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51

miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases

Cedric Laczny, Petra Leidinger, Jan Haas, Nicole Ludwig, Christina Backes, Andreas Gerasch, Michael Kaufmann, Britta Vogel, Hugo A Katus, Benjamin Meder, Cord Stähler, Eckart Meese, Hans-Peter Lenhof,

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.13 MB

english, 2012

52

NightShift: NMR shift inference by general hybrid model training - a framework for NMR chemical shift prediction

Anna Katharina Dehof, Simon Loew, Hans-Peter Lenhof…

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 534 KB

english, 2013

53

Messtechnik für Motorenzylinder

Dipl.-Ing. (FH) Ulrich Lenhof…

Journal:

MTZ - Motortechnische Zeitschrift

Year:

2002

Language:

german

File:

PDF, 2.00 MB

german, 2002

54

Efficient computation of root mean square deviations under rigid transformations

Hildebrandt, Anna K., Dietzen, Matthias, Lengauer, Thomas, Lenhof, Hans-Peter, Althaus, Ernst, Hildebrandt, Andreas

Journal:

Journal of Computational Chemistry

Year:

2014

Language:

english

File:

PDF, 304 KB

english, 2014

55

Myeloid cell RelA/p65 promotes lung cancer proliferation through Wnt/β-catenin signaling in murine and human tumor cells

Li, D, Beisswenger, C, Herr, C, Hellberg, J, Han, G, Zakharkina, T, Voss, M, Wiewrodt, R, Bohle, R M, Menger, M D, Schmid, R M, Stöckel, D, Lenhof, H-P, Bals, R

Journal:

Year:

2014

Language:

english

File:

PDF, 3.30 MB

english, 2014

56

ballaxy: web services for structural bioinformatics

Hildebrandt, A. K., Stockel, D., Fischer, N. M., de la Garza, L., Kruger, J., Nickels, S., Rottig, M., Scharfe, C., Schumann, M., Thiel, P., Lenhof, H.-P., Kohlbacher, O., Hildebrandt, A.

Journal:

Year:

2015

Language:

english

File:

PDF, 80 KB

english, 2015

57

Should the standard dimethyl sulfoxide concentration be reduced? Results of a European Group for Blood and Marrow Transplantation prospective noninterventional study on usage and side effects of dimethyl sulfoxide

Morris, Curly, de Wreede, Liesbeth, Scholten, Marijke, Brand, Ronald, van Biezen, Anja, Sureda, Anna, Dickmeiss, Ebbe, Trneny, Marek, Apperley, Jane, Chiusolo, Patrizia, van Imhoff, Gustaaf W., Lenhof

Journal:

Transfusion (Elsevier)

Year:

2014

Language:

english

File:

PDF, 255 KB

english, 2014

58

Proteomic Study of Human Glioblastoma Multiforme Tissue Employing Complementary Two-Dimensional Liquid Chromatography- and Mass Spectrometry-Based Approaches

Melchior, Katja, Tholey, Andreas, Heisel, Sabrina, Keller, Andreas, Lenhof, Hans-Peter, Meese, Eckart, Huber, Christian G.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 1.56 MB

english, 2009

59

[IEEE Proceedings., 33rd Annual Symposium on Foundations of Computer Science - Pittsburgh, PA, USA (1992.10.24-1992.10.27)] Proceedings., 33rd Annual Symposium on Foundations of Computer Science - Enumerating the k closest pairs optimally

Lenhof, H.-P., Smid, M.

Year:

1992

Language:

english

File:

PDF, 539 KB

english, 1992

60

[IEEE 2010 14th International Conference Information Visualisation (IV) - London, TBD, United Kingdom (2010.07.26-2010.07.29)] 2010 14th International Conference Information Visualisation - Real-Time Ray Tracing of Complex Molecular Scenes

Marsalek, Lukas, Dehof, Anna Katharina, Georgiev, Iliyan, Lenhof, Hans-Peter, Slusallek, Philipp, Hildebrandt, Andreas

Year:

2010

Language:

english

File:

PDF, 5.79 MB

english, 2010

61

Engine cylinder metrology

Ulrich Lenhof,Frank Zwein

Journal:

MTZ worldwide eMagazine

Year:

2002

Language:

english

File:

PDF, 153 KB

english, 2002

62

Novel Formulation of Nonlocal Electrostatics

Hildebrandt, A., Blossey, R., Rjasanow, S., Kohlbacher, O., Lenhof, H.-P.

Journal:

Physical Review Letters

Year:

2004

Language:

english

File:

PDF, 235 KB

english, 2004

63

Cerebral desaturations in preterm infants: a crossover trial on influence of oxygen saturation target range

Schmid, M. B., Hopfner, R. J., Lenhof, S., Hummler, H. D., Fuchs, H.

Journal:

Archives of Disease in Childhood - Fetal and Neonatal Edition

Year:

2013

Language:

english

File:

PDF, 542 KB

english, 2013

64

A Combinatorial Approach to Protein Docking with Flexible Side Chains

Althaus, Ernst, Kohlbacher, Oliver, Lenhof, Hans-Peter, Müller, Peter

Journal:

Journal of Computational Biology

Year:

2002

Language:

english

File:

PDF, 345 KB

english, 2002

65

[IEEE Distributed Processing, Workshops and Phd Forum (IPDPSW) - Atlanta, GA, USA (2010.04.19-2010.04.23)] 2010 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW) - Measuring properties of molecular surfaces using ray casting

Phillips, Mike, Georgiev, Iliyan, Dehof, Anna Katharina, Nickels, Stefan, Marsalek, Lukas, Lenhof, Hans-Peter, Hildebrandt, Andreas, Slusallek, Philipp

Year:

2010

Language:

english

File:

PDF, 485 KB

english, 2010

66

Stable serum miRNA profiles as potential tool for non-invasive lung cancer diagnosis

Keller, Andreas, Leidinger, Petra, Gislefoss, Randi, Haugen, Aage, Langseth, Hilde, Staehler, Peer, Lenhof, Hans-Peter, Meese, Eckart

Journal:

Year:

2011

Language:

english

File:

PDF, 1.51 MB

english, 2011

67

[IEEE 2013 IEEE Symposium on Biological Data Visualization (BioVis) - Atlanta, GA, USA (2013.10.13-2013.10.14)] 2013 IEEE Symposium on Biological Data Visualization (BioVis) - PresentaBALL — A powerful package for presentations and lessons in structural biology

Nickels, Stefan, Stockel, Daniel, Mueller, Sabine C., Lenhof, Hans-Peter, Hildebrandt, Andreas, Dehof, Anna Katharina

Year:

2013

Language:

english

File:

PDF, 2.08 MB

english, 2013

68

A dictionary on microRNAs and their putative target pathways

Backes, C., Meese, E., Lenhof, H.-P., Keller, A.

Journal:

Nucleic Acids Research

Year:

2010

Language:

english

File:

PDF, 6.81 MB

english, 2010

69

[ACM Press the first annual international conference - Santa Fe, New Mexico, United States (1997.01.20-1997.01.23)] Proceedings of the first annual international conference on Computational molecular biology - RECOMB '97 - A branch-and-cut algorithm for multiple sequence alignment

Reinert, K., Lenhof, H.-P., Mutzel, P., Mehlhorn, K., Kececioglu, J. D.

Year:

1997

Language:

english

File:

PDF, 1.12 MB

english, 1997

70

A Polyhedral Approach to RNA Sequence Structure Alignment

LENHOF, HANS-PETER, REINERT, KNUT, VINGRON, MARTIN

Journal:

Journal of Computational Biology

Year:

1998

Language:

english

File:

PDF, 1.73 MB

english, 1998

71

Phylogenomics with paralogs

Hellmuth, Marc, Wieseke, Nicolas, Lechner, Marcus, Lenhof, Hans-Peter, Middendorf, Martin, Stadler, Peter F.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 822 KB

english, 2015

72

SEQUENTIAL AND PARALLEL ALGORITHMS FOR THE k CLOSEST PAIRS PROBLEM

LENHOF, HANS-PETER, SMID, MICHIEL

Journal:

International Journal of Computational Geometry & Applications

Year:

1995

Language:

english

File:

PDF, 710 KB

english, 1995

73

A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis

Keller, A., Backes, C., Gerasch, A., Kaufmann, M., Kohlbacher, O., Meese, E., Lenhof, H.-P.

Journal:

Year:

2009

Language:

english

File:

PDF, 378 KB

english, 2009

74

Complex humoral immune response against a benign tumor: Frequent antibody response against specific antigens as diagnostic targets

Comtesse, N., Zippel, A., Walle, S., Monz, D., Backes, C., Fischer, U., Mayer, J., Ludwig, N., Hildebrandt, A., Keller, A., Steudel, W.-I., Lenhof, H.-P., Meese, E.

Journal:

Proceedings of the National Academy of Sciences

Year:

2005

Language:

english

File:

PDF, 449 KB

english, 2005

75

Cerebral Oxygenation during Intermittent Hypoxemia and Bradycardia in Preterm Infants

Schmid, Manuel B., Hopfner, Reinhard J., Lenhof, Susanne, Hummler, Helmut D., Fuchs, Hans

Journal:

Year:

2015

Language:

english

File:

PDF, 709 KB

english, 2015

76

An integer linear programming approach for finding deregulated subgraphs in regulatory networks

Backes, C., Rurainski, A., Klau, G. W., Muller, O., Stockel, D., Gerasch, A., Kuntzer, J., Maisel, D., Ludwig, N., Hein, M., Keller, A., Burtscher, H., Kaufmann, M., Meese, E., Lenhof, H.-P.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 6.36 MB

english, 2012

77

A Different View on DNA Amplifications Indicates Frequent, Highly Complex, and Stable Amplicons on 12q13-21 in Glioma

Fischer, U., Keller, A., Leidinger, P., Deutscher, S., Heisel, S., Urbschat, S., Lenhof, H.-P., Meese, E.

Journal:

Molecular Cancer Research

Year:

2008

Language:

english

File:

PDF, 724 KB

english, 2008

78

Circulating serum miRNAs as potential biomarkers for nephroblastoma

Ludwig, Nicole, Nourkami-Tutdibi, Nasenien, Backes, Christina, Lenhof, Hans-Peter, Graf, Norbert, Keller, Andreas, Meese, Eckart

Journal:

Pediatric Blood & Cancer

Year:

2015

Language:

english

File:

PDF, 188 KB

english, 2015

79

SePaCS--a web-based application for classification of seroreactivity profiles

Keller, A., Comtesse, N., Ludwig, N., Meese, E., Lenhof, H.-P.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 442 KB

english, 2007

80

NetworkTrail--a web service for identifying and visualizing deregulated subnetworks

Stockel, D., Muller, O., Kehl, T., Gerasch, A., Backes, C., Rurainski, A., Keller, A., Kaufmann, M., Lenhof, H.-P.

Journal:

Year:

2013

Language:

english

File:

PDF, 137 KB

english, 2013

81

Pattern of Serum Autoantibodies Allows Accurate Distinction between a Tumor and Pathologies of the Same Organ

Ludwig, N., Keller, A., Comtesse, N., Rheinheimer, S., Pallasch, C., Fischer, U., Fassbender, K., Steudel, W. I., Lenhof, H.-P., Meese, E.

Journal:

Clinical Cancer Research

Year:

2008

Language:

english

File:

PDF, 319 KB

english, 2008

82

ECCB 2003

Lenhof, H.-P., Sagot, M.-F.

Journal:

Year:

2003

Language:

english

File:

PDF, 20 KB

english, 2003

83

Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics

Althaus, E., Caprara, A., Lenhof, H.-P., Reinert, K.

Journal:

Year:

2002

Language:

english

File:

PDF, 179 KB

english, 2002

84

Electrostatic potentials of proteins in water: a structured continuum approach

Hildebrandt, A., Blossey, R., Rjasanow, S., Kohlbacher, O., Lenhof, H.-P.

Journal:

Year:

2007

Language:

english

File:

PDF, 254 KB

english, 2007

85

BioMiner--modeling, analyzing, and visualizing biochemical pathways and networks

Sirava, M., Schafer, T., Eiglsperger, M., Kaufmann, M., Kohlbacher, O., Bornberg-Bauer, E., Lenhof, H. P.

Journal:

Year:

2002

Language:

english

File:

PDF, 332 KB

english, 2002

86

Network-based interactive navigation and analysis of large biological datasets

Gerasch, Andreas, Küntzer, Jan, Niermann, Peter, Stöckel, Daniel, Kaufmann, Michael, Kohlbacher, Oliver, Lenhof, Hans-Peter

Journal:

it - Information Technology

Year:

2015

Language:

english

File:

PDF, 1.49 MB

english, 2015

87

An exact solution for the segment-to-segment multiple sequence alignment problem

Lenhof, H., Morgenstern, B, Reinert, K

Journal:

Year:

1999

Language:

english

File:

PDF, 264 KB

english, 1999

88

BALL--rapid software prototyping in computational molecular biology

Kohlbacher, O., Lenhof, H.-P.

Journal:

Year:

2000

Language:

english

File:

PDF, 224 KB

english, 2000

89

GeneTrail--advanced gene set enrichment analysis

Backes, C., Keller, A., Kuentzer, J., Kneissl, B., Comtesse, N., Elnakady, Y. A., Muller, R., Meese, E., Lenhof, H.-P.

Journal:

Nucleic Acids Research

Year:

2007

Language:

english

File:

PDF, 4.32 MB

english, 2007

90

[ACM Press the second annual international conference - New York, New York, United States (1998.03.22-1998.03.25)] Proceedings of the second annual international conference on Computational molecular biology - RECOMB '98 - A polyhedral approach to RNA sequence structure alignment

Lenhof, Hans-Peter, Reinert, Knut, Vingron, Martin

Year:

1998

Language:

english

File:

PDF, 1012 KB

english, 1998

91

[ACM Press the first annual international conference - Santa Fe, New Mexico, United States (1997.01.20-1997.01.23)] Proceedings of the first annual international conference on Computational molecular biology - RECOMB '97 - New contact measures for the protein docking problem

Lenhof, Hans-Peter

Year:

1997

Language:

english

File:

PDF, 1.24 MB

english, 1997

92

[ACM Press the fifth annual international conference - Montreal, Quebec, Canada (2001.04.22-2001.04.25)] Proceedings of the fifth annual international conference on Computational biology - RECOMB '01 - A NMR-spectra-based scoring function for protein docking

Kohlbacher, O., Burchardt, A., Moll, A., Hildebrandt, A., Bayer, P., Lenhof, H.-P

Year:

2001

File:

PDF, 256 KB

2001

93

Rapid software prototyping in molecular modeling using the biochemical algorithms library (BALL)

Boghossian, N. P., Kohlbacher, O., Lenhof, H. P.

Journal:

Journal of Experimental Algorithmics

Year:

2000

File:

PDF, 271 KB

2000

94

[ACM Press the 6th International Workshop - Bolzano, Italy (2010.09.15-2010.09.15)] Proceedings of the 6th International Workshop on Security Measurements and Metrics - MetriSec '10 - Impact of plugins on the security of web applications

Walden, James, Doyle, Maureen, Lenhof, Rob, Murray, John, Plunkett, Andrew

Year:

2010

Language:

english

File:

PDF, 490 KB

english, 2010

95

Automated bond order assignment as an optimization problem

Dehof, A. K., Rurainski, A., Bui, Q. B. A., Bocker, S., Lenhof, H.-P., Hildebrandt, A.

Journal:

Year:

2011

Language:

english

File:

PDF, 217 KB

english, 2011

96

q -gram based database searching using a suffix array (QUASAR)

S. Burkhardt, A. Crauser, P. Ferragina, H. Lenhof, E. Rivals, M. Vingron

Year:

1999

Language:

english

File:

PDF, 876 KB

english, 1999

97

[ACM Press the tenth annual symposium - Stony Brook, New York, United States (1994.06.06-1994.06.08)] Proceedings of the tenth annual symposium on Computational geometry - SCG '94 - An animation of a fixed-radius all-nearest-neighbors algorithm

Lenhof, Hans-Peter, Smid, Michiel

Year:

1994

Language:

english

File:

PDF, 79 KB

english, 1994

98

[ACM Press the fourth annual international conference - Tokyo, Japan (2000..-..)] Proceedings of the fourth annual international conference on Computational molecular biology - RECOMB '00 - A combinatorial approach to protein docking with flexible side-chains

Althaus, E., Kohlbacher, O., Lenhof, H.-P., Müller, P.

Year:

2000

Language:

english

File:

PDF, 813 KB

english, 2000

99

Systematic permutation testing in GWAS pathway analyses: identification of genetic networks in dilated cardiomyopathy and ulcerative colitis

Backes, Christina, Rühle, Frank, Stoll, Monika, Haas, Jan, Frese, Karen, Franke, Andre, Lieb, Wolfgang, Wichmann, H-Erich, Weis, Tanja, Kloos, Wanda, Lenhof, Hans-Peter, Meese, Eckart, Katus, Hugo, Me

Journal:

Year:

2014

Language:

english

File:

PDF, 1.33 MB

english, 2014

100

GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences

Backes, C., Kuentzer, J., Lenhof, H.-P., Comtesse, N., Meese, E.

Journal:

Nucleic Acids Research

Year:

2005

Language:

english

File:

PDF, 222 KB

english, 2005