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51

Confident protein identification using the average peptide score method coupled with search-specific, ab initio thresholds

Ian Shadforth, Tom Dunkley, Kathryn Lilley, Daniel Crowther, Conrad Bessant

Journal:

Rapid Communications in Mass Spectrometry

Year:

2005

Language:

english

File:

PDF, 186 KB

english, 2005

52

Taming the isobaric tagging elephant in the room in quantitative proteomics

Christoforou, Andy, Lilley, Kathryn S

Journal:

Year:

2011

Language:

english

File:

PDF, 322 KB

english, 2011

53

α-Klotho Expression in Human Tissues

Lim, Kenneth, Groen, Arnoud, Molostvov, Guerman, Lu, Tzongshi, Lilley, Kathryn S., Snead, David, James, Sean, Wilkinson, Ian B., Ting, Stephen, Hsiao, Li-Li, Hiemstra, Thomas F., Zehnder, Daniel

Journal:

Journal of Clinical Endocrinology & Metabolism

Year:

2015

Language:

english

File:

PDF, 3.79 MB

english, 2015

54

Identification of Glycosylphosphatidylinositol-Anchored Proteins in Arabidopsis. A Proteomic and Genomic Analysis

Georg H. H. Borner, Kathryn S. Lilley, Timothy J. Stevens and Paul Dupree

Journal:

PLANT PHYSIOLOGY

Year:

2003

Language:

english

File:

PDF, 1.85 MB

english, 2003

55

Mimicking nature: Phosphopeptide enrichment using combinatorial libraries of affinity ligands

Batalha, Iris L., Zhou, Houjiang, Lilley, Kathryn, Lowe, Christopher R., Roque, Ana C.A.

Journal:

Journal of Chromatography A

Year:

2016

Language:

english

File:

PDF, 1.65 MB

english, 2016

56

Stat3 mediated alterations in lysosomal membrane protein composition

Lloyd-Lewis, Bethan, Krueger, Caroline C, Sargeant, Timothy J, D'Angelo, Michael E, Deery, Michael J, Feret, Renata, Howard, Julie A, Lilley, Kathryn S., Watson, Christine J

Journal:

Journal of Biological Chemistry

Year:

2018

Language:

english

File:

PDF, 3.57 MB

english, 2018

57

Organic phase separation opens up new opportunities to interrogate the RNA-binding proteome

Smith, Tom, Villanueva, Eneko, Queiroz, Rayner M.L., Dawson, Charlotte S., Elzek, Mohamed, Urdaneta, Erika C., Willis, Anne E., Beckmann, Benedikt M., Krijgsveld, Jeroen, Lilley, Kathryn S.

Journal:

Current Opinion in Chemical Biology

Year:

2020

File:

PDF, 590 KB

2020

58

Identification by 2-D DIGE of apoplastic proteins regulated by oligogalacturonides in Arabidopsis thaliana

Manuela Casasoli, Sara Spadoni, Kathryn S. Lilley, Felice Cervone, Giulia De Lorenzo, Benedetta Mattei

Journal:

Year:

2008

Language:

english

File:

PDF, 314 KB

english, 2008

59

The partial amino acid sequence of the NAD -dependent glutamate dehydrogenase of Clostridium symbiosum: implications for the evolution and structural basis of coenzyme specificity

Kathryn S. Lilley, Patrick J. Baker, K. Linda Britton, Timothy J. Stillman, Paul E. Brown, Arthur J.G. Moir, Paul C. Engel, David W. Rice, J. Ellis Bell, Evelyn Bell

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1991

Language:

english

File:

PDF, 510 KB

english, 1991

60

Antigen binding and cytotoxic properties of a recombinant immunotoxin incorporating the lytic peptide, melittin

Rosanne D. Dunn, Kathryn M. Weston, Terrence J. Longhurst, Glenn G. Lilley, Donald E. Rivett, Peter J. Hudson, Robert L. Raison

Journal:

Immunotechnology

Year:

1996

Language:

english

File:

PDF, 1.17 MB

english, 1996

61

Effects of Traveling Wave Ion Mobility Separation on Data Independent Acquisition in Proteomics Studies

Shliaha, Pavel V., Bond, Nicholas J., Gatto, Laurent, Lilley, Kathryn S.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 2.94 MB

english, 2013

62

MRMaid 2.0: Mining PRIDE for Evidence-Based SRM Transitions

Fan, Jun, Mohareb, Fady, Bond, Nicholas J., Lilley, Kathryn S., Bessant, Conrad

Journal:

Omics A Journal of Integrative Biology

Year:

2012

Language:

english

File:

PDF, 189 KB

english, 2012

63

Identification of S-nitrosated mitochondrial proteins by S -nitrosothiol difference in gel electrophoresis (SNO-DIGE): implications for the regulation of mitochondrial function by reversible S-nitrosation

Chouchani, Edward T., Hurd, Thomas R., Nadtochiy, Sergiy M., Brookes, Paul S., Fearnley, Ian M., Lilley, Kathryn S., Smith, Robin A. J., Murphy, Michael P.

Journal:

Biochemical Journal

Year:

2010

Language:

english

File:

PDF, 958 KB

english, 2010

64

Trans -acting translational regulatory RNA binding proteins

Harvey, Robert F., Smith, Tom S., Mulroney, Thomas, Queiroz, Rayner M. L., Pizzinga, Mariavittoria, Dezi, Veronica, Villenueva, Eneko, Ramakrishna, Manasa, Lilley, Kathryn S., Willis, Anne E.

Journal:

Wiley Interdisciplinary Reviews: RNA

Year:

2018

Language:

english

File:

PDF, 2.33 MB

english, 2018

65

Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanisms

Marondedze, Claudius, Thomas, Ludivine, Gehring, Chris, Lilley, Kathryn S.

Journal:

BMC Plant Biology

Year:

2019

Language:

english

File:

PDF, 1.39 MB

english, 2019

66

Moving Profiling Spatial Proteomics Beyond Discrete Classification

Crook, Oliver M., Smith, Tom, Elzek, Mohamed, Lilley, Kathryn S.

Journal:

Year:

2020

File:

PDF, 2.31 MB

2020

67

Challenges for proteomics core facilities

Kathryn S. Lilley, Michael J. Deery, Laurent Gatto

Journal:

Year:

2011

Language:

english

File:

PDF, 319 KB

english, 2011

68

Determining a significant change in protein expression with DeCyder™ during a pair-wise comparison using two-dimensional difference gel electrophoresis

Natasha A. Karp, David P. Kreil, Kathryn S. Lilley

Journal:

Year:

2004

Language:

english

File:

PDF, 176 KB

english, 2004

69

Guidelines for reporting the use of mass spectrometry in proteomics

Taylor, Chris F, Binz, Pierre-Alain, Aebersold, Ruedi, Affolter, Michel, Barkovich, Robert, Deutsch, Eric W, Horn, David M, Hühmer, Andreas, Kussmann, Martin, Lilley, Kathryn

Journal:

Nature Biotechnology

Year:

2008

Language:

english

File:

PDF, 154 KB

english, 2008

70

Toward a Comprehensive Map of the Effectors of Rab GTPases

Gillingham, Alison K., Sinka, Rita, Torres, Isabel L., Lilley, Kathryn S., Munro, Sean

Journal:

Developmental Cell

Year:

2014

Language:

english

File:

PDF, 5.53 MB

english, 2014

71

Palmitoylation in plants

Hemsley, Piers A., Weimar, Thilo, Lilley, Kathryn, Dupree, Paul, Grierson, Claire

Journal:

Plant Signaling & Behavior

Year:

2013

Language:

english

File:

PDF, 2.00 MB

english, 2013

72

Putative Glycosyltransferases and Other Plant Golgi Apparatus Proteins Are Revealed by LOPIT Proteomics

Nino Nikolovski, Denis Rubtsov, Marcelo P. Segura, Godfrey P. Miles, Tim J. Stevens, Tom P.J. Dunkley, Sean Munro, Kathryn S. Lilley and Paul Dupree

Journal:

PLANT PHYSIOLOGY

Year:

2012

Language:

english

File:

PDF, 3.14 MB

english, 2012

73

Multiple Marker Abundance Profiling: combining selected reaction monitoring and data-dependent acquisition for rapid estimation of organelle abundance in subcellular samples

Hooper, Cornelia M., Stevens, Tim J., Saukkonen, Anna, Castleden, Ian R., Singh, Pragya, Mann, Gregory W., Fabre, Bertrand, Ito, Jun, Deery, Mike, Lilley, Kathryn S., Petzold, Christopher J., Millar,

Journal:

The Plant Journal

Year:

2017

Language:

english

File:

PDF, 1.34 MB

english, 2017

74

Application of partial least squares discriminant analysis to two-dimensional difference gel studies in expression proteomics

Natasha A. Karp, Julian L. Griffin, Kathryn S. Lilley

Journal:

Year:

2005

Language:

english

File:

PDF, 418 KB

english, 2005

75

i-Tracker: For quantitative proteomics using iTRAQ™

Ian P Shadforth, Tom PJ Dunkley, Kathryn S Lilley, Conrad Bessant

Journal:

Year:

2005

Language:

english

File:

PDF, 299 KB

english, 2005

76

Quantitation and Other Critical Issues in Clinical Proteomic Studies

Banks, Roz, Lilley, Kathryn, Speicher, David W.

Journal:

PROTEOMICS - Clinical Applications

Year:

2015

Language:

english

File:

PDF, 234 KB

english, 2015

77

Proteomic approaches to the characterization of protein thiol modification

Edward T Chouchani, Andrew M James, Ian M Fearnley, Kathryn S Lilley, Michael P Murphy

Journal:

Current Opinion in Chemical Biology

Year:

2011

Language:

english

File:

PDF, 358 KB

english, 2011

78

The minimum information about a proteomics experiment (MIAPE)

Taylor, Chris F, Paton, Norman W, Lilley, Kathryn S, Binz, Pierre-Alain, Julian, Randall K, Jones, Andrew R, Zhu, Weimin, Apweiler, Rolf, Aebersold, Ruedi, Deutsch, Eric W

Journal:

Nature Biotechnology

Year:

2007

Language:

english

File:

PDF, 291 KB

english, 2007

79

Additional Precursor Purification in Isobaric Mass Tagging Experiments by Traveling Wave Ion Mobility Separation (TWIMS)

Shliaha, Pavel V., Jukes-Jones, Rebekah, Christoforou, Andy, Fox, Jonathan, Hughes, Chris, Langridge, James, Cain, Kelvin, Lilley, Kathryn S.

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 2.20 MB

english, 2014

80

A Quantitative Phosphoproteome Analysis of cGMP-Dependent Cellular Responses in Arabidopsis thaliana

Marondedze, Claudius, Groen, Arnoud J., Thomas, Ludivine, Lilley, Kathryn S., Gehring, Chris

Journal:

Molecular Plant

Year:

2015

Language:

english

File:

PDF, 611 KB

english, 2015

81

Antibody-mediated neutralization of myelin-associated EphrinB3 accelerates CNS remyelination

Syed, Yasir A., Zhao, Chao, Mahad, Don, Möbius, Wiebke, Altmann, Friedrich, Foss, Franziska, Sentürk, Aycan, Acker-Palmer, Amparo, Lubec, Gert, Lilley, Kathryn, Franklin, Robin J. M., Nave, Klaus-A.,

Journal:

Acta Neuropathologica

Year:

2016

Language:

english

File:

PDF, 4.35 MB

english, 2016

82

The RNA-binding protein repertoire of Arabidopsis thaliana

Marondedze, Claudius, Thomas, Ludivine, Serrano, Natalia L., Lilley, Kathryn S., Gehring, Chris

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.23 MB

english, 2016

83

Spectral Libraries for SWATH-MS Assays for Drosophila melanogaster and Solanum lycopersicum

Fabre, Bertrand, Korona, Dagmara, Mata-Martinez, Clara I., Parsons, Harriet T., Deery, Michael J., Hertog, Maarten L. A. T. M., Nicolaï, Bart M., Russell, Steven, Lilley, Kathryn S.

Journal:

Year:

2017

Language:

english

File:

PDF, 963 KB

english, 2017

84

Characterisation of protein isoforms encoded by the Drosophila Glycogen Synthase Kinase 3 gene shaggy

Korona, Dagmara, Nightingale, Daniel, Fabre, Bertrand, Nelson, Michael, Fischer, Bettina, Johnson, Glynnis, Lees, Jonathan, Hubbard, Simon, Lilley, Kathryn, Russell, Steven, Klymkowsky, Michael

Journal:

Year:

2020

File:

PDF, 2.33 MB

2020

85

Correction: Proteomics of intracellular freezing survival

Thorne, Michael A. S., BritovÅ¡ek, Nina KoÄevar, Hawkins, Liam, Lilley, Kathryn S., Storey, Kenneth B.

Journal:

Year:

2020

File:

PDF, 175 KB

2020

86

Quantification and identification of mitochondrial proteins containing vicinal dithiols

Raquel Requejo, Edward T. Chouchani, Andrew M. James, Tracy A. Prime, Kathryn S. Lilley, Ian M. Fearnley, Michael P. Murphy

Journal:

Archives of Biochemistry and Biophysics

Year:

2010

Language:

english

File:

PDF, 608 KB

english, 2010

87

Identification of a New Quorum-Sensing-Controlled Virulence Factor in Erwinia carotovora subsp. atroseptica Secreted via the Type II Targeting Pathway

Corbett, Mark, Virtue, Sam, Bell, Kenneth, Birch, Paul, Burr, Tom, Hyman, Lysbeth, Lilley, Kathryn, Poock, Susannah, Toth, Ian, Salmond, George

Journal:

Molecular Plant-Microbe Interactions

Year:

2005

Language:

english

File:

PDF, 706 KB

english, 2005

88

Mapping Organelle Proteins and Protein Complexes in Drosophila melanogaster

Tan, Denise J. L., Dvinge, Heidi, Christoforou, Andrew, Bertone, Paul, Martinez Arias, Alfonso, Lilley, Kathryn S.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 3.71 MB

english, 2009

89

Comparative Proteomics of Clathrin-Coated Vesicles

Georg H. H. Borner, Michael Harbour, Svenja Hester, Kathryn S. Lilley and Margaret S. Robinson

Journal:

The Journal of Cell Biology

Year:

2006

Language:

english

File:

PDF, 1.46 MB

english, 2006

90

Proteomic responses of HepG2 cell monolayers and 3D spheroids to selected hepatotoxins

Hurrell, Tracey, Lilley, Kathryn S., Cromarty, Allan Duncan

Journal:

Toxicology Letters

Year:

2019

Language:

english

File:

PDF, 2.14 MB

english, 2019

91

Transcriptional regulation of the genes involved in protein metabolism and processing in Saccharomyces cerevisiae

Dikicioglu, Duygu, Nightingale, Daniel J H, Wood, Valerie, Lilley, Kathryn S, Oliver, Stephen G

Journal:

FEMS Yeast Research

Year:

2019

Language:

english

File:

PDF, 1.37 MB

english, 2019

92

Efficient recovery of the RNA-bound proteome and protein-bound transcriptome using phase separation (OOPS)

Villanueva, Eneko, Smith, Tom, Queiroz, Rayner M. L., Monti, Mie, Pizzinga, Mariavittoria, Elzek, Mohamed, Dezi, Veronica, Harvey, Robert F., Ramakrishna, Manasa, Willis, Anne E., Lilley, Kathryn S.

Journal:

Nature Protocols

Year:

2020

File:

PDF, 1.27 MB

2020

93

The Drosophila melanogaster sperm proteome-II (DmSP-II)

Elizabeth R. Wasbrough, Steve Dorus, Svenja Hester, Julie Howard-Murkin, Kathryn Lilley, Elaine Wilkin, Ashoka Polpitiya, Konstantinos Petritis, Timothy L. Karr

Journal:

Journal of Proteomics

Year:

2010

Language:

english

File:

PDF, 1.45 MB

english, 2010

94

Proteomics of total membranes and subcellular membranes

Groen, Arnoud J, Lilley, Kathryn S

Journal:

Expert Review of Proteomics

Year:

2010

Language:

english

File:

PDF, 1.66 MB

english, 2010

95

Differentiation of Isomeric N-Glycan Structures by Normal-Phase Liquid Chromatography−MALDI-TOF/TOF Tandem Mass Spectrometry

Maslen, Sarah, Sadowski, Pawel, Adam, Alex, Lilley, Kathryn, Stephens, Elaine

Journal:

Analytical Chemistry

Year:

2006

Language:

english

File:

PDF, 271 KB

english, 2006

96

Erratum to: Antibody-mediated neutralization of myelin-associated EphrinB3 accelerates CNS remyelination

Syed, Yasir A., Zhao, Chao, Mahad, Don, Möbius, Wiebke, Altmann, Friedrich, Foss, Franziska, González, G. A., Sentürk, Aycan, Acker-Palmer, Amparo, Lubec, Gert, Lilley, Kathryn, Franklin, Robin J. M.,

Journal:

Acta Neuropathologica

Year:

2016

Language:

english

File:

PDF, 358 KB

english, 2016

97

A proteomic time course through the differentiation of human induced pluripotent stem cells into hepatocyte-like cells

Hurrell, Tracey, Segeritz, Charis-Patricia, Vallier, Ludovic, Lilley, Kathryn S., Cromarty, Allan D.

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 2.37 MB

english, 2019

98

N-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway

Zhang, Hongtao, Gannon, Lucy, Hassall, Kirsty L., Deery, Michael J., Gibbs, Daniel J., Holdsworth, Michael J., van der Hoorn, Renier A. L., Lilley, Kathryn S., Theodoulou, Frederica L.

Journal:

New Phytologist

Year:

2017

Language:

english

File:

PDF, 1.21 MB

english, 2017

99

Ketamine’s Effects on the Glutamatergic and GABAergic Systems: A Proteomics and Metabolomics Study in Mice

Weckmann, Katja, Deery, Michael J., Howard, Julie A., Feret, Renata, Asara, John M., Dethloff, Frederik, Filiou, Michaela D., Labermaier, Christiana, Maccarrone, Giuseppina, Lilley, Kathryn S., Muelle

Journal:

Molecular Neuropsychiatry

Year:

2018

Language:

english

File:

PDF, 401 KB

english, 2018

100

Comparison of Drosophila melanogaster embryo and adult proteome by SWATH-MS reveals differential regulation of protein synthesis, degradation machinery and metabolism modules

Fabre, Bertrand, Korona, Dagmara, Lees, Jonathan G., Lazar, Ikrame, Livneh, Ido, Brunet, Manon, Orengo, Christine A., Russell, Steven, Lilley, Kathryn S.

Journal:

Journal of Proteome Research

Year:

2019

Language:

english

File:

PDF, 873 KB

english, 2019

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