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51

Different intrastrand and interstrand contributions to stacking account for roll variations at the alternating purine-pyrimidine sequences in A-DNA and A-RNA

Jiří Šponer, Jaroslav Kypr

Journal:

Journal of Molecular Biology

Year:

1991

Language:

english

File:

PDF, 455 KB

english, 1991

52

The thrombin binding aptamer GGTTGGTGTGGTTGG forms a bimolecular guanine tetraplex

Markéta Fialová, Jaroslav Kypr, Michaela Vorlíčková

Journal:

Biochemical and Biophysical Research Communications

Year:

2006

Language:

english

File:

PDF, 176 KB

english, 2006

53

Oligo(dT) is not a correct native PAGE marker for single-stranded DNA

Iva Kejnovská, Jaroslav Kypr, Michaela Vorlíčková

Journal:

Biochemical and Biophysical Research Communications

Year:

2007

Language:

english

File:

PDF, 313 KB

english, 2007

54

Conformational properties of DNA containing (CCA)n and (TGG)n trinucleotide repeats

Michal Zemánek, Jaroslav Kypr, Michaela Vorlíčková

Journal:

International Journal of Biological Macromolecules

Year:

2005

Language:

english

File:

PDF, 400 KB

english, 2005

55

Factors influencing resistance of UV-irradiated DNA to the restriction endonuclease cleavage

Eduard Kejnovský, Karel Nejedlý, Jaroslav Kypr

Journal:

International Journal of Biological Macromolecules

Year:

2004

Language:

english

File:

PDF, 226 KB

english, 2004

56

Role of loops in the guanine quadruplex formation by DNA/RNA hybrid analogs of G4T4G4

Jitka Vondrušková, Jaroslav Kypr, Iva Kejnovská, Markéta Fialová, Michaela Vorlíčková

Journal:

International Journal of Biological Macromolecules

Year:

2008

Language:

english

File:

PDF, 718 KB

english, 2008

57

Genomic occurrence of microsatellites containing integral and non-integral repeat numbers

Iva Hrabcová, Jaroslav Kypr

Journal:

Biochemical and Biophysical Research Communications

Year:

2003

Language:

english

File:

PDF, 396 KB

english, 2003

58

Structures of poly(dA-dT,ip5dU) containing various small amounts of the antiherpetic 5-isopropyl-2′-deoxyuridine

János Sági, Jitka Štokrová, Michaela Vorlíčková, Alena Spánová, Jaroslav Kypr, Éva Ruff, László Ötvös

Journal:

Biochemical and Biophysical Research Communications

Year:

1992

Language:

english

File:

PDF, 1.94 MB

english, 1992

59

A part of codon bias in genes protects protein spatial structures from destabilization by random single point mutations

Journal:

Biochemical and Biophysical Research Communications

Year:

1986

Language:

english

File:

PDF, 176 KB

english, 1986

60

Different behavior of the octadeoxynucleotides d(A-T) and d(T-A)4 at high concentrations of cesium fluoride4

Michaela Vorličková, Eckhard Birch-Hirschfeld, Hartmut Lang, Jaroslav Kypr

Journal:

Biochemical and Biophysical Research Communications

Year:

1986

Language:

english

File:

PDF, 252 KB

english, 1986

61

Strance double helix of poly(dA-dT) in high-salt solution

Jaroslav Kypr, Michaela Vorlíčková, Miloš Buděšinský, Vladimír Sklenář

Journal:

Biochemical and Biophysical Research Communications

Year:

1981

Language:

english

File:

PDF, 388 KB

english, 1981

62

Lambda phage protein Nu 1 contains the conserved DNA binding fold of repressors

Jaroslav Kypr, Jan Mrázek

Journal:

Journal of Molecular Biology

Year:

1986

Language:

english

File:

PDF, 174 KB

english, 1986

63

Conformational transitions of a synthetic DNA poly(dA-dU). poly(dA-dU) in concentrated solutions of caesium fluoride

Michaela Vorlíčková, Jaroslav Kypr

Journal:

International Journal of Biological Macromolecules

Year:

1984

Language:

english

File:

PDF, 379 KB

english, 1984

64

Occurrence of nucleotide triplets in genes and secondary structure of the coded proteins

Jaroslav Kypr, Jan Mrázek

Journal:

International Journal of Biological Macromolecules

Year:

1987

Language:

english

File:

PDF, 504 KB

english, 1987

65

Aliphatic substituents in place of thymine methyl promote zig-zag character of the poly(dA-dT)·poly(dA-dT) backbone

Michaela Vorlíčková, Jaroslav Kypr, János Sági, László Ötvös, Vladimír Sklenář

Journal:

International Journal of Biological Macromolecules

Year:

1987

Language:

english

File:

PDF, 539 KB

english, 1987

66

Destabilization of the duplex and the high-salt Z-form of poly(dG-methyl5dC) by substitution of ethyl for the 5-methyl group

János Sági, Attila Szemzö, László Ötvös, Michaela Vorlíčková, Jaroslav Kypr

Journal:

International Journal of Biological Macromolecules

Year:

1991

Language:

english

File:

PDF, 704 KB

english, 1991

67

Caesium fluoride-induced changes in the c.d. spectra of synthetic DNA fragments

Jaroslav Kypr, Michaela Vorlíčková, Gerald Zon, Roland Weiss, Luboš Arnold, Jiří Smrt

Journal:

International Journal of Biological Macromolecules

Year:

1991

Language:

english

File:

PDF, 462 KB

english, 1991

68

Nucleotide composition bias and CpG dinucleotide content in the genomes of HIV and HTLV 12

Jaroslav Kypr, Jan Mrázek, Josef Reich

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression

Year:

1989

Language:

english

File:

PDF, 330 KB

english, 1989

69

Comparison of the solution and crystal conformations of (G + C)-rich fragments of DNA

Vorlícková, M., Subirana, J.A., Chládková, J., Tejralová, I., Huynh-Dinh, T., Arnold, L., Kypr, J.

Journal:

Biophysical Journal

Year:

1996

Language:

english

File:

PDF, 856 KB

english, 1996

70

Salt-induced conformational transition of poly[d(A-T)]·poly[d(A-T)]

Michaela Vorlíčková, Jaroslav Kypr, Vladimír Sklenář, A. Klug

Journal:

Journal of Molecular Biology

Year:

1983

Language:

english

File:

PDF, 429 KB

english, 1983

71

Books received

Vorlíc̆ková, Michaela, Kypr, Jaroslav, Kleinwächter, Vladimír

Journal:

Journal of Medieval History

Year:

1986

Language:

english

File:

PDF, 147 KB

english, 1986

72

Evaluation of ordered subsets expectation maximization (OS-EM) on normal myocardial SPET perfusion studies L Dierickx, C Vanhove, PR Franken. Free University of Brussels (VUB), Belgium

Vorlíc̆ková, Michaela, Kypr, Jaroslav, Kleinwächter, Vladimír

Journal:

Journal of Nuclear Cardiology

Year:

1999

Language:

english

File:

PDF, 116 KB

english, 1999

73

Sequence-dependent changes in the chiroptical properties of DNA upon interaction with dipyrandium

Vorlíc̆ková, Michaela, Kypr, Jaroslav, Kleinwächter, Vladimír

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

1985

Language:

english

File:

PDF, 557 KB

english, 1985

74

Conformations of alternating purine-pyrimidine DNAs in high-CsF solutions and their reversal by dipyrandium, ethidium and high temperature

Kypr, Jaroslav, Vorlíčková, Michaela

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

1985

Language:

english

File:

PDF, 602 KB

english, 1985

75

Thymine Methyl Groups Stabilize the Putative A-Form of the Synthetic DNA Poly(amino2dA-dT)

Kypr, Jaroslav, Sagi, Janos, Szakonyi, Erika, Ebinger, Katalin, Penazova, Hana, Chladkova, Jana, Vorlickova, Michaela

Journal:

Year:

1994

Language:

english

File:

PDF, 743 KB

english, 1994

76

Divalent Zinc Cations Induce the Formation of Two Distinct Homoduplexes of a d(GA)20 DNA Sequence

Ortiz-Lombardia, Miguel, Eritja, Ramon, Azorin, Fernando, Kypr, Jaroslav, Tejralova, Iva, Vorlickova, Michaela

Journal:

Year:

1995

Language:

english

File:

PDF, 1.91 MB

english, 1995

77

The Longest (A+T) and (G+C) Blocks in the Human and Other Genomes

Hrabcová, Iva, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2008

Language:

english

File:

PDF, 609 KB

english, 2008

78

Invariant and Variable Base Stacking Geometries in B-DNA and A-DNA

Neugebauerová, Svatava, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2000

Language:

english

File:

PDF, 95 KB

english, 2000

79

Correlations and Anticorrelations Among Nucleotide Distributions Along the Genomes of Various Organisms

Häring, David, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1999

Language:

english

File:

PDF, 527 KB

english, 1999

80

Nucleotide Sequences Flanking Dinucleotide Microsatellites in In the Human, Mouse and Drosophila Genomes

Matula, Michal, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1999

Language:

english

File:

PDF, 504 KB

english, 1999

81

Conformational Variability of Poly(dA-dT)·Poly(dA-dT) and Some Other Deoxyribonucleic Acids Includes a Novel Type of Double Helix

Vorlíčková, Michaela, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1985

Language:

english

File:

PDF, 1.07 MB

english, 1985

82

UV Light-Induced Crosslinking of the Strands of Poly(dA-dT) and Related Alternating Purine-Pyrimidine DNAs

Kypr, Jaroslav, Peňázová, Hana, Sági, János, Pospíšilová, Šárka, Vorlíčková, Michaela

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1994

Language:

english

File:

PDF, 1.78 MB

english, 1994

83

Replication, Transcription and Nuclease Digestion of the Unusual X-DNA Double Helix of Poly(amino 2 dA-dT)

Sági, János, Ebinger, Katalin, Vorli[ctilde]ková, Michaela, Kypr, Jaroslav, Ötvös, László

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1990

Language:

english

File:

PDF, 593 KB

english, 1990

84

Interaction Between the Guanine Amino Group and the Adenine Six Membered Ring Stabilizes the Unusual Conformation of the CpA Step in B-DNA

Šponer, J., Jursa, J., Kypr, J.

Journal:

Nucleosides and Nucleotides

Year:

1994

Language:

english

File:

PDF, 410 KB

english, 1994

85

Relationships among Rise, Cup, Roll and Stagger in DNA Suggested by Empirical Potential Studies of Base Stacking

Šponer, Jiří, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1993

Language:

english

File:

PDF, 794 KB

english, 1993

86

DNA extraction by zinc

Kejnovsky, E., Kypr, J.

Journal:

Nucleic Acids Research

Year:

1997

Language:

english

File:

PDF, 21 KB

english, 1997

87

UV Light-Induced Crosslinking of Short DNA Duplex Strands: Nucleotide Sequence Preferences and a Prominent Role of the Duplex Ends

Kovanda, Jiří, Kejnovský, Eduard, Arnold, Luboš, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1996

Language:

english

File:

PDF, 941 KB

english, 1996

88

Unusual Contribution of 2-Aminoadenine to the Thermostability of DNA

Sági, J., Szakonyi, E., Vorlíčková, M., Kypr, J.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1996

Language:

english

File:

PDF, 597 KB

english, 1996

89

Probing Conformational Isomerizations of Double-Stranded Poly(dA-dT) by a Substitution of Minor Amounts of the Thymine Methyls with Bulky Hydrophobic Isopropyl Groups

Vorlíčková, Michaela, Sági, János, Chládková, Jana, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1994

Language:

english

File:

PDF, 510 KB

english, 1994

90

Conformation of the synthetic DNA poly(amino 2 dA-dT) duplex in high-salt and aqueous alcohol solutions

Vorličková, Michaela, Sági, János, Szabolcs, Anna, Szemzö, Attila, Ötvös, László, Kypr, Jaroslav

Journal:

Nucleic Acids Research

Year:

1988

Language:

english

File:

PDF, 420 KB

english, 1988

91

Circular Dichroism Studies of Salt- and Alcohol- Induced Conformational Changes in Cyanophage S-2L DNA Which Contains Amino 2 Adenine Instead of Adenine

Vorličková, Michaela, Khudyakov, I. Ya., Hejtmánková, Ivana, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1991

Language:

english

File:

PDF, 240 KB

english, 1991

92

The Unusual X-Form DNA in Oligodeoxynucleotides: Dependence of Stability on the Base Sequence and Length

Kypr, Jaroslav, Chládková, Jana, Arnold, Luboš, Sági, János, Szemzö, Attila, Vorlíčková, Michaela

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1996

Language:

english

File:

PDF, 607 KB

english, 1996

93

Middle-range clustering of nucleotides in genomes

Mrázek, Jan, Kypr, Jaroslav

Journal:

Year:

1995

Language:

english

File:

PDF, 398 KB

english, 1995

94

Theoretical Analysis of the Base Stacking in DNA: Choice of the Force Field and a Comparison with the Oligonucleotide Crystal Structures

Šponer, Jiřrí, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1993

Language:

english

File:

PDF, 568 KB

english, 1993

95

Base Pair Buckling Can Eliminate the Interstrand Purine Clash at the CpG Steps in B-DNA Caused by the Base Pair Propeller Twisting

[Stilde]poner, Ji[rtilde]i, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1990

Language:

english

File:

PDF, 532 KB

english, 1990

96

Alkyl Substituent in Place of the Thymine Methyl Group Controls the A-X Conformational Bimorphism in Poly(dA-dT)

Vorličková, Michaela, Sági, János, Hejtmánková, Ivana, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1991

Language:

english

File:

PDF, 293 KB

english, 1991

97

Aqueous trifluorethanol solutions simulate the environment of DNA in the crystalline state

Kypr, J., Chladkova, J., Zimulova, M., Vorlickova, M.

Journal:

Nucleic Acids Research

Year:

1999

Language:

english

File:

PDF, 532 KB

english, 1999

98

Conformational transitions of poly(dA-bromo 5 dU) and poly(dA-iodo 5 dU) in solution

Vorlickovaá, Michaela, Chlaádkovaá, Jana, Kypr, Jaroslav

Journal:

Nucleic Acids Research

Year:

1992

Language:

english

File:

PDF, 360 KB

english, 1992

99

Conformational Isomerizations of Poly(dA-dT) Are Dramatically Influenced by a Substitution of a Minor Amount of Adenine by Purine or Amino 2 purine

Vorlíčková, Michaela, Sági, János, Szabolcs, Anna, Ebinger, Kati, Fellegvári, Irén, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1993

Language:

english

File:

PDF, 700 KB

english, 1993

100

Poly(amino 2 dA-dT) Isomerizes into the Unusual X-DNA Double Helix at Physiological Conditions Inducing Z-DNA in Poly(dG-methyl 5 dC)

Vorlickova, Michaela, Sagi, Janos, Szabolcs, Anna, Szemzo, Attila, Otvos, Laszlo, Kypr, Jaroslav

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1988

Language:

english

File:

PDF, 476 KB

english, 1988