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101

GtrA protein Rv3789 is required for arabinosylation of arabinogalactan in Mycobacterium tuberculosis

Kolly, Gaëlle S., Mukherjee, Raju, Kilacsková, Emöke, Abriata, Luciano A., Raccaud, Mahé, Blaško, Jaroslav, Sala, Claudia, Dal Peraro, Matteo, Mikušová, Katarína, Cole, Stewart T.

Journal:

Journal of Bacteriology

Year:

2015

Language:

english

File:

PDF, 1.16 MB

english, 2015

102

Early signet ring cell carcinoma arising from colonic adenoma: the molecular profiling supports the adenoma-carcinoma sequence

Bellan, Alberto, Cappellesso, Rocco, Mele, Marcello Lo, Peraro, Laura, Balsamo, Laura, Lanza, Cristiano, Fassan, Matteo, Rugge, Massimo

Journal:

Human Pathology

Year:

2015

Language:

english

File:

PDF, 382 KB

english, 2015

103

LipidBuilder: A Framework To Build Realistic Models for Biological Membranes

Bovigny, Christophe, Tamò, Giorgio, Lemmin, Thomas, Maïno, Nicolas, Dal Peraro, Matteo

Journal:

Journal of Chemical Information and Modeling

Year:

2015

Language:

english

File:

PDF, 3.77 MB

english, 2015

104

YIS-4SOCIAL AND HEALTH INTEGRATED APPROACH TO ALCOHOL USE DISORDERS (AUDs) AND ALCOHOL ABUSE/DEPENDENCE: AN ITALIAN EXPERIENCE IN A SPECIALIST SERVICE

Vicario, S., Rosa-Rizzotto, E., Peraro, L., Caroli, D., De Lazzari, F., Vendramin, A., Lobello, S.

Journal:

Alcohol and Alcoholism

Year:

2015

Language:

english

File:

PDF, 43 KB

english, 2015

105

O6 * FREE ORAL COMMUNICATIONS 6: PSYCHOSOCIAL FACTORS AND ALCOHOL USE DISORDERS

Zullino, D., Achab, S., Thorens, G., Khan, R., Manghi, R., Khazaal, Y., Lallemand, F., Ward, R., De Witte, P., Caroli, D., Rosa-Rizzotto, E., Peraro, L., Cocchio, S., Baldo, V., Simoncello, I., Vendra

Journal:

Alcohol and Alcoholism

Year:

2013

Language:

english

File:

PDF, 40 KB

english, 2013

106

Length control of the injectisome needle requires only one molecule of Yop secretion protein P (YscP)

Stefanie Wagner, Marco Stenta, Lisa C. Metzger, Matteo Dal Peraro, Guy R. Cornelis and R. John Collier

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 2.07 MB

english, 2010

107

New Insight into the Catalytic and Inhibition Mechanism of the Human Acyl Protein Thioesterase

Audagnotto, Martina, Ho, Sylvia, Sandoz, Patrick, Andenmatten, Nicole, van der Goot, Gisou, Dal Peraro, Matteo

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 61 KB

english, 2016

108

Cooperative motion of a key positively charged residue and metal ions for DNA replication catalyzed by human DNA Polymerase-η

Genna, Vito, Gaspari, Roberto, Dal Peraro, Matteo, De Vivo, Marco

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 2.40 MB

english, 2016

109

One-loop triple collinear splitting amplitudes in QCD

Badger, Simon, Buciuni, Francesco, Peraro, Tiziano

Journal:

Journal of High Energy Physics

Year:

2015

Language:

english

File:

PDF, 750 KB

english, 2015

110

GoSam applications for automated NLO calculations

Cullen, G, Deurzen, H van, Greiner, N, Heinrich, G, Luisoni, G, Mastrolia, P, Mirabella, E, Ossola, G, Peraro, T, Reichel, J, Schlenk, J, Soden-Fraunhofen, J F von, Tramontano, F

Journal:

Journal of Physics Conference Series

Year:

2014

Language:

english

File:

PDF, 1.01 MB

english, 2014

111

A coiled coil switch mediates cold sensing by the thermosensory protein DesK

Saita, Emilio, Abriata, Luciano A., Tsai, Yi Ting, Trajtenberg, Felipe, Lemmin, Thomas, Buschiazzo, Alejandro, Dal Peraro, Matteo, de Mendoza, Diego, Albanesi, Daniela

Journal:

Molecular Microbiology

Year:

2015

Language:

english

File:

PDF, 6.16 MB

english, 2015

112

Immobilization of the N-terminal helix stabilizes prefusion paramyxovirus fusion proteins

Song, Albert S., Poor, Taylor A., Abriata, Luciano A., Jardetzky, Theodore S., Dal Peraro, Matteo, Lamb, Robert A.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 2.19 MB

english, 2016

113

Detection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated server

Abriata, Luciano A., Bovigny, Christophe, Dal Peraro, Matteo

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.69 MB

english, 2016

114

Molecular Effects of Concentrated Solutes on Protein Hydration, Dynamics, and Electrostatics

Abriata, Luciano A., Spiga, Enrico, Peraro, Matteo Dal

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 1.38 MB

english, 2016

115

Effect of the Synaptic Plasma Membrane on the Stability of the Amyloid Precursor Protein Homodimer

Audagnotto, Martina, Lemmin, Thomas, Barducci, Alessandro, Dal Peraro, Matteo

Journal:

The Journal of Physical Chemistry Letters

Year:

2016

Language:

english

File:

PDF, 3.97 MB

english, 2016

116

[Methods in Enzymology] Peptide, Protein and Enzyme Design Volume 580 || Conformational Restriction of Peptides Using Dithiol Bis-Alkylation

Year:

2016

Language:

english

File:

PDF, 1.75 MB

english, 2016

117

Theoretical inclusion of deprotonated 2,4-D and dicamba pesticides in ß-cyclodextrin

Pereira, Robson A., da Silva Borges, Willian Miguel, Peraro, Cristian Rossi, Anconi, Cleber P. A.

Journal:

Journal of Inclusion Phenomena and Macrocyclic Chemistry

Year:

2016

Language:

english

File:

PDF, 605 KB

english, 2016

118

Olfactory receptor pseudo-pseudogenes

Prieto-Godino, Lucia L., Rytz, Raphael, Bargeton, Benoîte, Abuin, Liliane, Arguello, J. Roman, Peraro, Matteo Dal, Benton, Richard

Journal:

Year:

2016

Language:

english

File:

PDF, 4.51 MB

english, 2016

119

A rheostat mechanism governs the bifurcation of carbon flux in mycobacteria

Murima, Paul, Zimmermann, Michael, Chopra, Tarun, Pojer, Florence, Fonti, Giulia, Dal Peraro, Matteo, Alonso, Sylvie, Sauer, Uwe, Pethe, Kevin, McKinney, John D.

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 2.04 MB

english, 2016

120

First-derivative ultraviolet spectrophotometric and high performance liquid chromatographic determination of ketoconazole in pharmaceutical emulsions

Kedor-Hackmann, Erika Rosa Maria, Santoro, Maria Inês Rocha Miritello, Singh, Anil Kumar, Peraro, Andréia Cricco

Journal:

Revista Brasileira de Ciências Farmacêuticas

Year:

2006

Language:

english

File:

PDF, 204 KB

english, 2006

121

Evolution of Acid-Sensing Olfactory Circuits in Drosophilids

Prieto-Godino, Lucia L., Rytz, Raphael, Cruchet, Steeve, Bargeton, Benoîte, Abuin, Liliane, Silbering, Ana F., Ruta, Vanessa, Dal Peraro, Matteo, Benton, Richard

Journal:

Year:

2017

Language:

english

File:

PDF, 5.61 MB

english, 2017

122

Cryo-EM structure of aerolysin variants reveals a novel protein fold and the pore-formation process

Iacovache, Ioan, De Carlo, Sacha, Cirauqui, Nuria, Dal Peraro, Matteo, van der Goot, F. Gisou, Zuber, Benoît

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.66 MB

english, 2016

123

Molecular Simulations to Unravel the Allosteric Interplay between the SH2 Domain and A-loop Plasticity in Protein Kinases

La Sala, Giuseppina, Riccardi, Laura, Gaspari, Roberto, Cavalli, Andrea, Hantschel, Oliver, Dal Peraro, Matteo, De Vivo, Marco

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 46 KB

english, 2017

124

Direct Identification of Adenine, Thymine, Cytosine and Guanine using Aerolysin Nanopore

Cao, Chan, Dal Peraro, Matteo, Long, Yitao

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 40 KB

english, 2017

125

Protein post-translational modifications: In silico prediction tools and molecular modeling

Audagnotto, Martina, Dal Peraro, Matteo

Journal:

Computational and Structural Biotechnology Journal

Year:

2017

Language:

english

File:

PDF, 1.09 MB

english, 2017

126

One Constraint at a Time: Using Viability Principles in Integrative Modeling of Macromolecular Assemblies

Tamo, Giorgio E., Maesani, Andrea, Traeger, Sylvain, Thomas Degiacomi, Matteo, Floreano, Dario, Dal Peraro, Matteo

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 42 KB

english, 2017

127

Signal Sensing and Transduction by Histidine Kinases as Unveiled through Studies on a Temperature Sensor

Abriata, Luciano A., Albanesi, Daniela, Dal Peraro, Matteo, de Mendoza, Diego

Journal:

Accounts of Chemical Research

Year:

2017

Language:

english

File:

PDF, 4.48 MB

english, 2017

128

Diversity-Oriented Stapling Yields Intrinsically Cell-Penetrant Inducers of Autophagy

Peraro, Leila, Zou, Zhongju, Makwana, Kamlesh M., Cummings, Ashleigh E., Ball, Haydn L., Yu, Hongtao, Lin, Yu-Shan, Levine, Beth, Kritzer, Joshua A.

Journal:

Journal of the American Chemical Society

Year:

2017

Language:

english

File:

PDF, 7.10 MB

english, 2017

129

Small-xresummation from HELL

Marco Bonvini,Simone Marzani,Tiziano Peraro

Journal:

The European Physical Journal C

Year:

2016

Language:

english

File:

PDF, 2.95 MB

english, 2016

130

Adaptive integrand decomposition in parallel and orthogonal space

Pierpaolo Mastrolia,Tiziano Peraro,Amedeo Primo

Journal:

Journal of High Energy Physics

Year:

2016

Language:

english

File:

PDF, 1.32 MB

english, 2016

131

Disentangling constraints using viability evolution principles in integrative modeling of macromolecular assemblies

Tamò, Giorgio, Maesani, Andrea, Träger, Sylvain, Degiacomi, Matteo T., Floreano, Dario, Dal Peraro, Matteo

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.10 MB

english, 2017

132

A Biologically-validated HCV E1E2 Heterodimer Structural Model

Castelli, Matteo, Clementi, Nicola, Pfaff, Jennifer, Sautto, Giuseppe A., Diotti, Roberta A., Burioni, Roberto, Doranz, Benjamin J., Dal Peraro, Matteo, Clementi, Massimo, Mancini, Nicasio

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.91 MB

english, 2017

133

Functional assays for the assessment of the pathogenicity of variants in GOSR2, an ER-to-Golgi SNARE involved in progressive myoclonus epilepsies

Völker, Jörn M., Dergai, Mykola, Abriata, Luciano A., Mingard, Yves, Ysselstein, Daniel, Krainc, Dimitri, Dal Peraro, Matteo, von Mollard, Gabriele Fischer, Fasshauer, Dirk, Koliwer, Judith, Schwake,

Journal:

Disease Models & Mechanisms

Year:

2017

Language:

english

File:

PDF, 2.33 MB

english, 2017

134

Definition and classification of evaluation units for tertiary structure prediction in CASP12 facilitated through semi-automated metrics

Abriata, Luciano A., Kinch, Lisa N., Tamò, Giorgio E., Monastyrskyy, Bohdan, Kryshtafovych, Andriy, Dal Peraro, Matteo

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.89 MB

english, 2017

135

Structural, physicochemical and dynamic features conserved within the aerolysin pore-forming toxin family

Cirauqui, Nuria, Abriata, Luciano A., van der Goot, F. Gisou, Dal Peraro, Matteo

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 6.93 MB

english, 2017

136

Moderate salt restriction with or without paricalcitol in type 2 diabetes and losartan-resistant macroalbuminuria (PROCEED): a randomised, double-blind, placebo-controlled, crossover trial

Parvanova, Aneliya, Trillini, Matias, Podestà, Manuel A, Iliev, Ilian Petrov, Ruggiero, Barbara, Abbate, Manuela, Perna, Annalisa, Peraro, Francesco, Diadei, Olimpia, Rubis, Nadia, Gaspari, Flavio, Ca

Journal:

The Lancet Diabetes & Endocrinology

Year:

2017

Language:

english

File:

PDF, 364 KB

english, 2017

137

Recruitment of the amyloid precursor protein by γ-secretase at the synaptic plasma membrane

Audagnotto, Martina, Kengo Lorkowski, Alexander, Dal Peraro, Matteo

Journal:

Biochemical and Biophysical Research Communications

Year:

2017

Language:

english

File:

PDF, 1.02 MB

english, 2017

138

Assessment of hard target modeling in CASP12 reveals an emerging role of alignment-based contact prediction methods

Abriata, Luciano A., Tamò, Giorgio E., Monastyrskyy, Bohdan, Kryshtafovych, Andriy, Dal Peraro, Matteo

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.84 MB

english, 2017

139

Formation of β-Cyclodextrin Inclusion Compound with Doxycycline: a Theoretical Approach

Peraro, Cristian R., Anconi, Amanda C.S.A., Anconi, Cleber P.A.

Journal:

Chemical Physics Letters

Year:

2017

Language:

english

File:

PDF, 754 KB

english, 2017

140

To $${d}$$ d , or not to $${d}$$ d : recent developments and comparisons of regularization schemes

Gnendiger, C., Signer, A., Stöckinger, D., Broggio, A., Cherchiglia, A. L., Driencourt-Mangin, F., Fazio, A. R., Hiller, B., Mastrolia, P., Peraro, T., Pittau, R., Pruna, G. M., Rodrigo, G., Sampaio,

Journal:

The European Physical Journal C

Year:

2017

Language:

english

File:

PDF, 1.35 MB

english, 2017

141

Assessment of data-assisted prediction by inclusion of crosslinking/mass-spectrometry and small angle X-ray scattering data in the 12 th Critical Assessment of protein Structure Prediction experiment

Tamò, Giorgio E., Abriata, Luciano A., Fonti, Giulia, Dal Peraro, Matteo

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.96 MB

english, 2017

142

Tensor integrand reduction via Laurent expansion

Hirschi, Valentin, Peraro, Tiziano

Journal:

Journal of High Energy Physics

Year:

2016

Language:

english

File:

PDF, 819 KB

english, 2016

143

Blood Pressure and Metabolic Effects of Acetyl-l-Carnitine in Type 2 Diabetes: DIABASI Randomized Controlled Trial

Parvanova, Aneliya, Trillini, Matias, Podestà, Manuel A, Iliev, Ilian P, Aparicio, Carolina, Perna, Annalisa, Peraro, Francesco, Rubis, Nadia, Gaspari, Flavio, Cannata, Antonio, Ferrari, Silvia, Bossi

Journal:

Journal of the Endocrine Society

Year:

2018

Language:

english

File:

PDF, 607 KB

english, 2018

144

Getting in: emerging methods and design principles for cell-penetrant peptides

Peraro, Leila, Kritzer, Joshua

Journal:

Angewandte Chemie International Edition

Year:

2018

Language:

english

File:

PDF, 2.84 MB

english, 2018

145

Scattering amplitudes over finite fields and multivariate functional reconstruction

Peraro, Tiziano

Journal:

Journal of High Energy Physics

Year:

2016

Language:

english

File:

PDF, 768 KB

english, 2016

146

Local integrands for two-loop all-plus Yang-Mills amplitudes

Badger, Simon, Mogull, Gustav, Peraro, Tiziano

Journal:

Journal of High Energy Physics

Year:

2016

Language:

english

File:

PDF, 624 KB

english, 2016

147

Getting in: emerging methods and design principles for cell-penetrant peptides

Peraro, Leila, Kritzer, Joshua

Journal:

Angewandte Chemie

Year:

2018

Language:

english

File:

PDF, 2.84 MB

english, 2018

148

Transcriptional regulatory logic of the diurnal cycle in the mouse liver

Sobel, Jonathan Aryeh, Krier, Irina, Andersin, Teemu, Raghav, Sunil, Canella, Donatella, Gilardi, Federica, Kalantzi, Alexandra Styliani, Rey, Guillaume, Weger, Benjamin, Gachon, Frédéric, Dal Peraro,

Journal:

Year:

2017

Language:

english

File:

PDF, 5.00 MB

english, 2017

149

TAL Effectors Specificity Stems from Negative Discrimination

Wicky, Basile I. M., Stenta, Marco, Dal Peraro, Matteo, Carloni, Paolo

Journal:

Year:

2013

Language:

english

File:

PDF, 1.47 MB

english, 2013

150

How Structural and Physicochemical Determinants Shape Sequence Constraints in a Functional Enzyme

Abriata, Luciano A., Palzkill, Timothy, Dal Peraro, Matteo, Uversky, Vladimir N.

Journal:

Year:

2015

Language:

english

File:

PDF, 3.72 MB

english, 2015