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101

Investigation of polarization effects in the gramicidin A channel from ab initio molecular dynamics simulations

Timko, Jeff, Kuyucak, Serdar

Journal:

The Journal of Chemical Physics

Year:

2012

Language:

english

File:

PDF, 988 KB

english, 2012

102

Changes in the kinetics and conductance of N-methyl-d-aspartate (NMDA)receptor activated single channels with temperature

Chunga, Shin-Ho, Kuyucak, Serdar

Journal:

Neuroscience Letters

Year:

1995

Language:

english

File:

PDF, 372 KB

english, 1995

103

Why the Drosophila Shaker K + Channel Is Not a Good Model for Ligand Binding to Voltage-Gated Kv1 Channels

Mahdavi, Somayeh, Kuyucak, Serdar

Journal:

Year:

2013

Language:

english

File:

PDF, 3.97 MB

english, 2013

104

expansion in the vibron model: Diatomic molecules

Kuyucak, S., Roberts, M. K.

Journal:

Physical Review A

Year:

1998

Language:

english

File:

PDF, 441 KB

english, 1998

105

Models of permeation in ion channels

Kuyucak, Serdar, Andersen, Olaf Sparre, Chung, Shin-Ho

Journal:

Reports on Progress in Physics

Year:

2001

Language:

english

File:

PDF, 488 KB

english, 2001

106

Insights into the Human Glutamate Transporters from the Bacterial Homolog Glt(Ph)

Heinzelmann, Germano, Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 40 KB

english, 2013

107

A General Prediction Method of Scorpion Toxins' Kv-Channel Selectivity Profiles using Haddock

Chen, Po-chia, Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 157 KB

english, 2012

108

Na + Interactions with the Neutral Amino Acid Transporter ASCT1

Scopelliti, Amanda J., Heinzelmann, Germano, Kuyucak, Serdar, Ryan, Renae M., Vandenberg, Robert J.

Journal:

Journal of Biological Chemistry

Year:

2014

Language:

english

File:

PDF, 2.58 MB

english, 2014

109

Molecular Dynamics Simulations Elucidate the Mechanism of Proton Transport in the Glutamate Transporter EAAT3

Heinzelmann, Germano, Kuyucak, Serdar

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 1.59 MB

english, 2014

110

Binding of Organic Cations to Gramicidin A Channel Studied with AutoDock and Molecular Dynamics Simulations

Patra, Swarna M., Baştuǧ, Turgut, Kuyucak, Serdar

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 466 KB

english, 2007

111

Free Energy Simulations of Binding of HsTx1 Toxin to Kv1 Potassium Channels: the Basis of Kv1.3/Kv1.1 Selectivity

Rashid, M. Harunur, Kuyucak, Serdar

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 1.51 MB

english, 2014

112

Computation of Standard Binding Free Energies of Polar and Charged Ligands to the Glutamate Receptor GluA2

Heinzelmann, Germano, Chen, Po-Chia, Kuyucak, Serdar

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 1.44 MB

english, 2014

113

Polarization of Water in the First Hydration Shell of K + and Ca 2+ Ions

Bucher, Denis, Kuyucak, Serdar

Journal:

Journal of Physical Chemistry B

Year:

2008

Language:

english

File:

PDF, 205 KB

english, 2008

114

Mechanism and Energetics of Ligand Release in the Aspartate Transporter Glt Ph

Heinzelmann, Germano, Bastug, Turgut, Kuyucak, Serdar

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 1.61 MB

english, 2013

115

Reconciling deformation parameters from fusion with those from Coulomb excitation

Leigh, J. R., Rowley, N., Lemmon, R. C., Hinde, D. J., Newton, J. O., Wei, J. X., Mein, J. C., Morton, C. R., Kuyucak, S., Kruppa, A. T.

Journal:

Physical Review C

Year:

1993

Language:

english

File:

PDF, 269 KB

english, 1993

116

Ab Initio Study of Water Polarization in the Hydration Shell of Aqueous Hydroxide: Comparison between Polarizable and Nonpolarizable Water Models

Bucher, Denis, Gray-Weale, Angus, Kuyucak, Serdar

Journal:

Journal of Chemical Theory and Computation

Year:

2010

Language:

english

File:

PDF, 2.53 MB

english, 2010

117

Molecular Dynamics and Continuum Electrostatics Studies of Inactivation in the HERG Potassium Channel

Kutteh, Ramzi, Vandenberg, Jamie I., Kuyucak, Serdar

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 420 KB

english, 2007

118

Computer simulation of ion conductance in membrane channels

Hoyles, Matthew, Kuyucak, Serdar, Chung, Shin-Ho

Journal:

Physical Review E

Year:

1998

Language:

english

File:

PDF, 165 KB

english, 1998

119

Band mixing effects in mean field theories. I. E 2 transitions in the interacting boson model 1

Kuyucak, S., Morrison, I.

Journal:

Physical Review C

Year:

1990

Language:

english

File:

PDF, 970 KB

english, 1990

120

The effect of hydrophobic and hydrophilic channel walls on the structure and diffusion of water and ions

Allen, T. W., Kuyucak, S., Chung, S.-H.

Journal:

The Journal of Chemical Physics

Year:

1999

Language:

english

File:

PDF, 819 KB

english, 1999

121

Role of Anharmonicities of Nuclear Vibrations in Fusion Reactions at Sub-barrier Energies

Hagino, K., Takigawa, N., Kuyucak, S.

Journal:

Physical Review Letters

Year:

1997

Language:

english

File:

PDF, 173 KB

english, 1997

122

Comment on ‘‘Spectroscopy of samarium isotopes in the sdg interacting boson model’’

Kuyucak, Serdar, Lac, Vi-Sieu

Journal:

Physical Review C

Year:

1993

Language:

english

File:

PDF, 239 KB

english, 1993

123

Excitation of nuclear anharmonic vibrations in heavy-ion fusion reactions

Hagino, K., Kuyucak, S., Takigawa, N.

Journal:

Physical Review C

Year:

1998

Language:

english

File:

PDF, 234 KB

english, 1998

124

boson model

Kuyucak, Serdar, Honma, Michio

Journal:

Physical Review C

Year:

2002

Language:

english

File:

PDF, 179 KB

english, 2002

125

Comment on “Mean-field approach to the algebraic treatment of molecules: Bent molecules”

Kuyucak, Serdar

Journal:

Physical Review A

Year:

1999

Language:

english

File:

PDF, 31 KB

english, 1999

126

Importance of higher order coupling effects in sub-barrier fusion

Balantekin, A. B., Bennett, J. R., Kuyucak, S.

Journal:

Physical Review C

Year:

1993

Language:

english

File:

PDF, 260 KB

english, 1993

127

Sub-barrier fusion in generalized boson models

Balantekin, A. B., Bennett, J. R., Kuyucak, S.

Journal:

Physical Review C

Year:

1994

Language:

english

File:

PDF, 279 KB

english, 1994

128

A potent and Kv1.3-selective analogue of the scorpion toxin HsTX1 as a potential therapeutic for autoimmune diseases

Rashid, M. Harunur, Huq, Redwan, Tanner, Mark R., Chhabra, Sandeep, Khoo, Keith K., Estrada, Rosendo, Dhawan, Vikas, Chauhan, Satendra, Pennington, Michael W., Beeton, Christine, Kuyucak, Serdar, Nort

Journal:

Scientific Reports

Year:

2014

Language:

english

File:

PDF, 1.23 MB

english, 2014

129

Subbarrier fusion in the interacting boson model

Balantekin, A. B., Bennett, J. R., DeWeerd, A. J., Kuyucak, S.

Journal:

Physical Review C

Year:

1992

Language:

english

File:

PDF, 541 KB

english, 1992

130

Determination of F spin symmetry in deformed nuclei

Ginocchio, Joseph N., Kuyucak, Serdar

Journal:

Physical Review C

Year:

1992

Language:

english

File:

PDF, 115 KB

english, 1992

131

Algebraic solution of a general quadrupole Hamiltonian in the interacting boson model

Kuyucak, S., Morrison, I.

Journal:

Physical Review C

Year:

1987

Language:

english

File:

PDF, 196 KB

english, 1987

132

Critical test of multi- j supersymmetries from magnetic moment measurements

Kuyucak, Serdar, Stuchbery, Andrew E.

Journal:

Physical Review C

Year:

1993

Language:

english

File:

PDF, 192 KB

english, 1993

133

Hexadecapole systematics in the interacting boson model

Kuyucak, S., Morrison, I., Sebe, T.

Journal:

Physical Review C

Year:

1991

Language:

english

File:

PDF, 669 KB

english, 1991

134

Medium-energy hadron-nucleus scattering in the 1/ N expansion formalism

Kuyucak, S., Morrison, I.

Journal:

Physical Review C

Year:

1993

Language:

english

File:

PDF, 448 KB

english, 1993

135

properties?

Barrett, B. R., Kuyucak, S., Navrátil, P., Van Isacker, P.

Journal:

Physical Review C

Year:

1999

Language:

english

File:

PDF, 53 KB

english, 1999

136

SU(3) limit of the interacting boson model as a 1/ N expansion

Kuyucak, S., Morrison, I.

Journal:

Physical Review C

Year:

1990

Language:

english

File:

PDF, 161 KB

english, 1990

137

-band moment of inertia anomaly

Kuyucak, S., Morrison, I.

Journal:

Physical Review C

Year:

1988

Language:

english

File:

PDF, 135 KB

english, 1988

138

Tests and applications of self-consistent cranking in the interacting boson model

Kuyucak, Serdar, Sugita, Michiaki

Journal:

Physical Review C

Year:

1999

Language:

english

File:

PDF, 301 KB

english, 1999

139

Computational approaches for designing potent and selective analogs of peptide toxins as novel therapeutics

Kuyucak, Serdar, Norton, Raymond S

Journal:

Future Medicinal Chemistry

Year:

2014

Language:

english

File:

PDF, 2.44 MB

english, 2014

140

Nature of interband transitions in collective models

Kuyucak, S., Morrison, I.

Journal:

Physical Review Letters

Year:

1989

Language:

english

File:

PDF, 695 KB

english, 1989

141

Signature of g boson in the interacting-boson model from g -factor variations

Kuyucak, S., Morrison, I.

Journal:

Physical Review Letters

Year:

1987

Language:

english

File:

PDF, 403 KB

english, 1987

142

Systematic study of subbarrier fusion in rare-earth nuclei

Balantekin, A. B., Bennett, J. R., Kuyucak, S.

Journal:

Physical Review C

Year:

1994

Language:

english

File:

PDF, 444 KB

english, 1994

143

Relations between fusion cross sections and average angular momenta

Balantekin, A. B., DeWeerd, A. J., Kuyucak, S.

Journal:

Physical Review C

Year:

1996

Language:

english

File:

PDF, 213 KB

english, 1996

144

Description of superdeformed nuclei in the interacting boson model

Kuyucak, S., Honma, M., Otsuka, T.

Journal:

Physical Review C

Year:

1996

Language:

english

File:

PDF, 185 KB

english, 1996

145

The Pore Domain Outer Helix Contributes to Both Activation and Inactivation of the hERG K+ Channel

Ju, P., Pages, G., Riek, R. P., Chen, P.-c., Torres, A. M., Bansal, P. S., Kuyucak, S., Kuchel, P. W., Vandenberg, J. I.

Journal:

Journal of Biological Chemistry

Year:

2009

Language:

english

File:

PDF, 1.42 MB

english, 2009

146

Ab initio calculation of the potential of mean force for dissociation of aqueous Ca–Cl

Timko, Jeff, De Castro, Alexandra, Kuyucak, Serdar

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 639 KB

english, 2011

147

Systematic Study of Binding of -Conotoxins to the Sodium Channel NaV1.4

Mahdavi, Somayeh, Kuyucak, Serdar

Journal:

Year:

2014

Language:

english

File:

PDF, 2.00 MB

english, 2014

148

Calculation of free energy changes due to mutations from alchemical free energy simulations

Rashid, M. Harunur, Heinzelmann, Germano, Kuyucak, Serdar

Journal:

Journal of Theoretical and Computational Chemistry

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

149

Charge state of the fast gate in chloride channels: Insights from electrostatic calculations in a schematic model

Wijesinghe, Rajiv, Coorey, Nathan, Kuyucak, Serdar

Journal:

The Journal of Chemical Physics

Year:

2007

Language:

english

File:

PDF, 157 KB

english, 2007

150

Response to “Comment on ‘Free energy simulations of single and double ion occupancy in gramicidin A’ ” [J. Chem. Phys. 128, 227101 (2008)]

Baştuğ, Turgut, Kuyucak, Serdar

Journal:

The Journal of Chemical Physics

Year:

2008

Language:

english

File:

PDF, 447 KB

english, 2008