweber, Florian, Pfitzner, Anna-Katharina, Mühleip, Alexander, Sánchez, Ricardo, Kudryashev, Misha, Chiaruttini, Nicolas, Lilie, Hauke, Schlegel, Je

Journal:

Year:

2019

File:

PDF, 32.30 MB

2019